Class information for:
Level 2: NUCLEAR PORE COMPLEX//PRE MRNA SPLICING//SPLICEOSOME

Basic class information
Class id #P Avg. number of
references		 Database coverage
of references
156 22915 49.9 89%


Bar chart of Publication_year

Last years might be incomplete

Hierarchy of classes
The table includes all classes above and classes immediately below the current class.


Cluster id Level Cluster label #P
0 4 BIOCHEMISTRY & MOLECULAR BIOLOGY//CELL BIOLOGY//ONCOLOGY 4064930
153 3       BIOCHEMISTRY & MOLECULAR BIOLOGY//RIBOSOME//RNA 62593
156 2             NUCLEAR PORE COMPLEX//PRE MRNA SPLICING//SPLICEOSOME 22915
785 1                   SR PROTEINS//ALTERNATIVE SPLICING//POLYPYRIMIDINE TRACT BINDING PROTEIN 3077
884 1                   NUCLEAR PORE COMPLEX//NUCLEOPORIN//NUCLEAR TRANSPORT 2990
3617 1                   HUR//AU RICH ELEMENT//TRISTETRAPROLIN 1945
3668 1                   SPLICEOSOME//PRE MRNA SPLICING//SNRNP 1935
5889 1                   P TEFB//CDK9//RNA POLYMERASE II 1563
6198 1                   P BODIES//STRESS GRANULES//DECAPPING 1515
8466 1                   POLYADENYLATION//ALTERNATIVE POLYADENYLATION//POLYA POLYMERASE 1250
9109 1                   SNAPC//SNRNA GENES//ZNF143 1187
10335 1                   NMD//UPF1//NONSENSE MEDIATED MRNA DECAY 1072
11961 1                   CYTOPLASMIC POLYADENYLATION//CPEB//POLYA BINDING PROTEIN 942
12194 1                   REV//RRE//REV PROTEIN 925
12218 1                   RNA HELICASE//DEAD BOX PROTEIN//DEAD BOX 923
13709 1                   HNRNP B1//HNRNP A2 B1//U1A 818
16463 1                   MRNA EXPORT//NXF1//THO COMPLEX 652
17891 1                   RRP6//MRNP BIOGENESIS METAB//DIS3 577
18528 1                   SAM68//BRK//PTK6 548
20621 1                   HNRNP K//VIGILIN//HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN K 452
28145 1                   INTRON MEDIATED ENHANCEMENT//INTRON//IME 213
28831 1                   MCPIP1//ZC3H12A//MCPIP 198
32852 1                   POLYPYRIMIDINE TRACT BINDING PROTEIN ASSOCIATED SPLICING FACTOR//P54NRB//NONO 133

Terms with highest relevance score


rank Term termType Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 NUCLEAR PORE COMPLEX authKW 301335 2% 64% 355
2 PRE MRNA SPLICING authKW 271240 1% 66% 308
3 SPLICEOSOME authKW 183630 1% 62% 223
4 SR PROTEINS authKW 168819 1% 72% 176
5 NUCLEOPORIN authKW 164307 1% 68% 183
6 MRNA DECAY authKW 159973 1% 63% 190
7 RNA BINDING PROTEIN authKW 148733 2% 26% 437
8 POLYADENYLATION authKW 148081 1% 46% 244
9 ALTERNATIVE SPLICING authKW 142617 3% 15% 712
10 RNA journal 141873 2% 21% 521

Web of Science journal categories


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with term
in class
1 Cell Biology 129597 39% 1% 8887
2 Biochemistry & Molecular Biology 125503 60% 1% 13856
3 Genetics & Heredity 15919 12% 1% 2784
4 Developmental Biology 9125 4% 1% 1000
5 Biophysics 5913 7% 0% 1572
6 Virology 3187 3% 0% 768
7 Biochemical Research Methods 933 3% 0% 715
8 Biotechnology & Applied Microbiology 731 4% 0% 907
9 Oncology 557 5% 0% 1109
10 Biology 310 2% 0% 409

Address terms


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with term
in class
1 MRNP BIOGENESIS METAB 61592 0% 75% 62
2 RNA MOL BIOL 33765 0% 24% 107
3 STRUCT CELL BIOL 19224 0% 27% 54
4 HOWARD HUGHES MED 18285 3% 2% 736
5 BIOANALYT MASS SPE OMETRY GRP 17254 0% 33% 40
6 MOL BIOL RNA 16972 0% 25% 51
7 NUCL SIGNALLING 14758 0% 30% 37
8 PROGRAM BIOMOL 14482 0% 78% 14
9 CELLULAR BIOCHEM 13913 1% 9% 123
10 BIOCHEM 13293 7% 1% 1577

Journals


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with term
in class
1 RNA 141873 2% 21% 521
2 MOLECULAR AND CELLULAR BIOLOGY 102099 6% 6% 1315
3 RNA-A PUBLICATION OF THE RNA SOCIETY 81639 1% 22% 280
4 NUCLEIC ACIDS RESEARCH 68863 6% 4% 1447
5 GENES & DEVELOPMENT 50641 2% 7% 536
6 MOLECULAR CELL 47666 2% 8% 445
7 WILEY INTERDISCIPLINARY REVIEWS-RNA 39822 0% 29% 105
8 EMBO JOURNAL 30075 3% 4% 631
9 NATURE STRUCTURAL & MOLECULAR BIOLOGY 22381 1% 9% 192
10 RNA BIOLOGY 20341 1% 13% 119

