Class information for:
Level 1: BMC BIOINFORMATICS//MICROARRAY IMAGE//BIOINFORMATICS

Basic class information
Class id #P Avg. number of
references		 Database coverage
of references
2901 2118 29.9 74%


Bar chart of Publication_year

Last years might be incomplete

Hierarchy of classes
The table includes all classes above and classes immediately below the current class.


Cluster id Level Cluster label #P
0 4 BIOCHEMISTRY & MOLECULAR BIOLOGY//CELL BIOLOGY//ONCOLOGY 4064930
90 3       MATHEMATICAL & COMPUTATIONAL BIOLOGY//BIOINFORMATICS//BMC BIOINFORMATICS 77178
868 2             BMC BIOINFORMATICS//MATHEMATICAL & COMPUTATIONAL BIOLOGY//BIOINFORMATICS 11572
2901 1                   BMC BIOINFORMATICS//MICROARRAY IMAGE//BIOINFORMATICS 2118

Terms with highest relevance score


rank Term termType Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 BMC BIOINFORMATICS journal 189513 15% 4% 314
2 MICROARRAY IMAGE authKW 129738 0% 100% 9
3 BIOINFORMATICS journal 107650 13% 3% 282
4 MATHEMATICAL & COMPUTATIONAL BIOLOGY WoSSC 105343 41% 1% 865
5 MICROARRAY authKW 102377 15% 2% 325
6 MICROARRAY IMAGE PROCESSING authKW 86492 0% 100% 6
7 MICROARRAY EXPERIMENTS authKW 77835 0% 60% 9
8 DYE BIAS authKW 57661 0% 100% 4
9 BATCH EFFECT REMOVAL authKW 46127 0% 80% 4
10 MICROARRAY GRIDDING authKW 46127 0% 80% 4

Web of Science journal categories


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 Mathematical & Computational Biology 105343 41% 1% 865
2 Biochemical Research Methods 30034 40% 0% 840
3 Biotechnology & Applied Microbiology 23524 45% 0% 944
4 Statistics & Probability 5323 13% 0% 267
5 Genetics & Heredity 2726 16% 0% 338
6 Medical Informatics 875 3% 0% 56
7 Biochemistry & Molecular Biology 777 20% 0% 418
8 Computer Science, Interdisciplinary Applications 733 6% 0% 119
9 Biology 147 3% 0% 65
10 Multidisciplinary Sciences 115 2% 0% 32

Address terms


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 ENSEMBL TEAM 28831 0% 100% 2
2 INFORMAT NANTES ATLANTIQUE LINA 28831 0% 100% 2
3 MAX MCGEE JUVENILE DIABET 26410 1% 17% 11
4 IAN POTTER FDN CANC GENOM PREDICT MED 21620 0% 50% 3
5 BIOMOL ANAL IMAGING 19219 0% 67% 2
6 TRANSCRIPT GENOM CORE 19219 0% 67% 2
7 ADV MAT CP NANOSAFETY 14415 0% 100% 1
8 AI COMO 14415 0% 100% 1
9 AIRCRAFT SPARE MANAGEMENT 14415 0% 100% 1
10 ANAT EMBRIOL GENETI ANIM 14415 0% 100% 1

Journals


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 BMC BIOINFORMATICS 189513 15% 4% 314
2 BIOINFORMATICS 107650 13% 3% 282
3 STATISTICAL APPLICATIONS IN GENETICS AND MOLECULAR BIOLOGY 45599 2% 8% 40
4 BMC GENOMICS 14649 5% 1% 99
5 BIOSTATISTICS 12573 1% 3% 26
6 JOURNAL OF COMPUTATIONAL BIOLOGY 8837 1% 2% 31
7 OMICS-A JOURNAL OF INTEGRATIVE BIOLOGY 7387 1% 3% 19
8 COMPARATIVE AND FUNCTIONAL GENOMICS 6319 1% 3% 13
9 NUCLEIC ACIDS RESEARCH 6101 6% 0% 131
10 GENOME BIOLOGY 5863 2% 1% 35

