Class information for:
Level 2: BMC BIOINFORMATICS//MATHEMATICAL & COMPUTATIONAL BIOLOGY//BIOINFORMATICS

Basic class information
Class id #P Avg. number of
references		 Database coverage
of references
868 11572 39.6 79%


Bar chart of Publication_year

Last years might be incomplete

Hierarchy of classes
The table includes all classes above and classes immediately below the current class.


Cluster id Level Cluster label #P
0 4 BIOCHEMISTRY & MOLECULAR BIOLOGY//CELL BIOLOGY//ONCOLOGY 4064930
90 3       MATHEMATICAL & COMPUTATIONAL BIOLOGY//BIOINFORMATICS//BMC BIOINFORMATICS 77178
868 2             BMC BIOINFORMATICS//MATHEMATICAL & COMPUTATIONAL BIOLOGY//BIOINFORMATICS 11572
681 1                   PROTEIN INTERACTION NETWORK//PROTEIN PROTEIN INTERACTION NETWORK//ESSENTIAL PROTEINS 3166
2901 1                   BMC BIOINFORMATICS//MICROARRAY IMAGE//BIOINFORMATICS 2118
6856 1                   NETWORK PHARMACOLOGY//DRUG REPOSITIONING//SYSTEMS PHARMACOLOGY 1436
7323 1                   BICLUSTERING//GENE EXPRESSION DATA//GENE EXPRESSION DATA ANALYSIS 1381
9574 1                   GENE SET ANALYSIS//GENE ONTOLOGY//BMC BIOINFORMATICS 1142
10975 1                   GENE PRIORITIZATION//DISEASE GENE PREDICTION//HUMAN DISEASE NETWORK 1019
20966 1                   DYNAMICAL NETWORK BIOMARKER//EDGE BIOMARKER//ABORAT INNOVAT MATH MODELLING 439
21112 1                   PAULLONES//ADV BIOINFORMAT SYST MED//NCI 60 433
22399 1                   LUNG CANCER DIAGNOSIS AND PROGNOSIS//AIRWAY EPITHELIUM DEVELOPMENT//ANAT CYTOL PATHOL ALBERT BONNIOT 383
37522 1                   DIFFERENTIAL GENE EXPRESSION DETECTION//CANC GENOME DISCOVERY CCGD//CANCER GENE ACTIVATION HETEROGENEITY 55

Terms with highest relevance score


rank Term termType Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with term
in class
1 BMC BIOINFORMATICS journal 456436 10% 15% 1140
2 MATHEMATICAL & COMPUTATIONAL BIOLOGY WoSSC 452762 36% 4% 4196
3 BIOINFORMATICS journal 441211 12% 13% 1335
4 BICLUSTERING authKW 173996 1% 63% 105
5 PROTEIN INTERACTION NETWORK authKW 144470 1% 48% 114
6 BIOCHEMICAL RESEARCH METHODS WoSSC 124993 35% 1% 4021
7 PROTEIN PROTEIN INTERACTION NETWORK authKW 124138 1% 37% 129
8 GENE ONTOLOGY authKW 94748 1% 21% 170
9 BMC SYSTEMS BIOLOGY journal 92047 2% 15% 237
10 GENE EXPRESSION DATA authKW 78991 1% 33% 91

Web of Science journal categories


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with term
in class
1 Mathematical & Computational Biology 452762 36% 4% 4196
2 Biochemical Research Methods 124993 35% 1% 4021
3 Biotechnology & Applied Microbiology 77826 35% 1% 4056
4 Genetics & Heredity 8576 12% 0% 1446
5 Statistics & Probability 6134 6% 0% 706
6 Computer Science, Interdisciplinary Applications 5712 7% 0% 761
7 Biochemistry & Molecular Biology 5457 22% 0% 2504
8 Medical Informatics 2063 2% 0% 207
9 Multidisciplinary Sciences 1352 2% 0% 241
10 Computer Science, Artificial Intelligence 1333 3% 0% 395