Author Key Words


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class		 LCSH search Wikipedia search
1 NUCLEAR PORE COMPLEX 301335 2% 64% 355 Search NUCLEAR+PORE+COMPLEX Search NUCLEAR+PORE+COMPLEX
2 PRE MRNA SPLICING 271240 1% 66% 308 Search PRE+MRNA+SPLICING Search PRE+MRNA+SPLICING
3 SPLICEOSOME 183630 1% 62% 223 Search SPLICEOSOME Search SPLICEOSOME
4 SR PROTEINS 168819 1% 72% 176 Search SR+PROTEINS Search SR+PROTEINS
5 NUCLEOPORIN 164307 1% 68% 183 Search NUCLEOPORIN Search NUCLEOPORIN
6 MRNA DECAY 159973 1% 63% 190 Search MRNA+DECAY Search MRNA+DECAY
7 RNA BINDING PROTEIN 148733 2% 26% 437 Search RNA+BINDING+PROTEIN Search RNA+BINDING+PROTEIN
8 POLYADENYLATION 148081 1% 46% 244 Search POLYADENYLATION Search POLYADENYLATION
9 ALTERNATIVE SPLICING 142617 3% 15% 712 Search ALTERNATIVE+SPLICING Search ALTERNATIVE+SPLICING
10 HUR 140692 1% 65% 162 Search HUR Search HUR

Core articles
The table includes core articles in the class. The following variables is taken into account for the relevance score of an article in a cluster c:
(1) Number of references referring to publications in the class.
(2) Share of total number of active references referring to publications in the class.
(3) Age of the article. New articles get higher score than old articles.
(4) Citation rate, normalized to year.


Rank Reference # ref. in
cl.		 Shr. of ref. in
cl.		 Citations
1 BLACK, DL , (2003) MECHANISMS OF ALTERNATIVE PRE-MESSENGER RNA SPLICING.ANNUAL REVIEW OF BIOCHEMISTRY. VOL. 72. ISSUE . P. 291-336 271 77% 1375
2 GORLICH, D , KUTAY, U , (1999) TRANSPORT BETWEEN THE CELL NUCLEUS AND THE CYTOPLASM.ANNUAL REVIEW OF CELL AND DEVELOPMENTAL BIOLOGY. VOL. 15. ISSUE . P. 607 -660 272 83% 1325
3 ZHAO, J , HYMAN, L , MOORE, C , (1999) FORMATION OF MRNA 3 ' ENDS IN EUKARYOTES: MECHANISM, REGULATION, AND INTERRELATIONSHIPS WITH OTHER STEPS IN MRNA SYNTHESIS.MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS. VOL. 63. ISSUE 2. P. 405 -+ 351 73% 692
4 KRAMER, A , (1996) THE STRUCTURE AND FUNCTION OF PROTEINS INVOLVED IN MAMMALIAN PRE-MRNA SPLICING.ANNUAL REVIEW OF BIOCHEMISTRY. VOL. 65. ISSUE . P. 367-409 279 89% 555
5 LONG, JC , CACERES, JF , (2009) THE SR PROTEIN FAMILY OF SPLICING FACTORS: MASTER REGULATORS OF GENE EXPRESSION.BIOCHEMICAL JOURNAL. VOL. 417. ISSUE . P. 15-27 174 84% 440
6 ISKEN, O , MAQUAT, LE , (2007) QUALITY CONTROL OF EUKARYOTIC MRNA: SAFEGUARDING CELLS FROM ABNORMAL MRNA FUNCTION.GENES & DEVELOPMENT. VOL. 21. ISSUE 15. P. 1833 -1856 209 85% 341
7 NINO, CA , HERISSANT, L , BABOUR, A , DARGEMONT, C , (2013) MRNA NUCLEAR EXPORT IN YEAST.CHEMICAL REVIEWS. VOL. 113. ISSUE 11. P. 8523 -8545 248 86% 24
8 HUG, N , LONGMAN, D , CACERES, JF , (2016) MECHANISM AND REGULATION OF THE NONSENSE-MEDIATED DECAY PATHWAY.NUCLEIC ACIDS RESEARCH. VOL. 44. ISSUE 4. P. 1483 -1495 142 89% 13
9 LE HIR, H , SAULIERE, J , WANG, Z , (2016) THE EXON JUNCTION COMPLEX AS A NODE OF POST-TRANSCRIPTIONAL NETWORKS.NATURE REVIEWS MOLECULAR CELL BIOLOGY. VOL. 17. ISSUE 1. P. - 154 87% 11
10 LEE, Y , RIO, DC , (2015) MECHANISMS AND REGULATION OF ALTERNATIVE PRE-MRNA SPLICING.ANNUAL REVIEW OF BIOCHEMISTRY, VOL 84. VOL. 84. ISSUE . P. 291 -323 176 74% 54

Classes with closest relation at Level 2


Rank Class id link
1 1632 EIF4E//TRANSLATION INITIATION//IRES
2 3425 YB 1//COLD SHOCK PROTEIN//Y BOX BINDING PROTEIN 1
3 2504 TFIID//RNA POLYMERASE II//MEDIATOR COMPLEX
4 1020 NUCLEOLUS//RIBOSOME BIOGENESIS//SNORNA
5 2436 LAMIN//LAMINOPATHY//NUCLEAR ENVELOPE
6 3423 RNA EDITING//ADAR//AEG 1
7 3960 IMP3//DLC1//DELETED IN LIVER CANCER 1
8 3084 CHROMOSOME TERRITORY//NUCLEAR ARCHITECTURE//NUCLEAR ORGANIZATION
9 1185 RIBOZYME//RNASE P//CATALYTIC RNA
10 1227 TRANSPOSABLE ELEMENTS//RETROTRANSPOSON//CHROMOSOMA

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