Author Key Words


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class		 LCSH search Wikipedia search
1 MICROARRAY IMAGE 129738 0% 100% 9 Search MICROARRAY+IMAGE Search MICROARRAY+IMAGE
2 MICROARRAY 102377 15% 2% 325 Search MICROARRAY Search MICROARRAY
3 MICROARRAY IMAGE PROCESSING 86492 0% 100% 6 Search MICROARRAY+IMAGE+PROCESSING Search MICROARRAY+IMAGE+PROCESSING
4 MICROARRAY EXPERIMENTS 77835 0% 60% 9 Search MICROARRAY+EXPERIMENTS Search MICROARRAY+EXPERIMENTS
5 DYE BIAS 57661 0% 100% 4 Search DYE+BIAS Search DYE+BIAS
6 BATCH EFFECT REMOVAL 46127 0% 80% 4 Search BATCH+EFFECT+REMOVAL Search BATCH+EFFECT+REMOVAL
7 MICROARRAY GRIDDING 46127 0% 80% 4 Search MICROARRAY+GRIDDING Search MICROARRAY+GRIDDING
8 SPOT SEGMENTATION 46127 0% 80% 4 Search SPOT+SEGMENTATION Search SPOT+SEGMENTATION
9 CDNA MICROARRAY IMAGES 43246 0% 100% 3 Search CDNA+MICROARRAY+IMAGES Search CDNA+MICROARRAY+IMAGES
10 CODELINK 43246 0% 100% 3 Search CODELINK Search CODELINK

Core articles
The table includes core articles in the class. The following variables is taken into account for the relevance score of an article in a cluster c:
(1) Number of references referring to publications in the class.
(2) Share of total number of active references referring to publications in the class.
(3) Age of the article. New articles get higher score than old articles.
(4) Citation rate, normalized to year.