Address terms


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with term
in class
1 BIOINFORMAT 73271 5% 5% 624
2 BIOINFORMAT SCI TECHNOL 57811 1% 22% 101
3 SIBS NOVO NORDISK TRANSLAT PREDIABET 29191 0% 43% 26
4 COMP SCI 23975 10% 1% 1215
5 BIOMED INFORMAT 22755 2% 4% 251
6 CCSB 22246 0% 33% 26
7 ABORAT INNOVAT MATH MODELLING 21915 0% 40% 21
8 SYST BIOL 17631 2% 3% 241
9 SYST COHORT 17572 0% 67% 10
10 BIOINFORMAT PROGRAM 16993 1% 8% 86

Journals


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with term
in class
1 BMC BIOINFORMATICS 456436 10% 15% 1140
2 BIOINFORMATICS 441211 12% 13% 1335
3 BMC SYSTEMS BIOLOGY 92047 2% 15% 237
4 IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS 46803 1% 13% 142
5 JOURNAL OF COMPUTATIONAL BIOLOGY 32938 1% 9% 140
6 NUCLEIC ACIDS RESEARCH 28508 6% 2% 663
7 BRIEFINGS IN BIOINFORMATICS 23538 1% 11% 79
8 PLOS COMPUTATIONAL BIOLOGY 22266 2% 4% 199
9 STATISTICAL APPLICATIONS IN GENETICS AND MOLECULAR BIOLOGY 21947 1% 13% 65
10 INTERNATIONAL JOURNAL OF DATA MINING AND BIOINFORMATICS 21194 1% 14% 59

Author Key Words


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class		 LCSH search Wikipedia search
1 BICLUSTERING 173996 1% 63% 105 Search BICLUSTERING Search BICLUSTERING
2 PROTEIN INTERACTION NETWORK 144470 1% 48% 114 Search PROTEIN+INTERACTION+NETWORK Search PROTEIN+INTERACTION+NETWORK
3 PROTEIN PROTEIN INTERACTION NETWORK 124138 1% 37% 129 Search PROTEIN+PROTEIN+INTERACTION+NETWORK Search PROTEIN+PROTEIN+INTERACTION+NETWORK
4 GENE ONTOLOGY 94748 1% 21% 170 Search GENE+ONTOLOGY Search GENE+ONTOLOGY
5 GENE EXPRESSION DATA 78991 1% 33% 91 Search GENE+EXPRESSION+DATA Search GENE+EXPRESSION+DATA
6 ESSENTIAL PROTEINS 74332 0% 83% 34 Search ESSENTIAL+PROTEINS Search ESSENTIAL+PROTEINS
7 NETWORK PHARMACOLOGY 67131 0% 58% 44 Search NETWORK+PHARMACOLOGY Search NETWORK+PHARMACOLOGY
8 NETWORK ALIGNMENT 60791 0% 82% 28 Search NETWORK+ALIGNMENT Search NETWORK+ALIGNMENT
9 MICROARRAY 59931 5% 4% 585 Search MICROARRAY Search MICROARRAY
10 PROTEIN PROTEIN INTERACTION 47628 3% 5% 343 Search PROTEIN+PROTEIN+INTERACTION Search PROTEIN+PROTEIN+INTERACTION

Core articles
The table includes core articles in the class. The following variables is taken into account for the relevance score of an article in a cluster c:
(1) Number of references referring to publications in the class.
(2) Share of total number of active references referring to publications in the class.
(3) Age of the article. New articles get higher score than old articles.
(4) Citation rate, normalized to year.


