Class information for:
Level 1: GENE PRIORITIZATION//DISEASE GENE PREDICTION//HUMAN DISEASE NETWORK

Basic class information
Class id #P Avg. number of
references		 Database coverage
of references
10975 1019 42.7 83%


Bar chart of Publication_year

Last years might be incomplete

Hierarchy of classes
The table includes all classes above and classes immediately below the current class.


Cluster id Level Cluster label #P
0 4 BIOCHEMISTRY & MOLECULAR BIOLOGY//CELL BIOLOGY//ONCOLOGY 4064930
90 3       MATHEMATICAL & COMPUTATIONAL BIOLOGY//BIOINFORMATICS//BMC BIOINFORMATICS 77178
868 2             BMC BIOINFORMATICS//MATHEMATICAL & COMPUTATIONAL BIOLOGY//BIOINFORMATICS 11572
10975 1                   GENE PRIORITIZATION//DISEASE GENE PREDICTION//HUMAN DISEASE NETWORK 1019

Terms with highest relevance score


rank Term termType Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 GENE PRIORITIZATION authKW 220735 2% 39% 19
2 DISEASE GENE PREDICTION authKW 191769 1% 80% 8
3 HUMAN DISEASE NETWORK authKW 154101 1% 86% 6
4 SKARNES GRP address 149822 0% 100% 5
5 DISEASOME authKW 147511 1% 62% 8
6 DISEASE SIMILARITY authKW 124850 0% 83% 5
7 DISEASE GENES authKW 105498 2% 20% 18
8 ZFIN address 95877 1% 40% 8
9 NETWORK MEDICINE authKW 86279 1% 24% 12
10 MOUSE INFORMAT GRP address 81561 1% 39% 7

Web of Science journal categories


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 Mathematical & Computational Biology 35944 34% 0% 351
2 Biochemical Research Methods 6422 27% 0% 273
3 Biotechnology & Applied Microbiology 6218 33% 0% 341
4 Genetics & Heredity 4725 29% 0% 294
5 Biochemistry & Molecular Biology 844 27% 0% 274
6 Medical Informatics 329 2% 0% 24
7 Multidisciplinary Sciences 189 3% 0% 26
8 Computer Science, Interdisciplinary Applications 161 4% 0% 41
9 Cell Biology 46 6% 0% 57
10 Biology 38 2% 0% 25

Address terms


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 SKARNES GRP 149822 0% 100% 5
2 ZFIN 95877 1% 40% 8
3 MOUSE INFORMAT GRP 81561 1% 39% 7
4 BIOINFORMAT SYST ENGN BASE 79903 0% 67% 4
5 SYMBIOSYS COMPUTAT SYST BIOL 59929 0% 100% 2
6 BIOINFORMAT SCI TECHNOL 54256 3% 6% 29
7 MED GENET HUMAN GENET 48917 1% 12% 14
8 OSUCCC BIOMED INFORMAT SHARED OURCE 39951 0% 67% 2
9 COMPLEX NETWORKS 35500 1% 15% 8
10 BIOINTELLIGENCE DATA MIN 33706 0% 38% 3

Journals


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 BIOINFORMATICS 25336 9% 1% 95
2 JOURNAL OF BIOMEDICAL SEMANTICS 24242 1% 6% 14
3 BMC SYSTEMS BIOLOGY 21556 3% 2% 34
4 BMC BIOINFORMATICS 20636 7% 1% 72
5 DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION 20258 2% 3% 21
6 NUCLEIC ACIDS RESEARCH 7812 10% 0% 102
7 BIODATA MINING 6978 1% 3% 7
8 BMC GENOMICS 5470 4% 0% 42
9 JOURNAL OF BIOMEDICAL INFORMATICS 4560 1% 1% 15
10 PLOS COMPUTATIONAL BIOLOGY 3696 2% 1% 24

Author Key Words


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class		 LCSH search Wikipedia search
1 GENE PRIORITIZATION 220735 2% 39% 19 Search GENE+PRIORITIZATION Search GENE+PRIORITIZATION
2 DISEASE GENE PREDICTION 191769 1% 80% 8 Search DISEASE+GENE+PREDICTION Search DISEASE+GENE+PREDICTION
3 HUMAN DISEASE NETWORK 154101 1% 86% 6 Search HUMAN+DISEASE+NETWORK Search HUMAN+DISEASE+NETWORK
4 DISEASOME 147511 1% 62% 8 Search DISEASOME Search DISEASOME
5 DISEASE SIMILARITY 124850 0% 83% 5 Search DISEASE+SIMILARITY Search DISEASE+SIMILARITY
6 DISEASE GENES 105498 2% 20% 18 Search DISEASE+GENES Search DISEASE+GENES
7 NETWORK MEDICINE 86279 1% 24% 12 Search NETWORK+MEDICINE Search NETWORK+MEDICINE
8 DISEASE GENE IDENTIFICATION 68096 0% 45% 5 Search DISEASE+GENE+IDENTIFICATION Search DISEASE+GENE+IDENTIFICATION
9 CANDIDATE DISEASE GENES 67419 0% 75% 3 Search CANDIDATE+DISEASE+GENES Search CANDIDATE+DISEASE+GENES
10 CANDIDATE GENE PREDICTION 67419 0% 75% 3 Search CANDIDATE+GENE+PREDICTION Search CANDIDATE+GENE+PREDICTION

Core articles
The table includes core articles in the class. The following variables is taken into account for the relevance score of an article in a cluster c:
(1) Number of references referring to publications in the class.
(2) Share of total number of active references referring to publications in the class.
(3) Age of the article. New articles get higher score than old articles.
(4) Citation rate, normalized to year.