Rank Reference # ref.
in cl.		 Shr. of ref. in
cl.		 Citations
1 YAUK, CL , BERNDT, ML , (2007) REVIEW OF THE LITERATURE EXAMINING THE CORRELATION AMONG DNA MICROARRAY TECHNOLOGIES.ENVIRONMENTAL AND MOLECULAR MUTAGENESIS. VOL. 48. ISSUE 5. P. 380 -394 59 72% 37
2 ARCHER, KJ , DUMUR, CI , TAYLOR, GS , CHAPLIN, MD , GUISEPPI-ELIE, A , GRANT, G , FERREIRA-GONZALEZ, A , GARRETT, CT , (2007) APPLICATION OF A CORRELATION CORRECTION FACTOR IN A MICROARRAY CROSS-PLATFORM REPRODUCIBILITY STUDY.BMC BIOINFORMATICS. VOL. 8. ISSUE . P. - 40 93% 3
3 LI, WT , (2012) VOLCANO PLOTS IN ANALYZING DIFFERENTIAL EXPRESSIONS WITH MRNA MICROARRAYS.JOURNAL OF BIOINFORMATICS AND COMPUTATIONAL BIOLOGY. VOL. 10. ISSUE 6. P. - 56 53% 21
4 LAZAR, C , MEGANCK, S , TAMINAU, J , STEENHOFF, D , COLETTA, A , MOLTER, C , WEISS-SOLIS, DY , DUQUE, R , BERSINI, H , NOWE, A , (2013) BATCH EFFECT REMOVAL METHODS FOR MICROARRAY GENE EXPRESSION DATA INTEGRATION: A SURVEY.BRIEFINGS IN BIOINFORMATICS. VOL. 14. ISSUE 4. P. 469-490 36 73% 32
5 MURIE, C , WOODY, O , LEE, AY , NADON, R , (2009) COMPARISON OF SMALL N STATISTICAL TESTS OF DIFFERENTIAL EXPRESSION APPLIED TO MICROARRAYS.BMC BIOINFORMATICS. VOL. 10. ISSUE . P. - 35 90% 32
6 SHI, LM , REID, LH , JONES, WD , SHIPPY, R , WARRINGTON, JA , BAKER, SC , COLLINS, PJ , DE LONGUEVILLE, F , KAWASAKI, ES , LEE, KY , ET AL (2006) THE MICROARRAY QUALITY CONTROL (MAQC) PROJECT SHOWS INTER- AND INTRAPLATFORM REPRODUCIBILITY OF GENE EXPRESSION MEASUREMENTS.NATURE BIOTECHNOLOGY. VOL. 24. ISSUE 9. P. 1151 -1161 22 73% 995
7 TSENG, GC , GHOSH, D , FEINGOLD, E , (2012) COMPREHENSIVE LITERATURE REVIEW AND STATISTICAL CONSIDERATIONS FOR MICROARRAY META-ANALYSIS.NUCLEIC ACIDS RESEARCH. VOL. 40. ISSUE 9. P. 3785 -3799 52 44% 82
8 KARAKACH, TK , FLIGHT, RM , DOUGLAS, SE , WENTZELL, PD , (2010) AN INTRODUCTION TO DNA MICROARRAYS FOR GENE EXPRESSION ANALYSIS.CHEMOMETRICS AND INTELLIGENT LABORATORY SYSTEMS. VOL. 104. ISSUE 1. P. 28 -52 56 50% 14
9 HOLLOWAY, AJ , OSHLACK, A , DIYAGAMA, DS , BOWTELL, DDL , SMYTH, GK , (2006) STATISTICAL ANALYSIS OF AN RNA TITRATION SERIES EVALUATES MICROARRAY PRECISION AND SENSITIVITY ON A WHOLE-ARRAY BASIS.BMC BIOINFORMATICS. VOL. 7. ISSUE . P. - 40 78% 9
10 KUO, WP , LIU, F , TRIMARCHI, J , PUNZO, C , LOMBARDI, M , SARANG, J , WHIPPLE, ME , MAYSURIA, M , SERIKAWA, K , LEE, SY , ET AL (2006) A SEQUENCE-ORIENTED COMPARISON OF GENE EXPRESSION MEASUREMENTS ACROSS DIFFERENT HYBRIDIZATION-BASED TECHNOLOGIES.NATURE BIOTECHNOLOGY. VOL. 24. ISSUE 7. P. 832 -840 35 76% 100

Classes with closest relation at Level 1


Rank Class id link
1 37522 DIFFERENTIAL GENE EXPRESSION DETECTION//CANC GENOME DISCOVERY CCGD//CANCER GENE ACTIVATION HETEROGENEITY
2 7323 BICLUSTERING//GENE EXPRESSION DATA//GENE EXPRESSION DATA ANALYSIS
3 5338 FALSE DISCOVERY RATE//MULTIPLE TESTING//FAMILYWISE ERROR RATE
4 9574 GENE SET ANALYSIS//GENE ONTOLOGY//BMC BIOINFORMATICS
5 3649 SEQUENCING BY HYBRIDIZATION//DNA CHIP//DNA GRAPHS
6 20966 DYNAMICAL NETWORK BIOMARKER//EDGE BIOMARKER//ABORAT INNOVAT MATH MODELLING
7 1997 FEATURE SELECTION//GENE SELECTION//CANCER CLASSIFICATION
8 22399 LUNG CANCER DIAGNOSIS AND PROGNOSIS//AIRWAY EPITHELIUM DEVELOPMENT//ANAT CYTOL PATHOL ALBERT BONNIOT
9 14486 TOXICOGENOMICS//CELLULAR MOL TOXICOL//TOXICOGENOM INFORMAT PROJECT
10 19783 EXPRESSION EVOLUTION//TRANS REGULATION//CIS REGULATORY DIVERGENCE

Go to start page