Class information for:
Level 2: BIOINFORMATICS//COPY NUMBER VARIATION//NEXT GENERATION SEQUENCING

Basic class information
Class id #P Avg. number of
references		 Database coverage
of references
1101 9808 39.0 86%


Bar chart of Publication_year

Last years might be incomplete

Hierarchy of classes
The table includes all classes above and classes immediately below the current class.


Cluster id Level Cluster label #P
0 4 BIOCHEMISTRY & MOLECULAR BIOLOGY//CELL BIOLOGY//ONCOLOGY 4064930
90 3       MATHEMATICAL & COMPUTATIONAL BIOLOGY//BIOINFORMATICS//BMC BIOINFORMATICS 77178
1101 2             BIOINFORMATICS//COPY NUMBER VARIATION//NEXT GENERATION SEQUENCING 9808
2013 1                   GENOME ASSEMBLY//BIOINFORMATICS//VARIANT CALLING 2386
3965 1                   EVOLUT CANC//CANCER GENOME//CANCER GENOMICS 1873
5569 1                   COPY NUMBER VARIATION//COPY NUMBER VARIANTS//STRUCTURAL VARIATION 1604
7400 1                   RNA SEQ//TRANSCRIPTOME ASSEMBLY//RNA SEQUENCING 1371
12230 1                   DNA COPY NUMBER//HLTH SOLUT GRP//ARRAY CGH 922
16413 1                   WHOLE GENOME AMPLIFICATION//MULTIPLE DISPLACEMENT AMPLIFICATION//PHI29 DNA POLYMERASE 655
19243 1                   TRANS SPLICING//SPLICED LEADER//CHIMERIC RNA 515
19974 1                   SINGLE CELL RNA SEQ//SINGLE CELL RNA SEQUENCING//SINGLE CELL TRANSCRIPTOMICS 482

Terms with highest relevance score


rank Term termType Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with term
in class
1 BIOINFORMATICS journal 238336 9% 9% 904
2 COPY NUMBER VARIATION authKW 216896 3% 26% 264
3 NEXT GENERATION SEQUENCING authKW 167773 5% 11% 485
4 RNA SEQ authKW 141260 3% 14% 330
5 MATHEMATICAL & COMPUTATIONAL BIOLOGY WoSSC 140936 22% 2% 2168
6 WHOLE GENOME AMPLIFICATION authKW 127831 1% 46% 90
7 BMC BIOINFORMATICS journal 97394 5% 7% 486
8 BIOTECHNOLOGY & APPLIED MICROBIOLOGY WoSSC 73850 37% 1% 3628
9 BMC GENOMICS journal 72239 5% 5% 473
10 CANCER GENOME authKW 66074 0% 59% 36

Web of Science journal categories


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with term
in class
1 Mathematical & Computational Biology 140936 22% 2% 2168
2 Biotechnology & Applied Microbiology 73850 37% 1% 3628
3 Genetics & Heredity 65066 34% 1% 3354
4 Biochemical Research Methods 56422 26% 1% 2515
5 Biochemistry & Molecular Biology 4806 22% 0% 2153
6 Oncology 3440 12% 0% 1140
7 Statistics & Probability 1183 3% 0% 315
8 Cell Biology 930 7% 0% 693
9 Multidisciplinary Sciences 684 2% 0% 164
10 Pathology 419 3% 0% 252

Address terms


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 EVOLUT CANC 42853 0% 38% 36
2 GENOME SCI 34102 2% 5% 239
3 BIOINFORMAT COMPUTAT BIOL 31808 1% 8% 131
4 SIMONS QUANTITAT BIOL 29632 0% 53% 18
5 CANC GENOME PROJECT 27724 0% 21% 43
6 INTEGRATED GENOME POLYMORPHISM 21431 0% 34% 20
7 PERSONALIZED CANC THER Y 18440 0% 25% 24
8 CANC GENOME DISCOVERY 17058 0% 17% 33
9 PROGRAM COMPUTAT BIOL BIOINFORMAT 16929 0% 12% 47
10 STANLEY COGNIT GENOM 16649 0% 36% 15

