Class information for:
Level 1: PROTEIN INTERACTION NETWORK//PROTEIN PROTEIN INTERACTION NETWORK//ESSENTIAL PROTEINS

Basic class information
Class id #P Avg. number of
references		 Database coverage
of references
681 3166 44.5 84%


Bar chart of Publication_year

Last years might be incomplete

Hierarchy of classes
The table includes all classes above and classes immediately below the current class.


Cluster id Level Cluster label #P
0 4 BIOCHEMISTRY & MOLECULAR BIOLOGY//CELL BIOLOGY//ONCOLOGY 4064930
90 3       MATHEMATICAL & COMPUTATIONAL BIOLOGY//BIOINFORMATICS//BMC BIOINFORMATICS 77178
868 2             BMC BIOINFORMATICS//MATHEMATICAL & COMPUTATIONAL BIOLOGY//BIOINFORMATICS 11572
681 1                   PROTEIN INTERACTION NETWORK//PROTEIN PROTEIN INTERACTION NETWORK//ESSENTIAL PROTEINS 3166

Terms with highest relevance score


rank Term termType Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with term
in class
1 PROTEIN INTERACTION NETWORK authKW 431537 3% 43% 103
2 PROTEIN PROTEIN INTERACTION NETWORK authKW 306786 3% 30% 106
3 ESSENTIAL PROTEINS authKW 271872 1% 83% 34
4 NETWORK ALIGNMENT authKW 206744 1% 79% 27
5 MATHEMATICAL & COMPUTATIONAL BIOLOGY WoSSC 146610 39% 1% 1248
6 PROTEIN COMPLEX authKW 144513 4% 13% 114
7 PROTEIN PROTEIN INTERACTION authKW 142692 10% 5% 309
8 BIOINFORMATICS journal 138391 12% 4% 391
9 PPI NETWORK authKW 137812 1% 53% 27
10 BMC BIOINFORMATICS journal 112444 9% 4% 296

Web of Science journal categories


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with term
in class
1 Mathematical & Computational Biology 146610 39% 1% 1248
2 Biochemical Research Methods 50523 42% 0% 1330
3 Biotechnology & Applied Microbiology 23452 37% 0% 1162
4 Biochemistry & Molecular Biology 3534 30% 0% 960
5 Genetics & Heredity 1887 11% 0% 360
6 Computer Science, Interdisciplinary Applications 974 5% 0% 169
7 Statistics & Probability 625 4% 0% 125
8 Biology 310 4% 0% 111
9 Multidisciplinary Sciences 183 2% 0% 49
10 Cell Biology 174 6% 0% 188

Address terms


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 CCSB 34808 1% 21% 17
2 INTELLIGENT DATA 26242 0% 39% 7
3 NW COMPLEX 24102 0% 50% 5
4 LEWIS SIGLER INTEGRAT GENOM 23816 1% 6% 45
5 BIOINFORMAT MIPS 23136 0% 40% 6
6 BIOINFORMAT 22304 6% 1% 180
7 SYST BIOL INITIAT 21900 0% 23% 10
8 BIOINFORMAT COMPUTAT LIFE SCI 20413 0% 35% 6
9 DATABASE GRP DBRGCIPCE 19286 0% 100% 2
10 MPBA 19286 0% 100% 2

Journals


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 BIOINFORMATICS 138391 12% 4% 391
2 BMC BIOINFORMATICS 112444 9% 4% 296
3 BMC SYSTEMS BIOLOGY 79392 4% 7% 115
4 IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS 31638 2% 5% 61
5 JOURNAL OF COMPUTATIONAL BIOLOGY 17295 2% 3% 53
6 PLOS COMPUTATIONAL BIOLOGY 16391 3% 2% 89
7 CURRENT BIOINFORMATICS 14699 1% 6% 26
8 INTERNATIONAL JOURNAL OF DATA MINING AND BIOINFORMATICS 12842 1% 6% 24
9 GENOME BIOLOGY 10783 2% 2% 58
10 NUCLEIC ACIDS RESEARCH 10724 7% 1% 212

Author Key Words


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class		 LCSH search Wikipedia search
1 PROTEIN INTERACTION NETWORK 431537 3% 43% 103 Search PROTEIN+INTERACTION+NETWORK Search PROTEIN+INTERACTION+NETWORK
2 PROTEIN PROTEIN INTERACTION NETWORK 306786 3% 30% 106 Search PROTEIN+PROTEIN+INTERACTION+NETWORK Search PROTEIN+PROTEIN+INTERACTION+NETWORK
3 ESSENTIAL PROTEINS 271872 1% 83% 34 Search ESSENTIAL+PROTEINS Search ESSENTIAL+PROTEINS
4 NETWORK ALIGNMENT 206744 1% 79% 27 Search NETWORK+ALIGNMENT Search NETWORK+ALIGNMENT
5 PROTEIN COMPLEX 144513 4% 13% 114 Search PROTEIN+COMPLEX Search PROTEIN+COMPLEX
6 PROTEIN PROTEIN INTERACTION 142692 10% 5% 309 Search PROTEIN+PROTEIN+INTERACTION Search PROTEIN+PROTEIN+INTERACTION
7 PPI NETWORK 137812 1% 53% 27 Search PPI+NETWORK Search PPI+NETWORK
8 INTERACTOME 103527 2% 18% 60 Search INTERACTOME Search INTERACTOME
9 PROTEIN FUNCTION PREDICTION 100120 1% 27% 38 Search PROTEIN+FUNCTION+PREDICTION Search PROTEIN+FUNCTION+PREDICTION
10 PROTEIN PROTEIN INTERACTION PPI NETWORK 81474 0% 65% 13 Search PROTEIN+PROTEIN+INTERACTION+PPI+NETWORK Search PROTEIN+PROTEIN+INTERACTION+PPI+NETWORK

Core articles
The table includes core articles in the class. The following variables is taken into account for the relevance score of an article in a cluster c:
(1) Number of references referring to publications in the class.
(2) Share of total number of active references referring to publications in the class.
(3) Age of the article. New articles get higher score than old articles.
(4) Citation rate, normalized to year.