Rank Reference # ref.
in cl.		 Shr. of ref. in
cl.		 Citations
1 DONCHEVA, NT , KACPROWSKI, T , ALBRECHT, M , (2012) RECENT APPROACHES TO THE PRIORITIZATION OF CANDIDATE DISEASE GENES.WILEY INTERDISCIPLINARY REVIEWS-SYSTEMS BIOLOGY AND MEDICINE. VOL. 4. ISSUE 5. P. 429-442 66 62% 18
2 GILL, N , SINGH, S , ASERI, TC , (2014) COMPUTATIONAL DISEASE GENE PRIORITIZATION: AN APPRAISAL.JOURNAL OF COMPUTATIONAL BIOLOGY. VOL. 21. ISSUE 6. P. 456 -465 40 87% 8
3 PIRO, RM , DI CUNTO, F , (2012) COMPUTATIONAL APPROACHES TO DISEASE-GENE PREDICTION: RATIONALE, CLASSIFICATION AND SUCCESSES.FEBS JOURNAL. VOL. 279. ISSUE 5. P. 678 -696 51 50% 51
4 ZHU, C , WU, C , ARONOW, BJ , JEGGA, AG , (2014) COMPUTATIONAL APPROACHES FOR HUMAN DISEASE GENE PREDICTION AND RANKING.SYSTEMS ANALYSIS OF HUMAN MULTIGENE DISORDERS. VOL. 799. ISSUE . P. 69-84 43 66% 2
5 MOREAU, Y , TRANCHEVENT, LC , (2012) COMPUTATIONAL TOOLS FOR PRIORITIZING CANDIDATE GENES: BOOSTING DISEASE GENE DISCOVERY.NATURE REVIEWS GENETICS. VOL. 13. ISSUE 8. P. 523-536 46 41% 140
6 XIAO, Y , XU, CH , PING, YY , GUAN, JX , FAN, HH , LI, YQ , LI, X , (2011) DIFFERENTIAL EXPRESSION PATTERN-BASED PRIORITIZATION OF CANDIDATE GENES THROUGH INTEGRATING DISEASE-SPECIFIC EXPRESSION DATA.GENOMICS. VOL. 98. ISSUE 1. P. 64-71 35 80% 1
7 WANG, JX , LI, M , PENG, W , WU, FX , LAN, W , (2015) COMPUTATIONAL APPROACHES FOR PRIORITIZING CANDIDATE DISEASE GENES BASED ON PPI NETWORKS.TSINGHUA SCIENCE AND TECHNOLOGY. VOL. 20. ISSUE 5. P. 500 -512 48 48% 1
8 BARABASI, AL , GULBAHCE, N , LOSCALZO, J , (2011) NETWORK MEDICINE: A NETWORK-BASED APPROACH TO HUMAN DISEASE.NATURE REVIEWS GENETICS. VOL. 12. ISSUE 1. P. 56 -68 31 26% 1018
9 ZHANG, SW , SHAO, DD , ZHANG, SY , WANG, YB , (2014) PRIORITIZATION OF CANDIDATE DISEASE GENES BY ENLARGING THE SEED SET AND FUSING INFORMATION OF THE NETWORK TOPOLOGY AND GENE EXPRESSION.MOLECULAR BIOSYSTEMS. VOL. 10. ISSUE 6. P. 1400 -1408 44 49% 4
10 TRANCHEVENT, LC , CAPDEVILA, FB , NITSCH, D , DE MOOR, B , DE CAUSMAECKER, P , MOREAU, Y , (2011) A GUIDE TO WEB TOOLS TO PRIORITIZE CANDIDATE GENES.BRIEFINGS IN BIOINFORMATICS. VOL. 12. ISSUE 1. P. 22-32 34 57% 66

Classes with closest relation at Level 1


Rank Class id link
1 9574 GENE SET ANALYSIS//GENE ONTOLOGY//BMC BIOINFORMATICS
2 681 PROTEIN INTERACTION NETWORK//PROTEIN PROTEIN INTERACTION NETWORK//ESSENTIAL PROTEINS
3 6856 NETWORK PHARMACOLOGY//DRUG REPOSITIONING//SYSTEMS PHARMACOLOGY
4 20966 DYNAMICAL NETWORK BIOMARKER//EDGE BIOMARKER//ABORAT INNOVAT MATH MODELLING
5 16858 MAMMALIAN GENET UNIT//ENU MUTAGENESIS//PHENOTYPE DRIVEN SCREEN
6 11331 NSSNPS//POLYPHEN//LSDB
7 4183 TEXT MIN//TEXT MINING//BIOMEDICAL TEXT MINING
8 18864 DATABASE LIFE SCI//DDBJ//EMTRAIN
9 33207 GRP GENOM REGULAT CELL SIGNALING SYST//INSILICO MED INC//INTRACELLULAR SIGNALING PATHWAY ACTIVATION
10 3139 JOURNAL OF THE AMERICAN MEDICAL INFORMATICS ASSOCIATION//SNOMED CT//MEDICAL INFORMATICS

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