Journals


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 BIOINFORMATICS 238336 9% 9% 904
2 BMC BIOINFORMATICS 97394 5% 7% 486
3 BMC GENOMICS 72239 5% 5% 473
4 GENOME RESEARCH 56967 2% 12% 159
5 GENOME BIOLOGY 56797 2% 8% 234
6 GIGASCIENCE 32356 0% 27% 39
7 NATURE METHODS 28996 1% 7% 126
8 BIOTECHFORUM ( BTF ) 18892 1% 5% 126
9 GENOME MEDICINE 18769 1% 10% 63
10 BRIEFINGS IN BIOINFORMATICS 15476 1% 8% 59

Author Key Words


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class		 LCSH search Wikipedia search
1 COPY NUMBER VARIATION 216896 3% 26% 264 Search COPY+NUMBER+VARIATION Search COPY+NUMBER+VARIATION
2 NEXT GENERATION SEQUENCING 167773 5% 11% 485 Search NEXT+GENERATION+SEQUENCING Search NEXT+GENERATION+SEQUENCING
3 RNA SEQ 141260 3% 14% 330 Search RNA+SEQ Search RNA+SEQ
4 WHOLE GENOME AMPLIFICATION 127831 1% 46% 90 Search WHOLE+GENOME+AMPLIFICATION Search WHOLE+GENOME+AMPLIFICATION
5 CANCER GENOME 66074 0% 59% 36 Search CANCER+GENOME Search CANCER+GENOME
6 GENOME ASSEMBLY 62503 1% 37% 54 Search GENOME+ASSEMBLY Search GENOME+ASSEMBLY
7 MULTIPLE DISPLACEMENT AMPLIFICATION 59222 0% 48% 40 Search MULTIPLE+DISPLACEMENT+AMPLIFICATION Search MULTIPLE+DISPLACEMENT+AMPLIFICATION
8 TRANS SPLICING 55910 1% 25% 71 Search TRANS+SPLICING Search TRANS+SPLICING
9 VARIANT CALLING 55333 0% 68% 26 Search VARIANT+CALLING Search VARIANT+CALLING
10 COPY NUMBER VARIANTS 48012 1% 23% 68 Search COPY+NUMBER+VARIANTS Search COPY+NUMBER+VARIANTS

Core articles
The table includes core articles in the class. The following variables is taken into account for the relevance score of an article in a cluster c:
(1) Number of references referring to publications in the class.
(2) Share of total number of active references referring to publications in the class.
(3) Age of the article. New articles get higher score than old articles.
(4) Citation rate, normalized to year.