Rank Reference # ref. in
cl.		 Shr. of ref. in
cl.		 Citations
1 CHEN, BL , FAN, WW , LIU, J , WU, FX , (2014) IDENTIFYING PROTEIN COMPLEXES AND FUNCTIONAL MODULES-FROM STATIC PPI NETWORKS TO DYNAMIC PPI NETWORKS.BRIEFINGS IN BIOINFORMATICS. VOL. 15. ISSUE 2. P. 177 -194 73 87% 23
2 SNIDER, J , KOTLYAR, M , SARAON, P , YAO, Z , JURISICA, I , STAGLJAR, I , (2015) FUNDAMENTALS OF PROTEIN INTERACTION NETWORK MAPPING.MOLECULAR SYSTEMS BIOLOGY. VOL. 11. ISSUE 12. P. - 110 57% 9
3 ZAHIRI, J , BOZORGMEHR, JH , MASOUDI-NEJAD, A , (2013) COMPUTATIONAL PREDICTION OF PROTEIN-PROTEIN INTERACTION NETWORKS: ALGORITHMS AND RESOURCES.CURRENT GENOMICS. VOL. 14. ISSUE 6. P. 397-414 90 72% 13
4 SHARAN, R , ULITSKY, I , SHAMIR, R , (2007) NETWORK-BASED PREDICTION OF PROTEIN FUNCTION.MOLECULAR SYSTEMS BIOLOGY. VOL. 3. ISSUE . P. - 59 73% 388
5 HERICHE, JK , MORILLA, I , RANEA, JA , ORENGO, CA , LEES, JG , (2011) SYSTEMATIC COMPUTATIONAL PREDICTION OF PROTEIN INTERACTION NETWORKS.PHYSICAL BIOLOGY. VOL. 8. ISSUE 3. P. - 86 69% 18
6 BHOWMICK, SS , SEAH, BS , (2016) CLUSTERING AND SUMMARIZING PROTEIN-PROTEIN INTERACTION NETWORKS: A SURVEY.IEEE TRANSACTIONS ON KNOWLEDGE AND DATA ENGINEERING. VOL. 28. ISSUE 3. P. 638 -658 70 71% 1
7 SRIHARI, S , YONG, CH , PATIL, A , WONG, L , (2015) METHODS FOR PROTEIN COMPLEX PREDICTION AND THEIR CONTRIBUTIONS TOWARDS UNDERSTANDING THE ORGANISATION, FUNCTION AND DYNAMICS OF COMPLEXES.FEBS LETTERS. VOL. 589. ISSUE 19. P. 2590 -2602 76 62% 8
8 VITAL-LOPEZ, FG , MEMISEVIC, V , DUTTA, B , (2012) TUTORIAL ON BIOLOGICAL NETWORKS.WILEY INTERDISCIPLINARY REVIEWS-DATA MINING AND KNOWLEDGE DISCOVERY. VOL. 2. ISSUE 4. P. 298 -325 108 51% 0
9 PAN, A , LAHIRI, C , RAJENDIRAN, A , SHANMUGHAM, B , (2016) COMPUTATIONAL ANALYSIS OF PROTEIN INTERACTION NETWORKS FOR INFECTIOUS DISEASES.BRIEFINGS IN BIOINFORMATICS. VOL. 17. ISSUE 3. P. 517 -526 64 72% 1
10 LEWIS, ACF , SAEED, R , DEANE, CM , (2010) PREDICTING PROTEIN-PROTEIN INTERACTIONS IN THE CONTEXT OF PROTEIN EVOLUTION.MOLECULAR BIOSYSTEMS. VOL. 6. ISSUE 1. P. 55 -64 79 66% 23

Classes with closest relation at Level 1


Rank Class id link
1 10975 GENE PRIORITIZATION//DISEASE GENE PREDICTION//HUMAN DISEASE NETWORK
2 21530 NETWORK MOTIFS//SUBGRAPH SAMPLING//PROGRAMA GENOM COMPUTAC
3 9574 GENE SET ANALYSIS//GENE ONTOLOGY//BMC BIOINFORMATICS
4 15355 BANTING BEST MED//SYNTHETIC DOSAGE LETHALITY//GENETIC INTERACTION
5 24117 EVOLUTIONARY BIOINFORMAT//FOLD SUPERFAMILY//EVOLUTION OF DOMAIN ARCHITECTURE
6 20039 ORTHOLOGY//BIDIRECTIONAL BEST HIT//GENOME FUNCTIONAL PREDICTION
7 20966 DYNAMICAL NETWORK BIOMARKER//EDGE BIOMARKER//ABORAT INNOVAT MATH MODELLING
8 14228 BIMOLECULAR FLUORESCENCE COMPLEMENTATION//SPLIT UBIQUITIN//PROTEIN FRAGMENT COMPLEMENTATION ASSAY
9 6443 PROTEIN PROTEIN DOCKING//CAPRI//PROTEIN DOCKING
10 19900 GENE INDEXED MUTANT//NAA PLANT SOIL NUTR UNIT//ORYZABASE

Go to start page