Rank Reference # ref. in
cl.		 Shr. of ref. in
cl.		 Citations
1 CSERMELY, P , KORCSMAROS, T , KISS, HJM , LONDON, G , NUSSINOV, R , (2013) STRUCTURE AND DYNAMICS OF MOLECULAR NETWORKS: A NOVEL PARADIGM OF DRUG DISCOVERY A COMPREHENSIVE REVIEW.PHARMACOLOGY & THERAPEUTICS. VOL. 138. ISSUE 3. P. 333 -408 389 36% 205
2 BARABASI, AL , GULBAHCE, N , LOSCALZO, J , (2011) NETWORK MEDICINE: A NETWORK-BASED APPROACH TO HUMAN DISEASE.NATURE REVIEWS GENETICS. VOL. 12. ISSUE 1. P. 56 -68 71 61% 1018
3 SNIDER, J , KOTLYAR, M , SARAON, P , YAO, Z , JURISICA, I , STAGLJAR, I , (2015) FUNDAMENTALS OF PROTEIN INTERACTION NETWORK MAPPING.MOLECULAR SYSTEMS BIOLOGY. VOL. 11. ISSUE 12. P. - 130 67% 9
4 AL-HARAZI, O , AL INSAIF, S , AL-AJLAN, MA , KAYA, N , DZIMIRI, N , COLAK, D , (2016) INTEGRATED GENOMIC AND NETWORK-BASED ANALYSES OF COMPLEX DISEASES AND HUMAN DISEASE NETWORK.JOURNAL OF GENETICS AND GENOMICS. VOL. 43. ISSUE 6. P. 349 -367 125 68% 1
5 MITRA, K , CARVUNIS, AR , RAMESH, SK , IDEKER, T , (2013) INTEGRATIVE APPROACHES FOR FINDING MODULAR STRUCTURE IN BIOLOGICAL NETWORKS.NATURE REVIEWS GENETICS. VOL. 14. ISSUE 10. P. 719 -732 98 62% 109
6 SZKLARCZYK, D , FRANCESCHINI, A , WYDER, S , FORSLUND, K , HELLER, D , HUERTA-CEPAS, J , SIMONOVIC, M , ROTH, A , SANTOS, A , TSAFOU, KP , ET AL (2015) STRING V10: PROTEIN-PROTEIN INTERACTION NETWORKS, INTEGRATED OVER THE TREE OF LIFE.NUCLEIC ACIDS RESEARCH. VOL. 43. ISSUE D1. P. D447 -D452 25 68% 556
7 PETREY, D , HONIG, B , (2014) STRUCTURAL BIOINFORMATICS OF THE INTERACTOME.ANNUAL REVIEW OF BIOPHYSICS, VOL 43. VOL. 43. ISSUE . P. 193 -210 114 63% 16
8 CHEN, BL , FAN, WW , LIU, J , WU, FX , (2014) IDENTIFYING PROTEIN COMPLEXES AND FUNCTIONAL MODULES-FROM STATIC PPI NETWORKS TO DYNAMIC PPI NETWORKS.BRIEFINGS IN BIOINFORMATICS. VOL. 15. ISSUE 2. P. 177 -194 75 89% 23
9 WANG, JX , LI, M , PENG, W , WU, FX , LAN, W , (2015) COMPUTATIONAL APPROACHES FOR PRIORITIZING CANDIDATE DISEASE GENES BASED ON PPI NETWORKS.TSINGHUA SCIENCE AND TECHNOLOGY. VOL. 20. ISSUE 5. P. 500 -512 86 85% 1
10 SHARAN, R , ULITSKY, I , SHAMIR, R , (2007) NETWORK-BASED PREDICTION OF PROTEIN FUNCTION.MOLECULAR SYSTEMS BIOLOGY. VOL. 3. ISSUE . P. - 66 81% 388

Classes with closest relation at Level 2


Rank Class id link
1 548 BMC SYSTEMS BIOLOGY//MATHEMATICAL & COMPUTATIONAL BIOLOGY//BOOLEAN NETWORKS
2 1101 BIOINFORMATICS//COPY NUMBER VARIATION//NEXT GENERATION SEQUENCING
3 126 MOLECULAR BIOLOGY AND EVOLUTION//BIOINFORMATICS//MATHEMATICAL & COMPUTATIONAL BIOLOGY
4 1269 JOURNAL OF CHEMICAL INFORMATION AND MODELING//LIFE SCI INFORMAT//B IT
5 3046 PROGRAM TRANSLAT IMMUNOVIROL BIODEF//MAYO VACCINE GRP//SEPSIS
6 1714 MOLECULAR BEACON//MUTATION DETECTION//SEQUENCING BY HYBRIDIZATION
7 365 PROTEIN STRUCTURE PREDICTION//PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS//PSEUDO AMINO ACID COMPOSITION
8 235 COMPUTER SCIENCE, ARTIFICIAL INTELLIGENCE//FEATURE SELECTION//MACHINE LEARNING
9 2924 SAGE//SERIAL ANALYSIS OF GENE EXPRESSION//DIFFERENTIAL DISPLAY
10 2525 PROTEIN MICROARRAY//DIAZIRINE//PROTEIN ARRAY

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