Rank Reference # ref. in
cl.		 Shr. of ref. in
cl.		 Citations
1 CONESA, A , MADRIGAL, P , TARAZONA, S , GOMEZ-CABRERO, D , CERVERA, A , MCPHERSON, A , SZCZESNIAK, MW , GAFFNEY, DJ , ELO, LL , ZHANG, XG , ET AL (2016) A SURVEY OF BEST PRACTICES FOR RNA-SEQ DATA ANALYSIS.GENOME BIOLOGY. VOL. 17. ISSUE . P. - 121 63% 23
2 LAEHNEMANN, D , BORKHARDT, A , MCHARDY, AC , (2016) DENOISING DNA DEEP SEQUENCING DATA-HIGH-THROUGHPUT SEQUENCING ERRORS AND THEIR CORRECTION.BRIEFINGS IN BIOINFORMATICS. VOL. 17. ISSUE 1. P. 154 -179 78 90% 16
3 TRAPNELL, C , ROBERTS, A , GOFF, L , PERTEA, G , KIM, D , KELLEY, DR , PIMENTEL, H , SALZBERG, SL , RINN, JL , PACHTER, L , (2012) DIFFERENTIAL GENE AND TRANSCRIPT EXPRESSION ANALYSIS OF RNA-SEQ EXPERIMENTS WITH TOPHAT AND CUFFLINKS.NATURE PROTOCOLS. VOL. 7. ISSUE 3. P. 562 -578 34 83% 2089
4 GAWAD, C , KOH, W , QUAKE, SR , (2016) SINGLE-CELL GENOME SEQUENCING: CURRENT STATE OF THE SCIENCE.NATURE REVIEWS GENETICS. VOL. 17. ISSUE 3. P. 175 -188 63 59% 49
5 METZKER, ML , (2010) APPLICATIONS OF NEXT-GENERATION SEQUENCING SEQUENCING TECHNOLOGIES - THE NEXT GENERATION.NATURE REVIEWS GENETICS. VOL. 11. ISSUE 1. P. 31 -46 54 59% 2273
6 ALKAN, C , COE, BP , EICHLER, EE , (2011) APPLICATIONS OF NEXT-GENERATION SEQUENCING GENOME STRUCTURAL VARIATION DISCOVERY AND GENOTYPING.NATURE REVIEWS GENETICS. VOL. 12. ISSUE 5. P. 363 -375 78 74% 371
7 BACHER, R , KENDZIORSKI, C , (2016) DESIGN AND COMPUTATIONAL ANALYSIS OF SINGLE-CELL RNA-SEQUENCING EXPERIMENTS.GENOME BIOLOGY. VOL. 17. ISSUE . P. - 77 92% 6
8 DING, L , WENDL, MC , MCMICHAEL, JF , RAPHAEL, BJ , (2014) EXPANDING THE COMPUTATIONAL TOOLBOX FOR MINING CANCER GENOMES.NATURE REVIEWS GENETICS. VOL. 15. ISSUE 8. P. 556 -570 102 66% 54
9 HAAS, BJ , PAPANICOLAOU, A , YASSOUR, M , GRABHERR, M , BLOOD, PD , BOWDEN, J , COUGER, MB , ECCLES, D , LI, B , LIEBER, M , ET AL (2013) DE NOVO TRANSCRIPT SEQUENCE RECONSTRUCTION FROM RNA-SEQ USING THE TRINITY PLATFORM FOR REFERENCE GENERATION AND ANALYSIS.NATURE PROTOCOLS. VOL. 8. ISSUE 8. P. 1494 -1512 36 84% 734
10 LIU, GE , BICKHART, DM , (2012) COPY NUMBER VARIATION IN THE CATTLE GENOME.FUNCTIONAL & INTEGRATIVE GENOMICS. VOL. 12. ISSUE 4. P. 609 -624 117 80% 17

Classes with closest relation at Level 2


Rank Class id link
1 868 BMC BIOINFORMATICS//MATHEMATICAL & COMPUTATIONAL BIOLOGY//BIOINFORMATICS
2 126 MOLECULAR BIOLOGY AND EVOLUTION//BIOINFORMATICS//MATHEMATICAL & COMPUTATIONAL BIOLOGY
3 2179 REFERENCE GENES//GENORM//NORMFINDER
4 2924 SAGE//SERIAL ANALYSIS OF GENE EXPRESSION//DIFFERENTIAL DISPLAY
5 1039 GENETIC TESTING//BIOBANK//JOURNAL OF GENETIC COUNSELING
6 1717 GEFITINIB//EGFR MUTATION//MIDKINE
7 257 GENETIC EPIDEMIOLOGY//HUMAN HEREDITY//GENETICS & HEREDITY
8 3084 CHROMOSOME TERRITORY//NUCLEAR ARCHITECTURE//NUCLEAR ORGANIZATION
9 2606 FHIT//WWOX//FRAGILE SITES
10 395 GENETICS & HEREDITY//ANNALES DE GENETIQUE//HOLOPROSENCEPHALY

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