Class information for:
Level 1: SR PROTEINS//ALTERNATIVE SPLICING//POLYPYRIMIDINE TRACT BINDING PROTEIN

Basic class information
Class id #P Avg. number of
references		 Database coverage
of references
785 3077 52.7 93%


Bar chart of Publication_year

Last years might be incomplete

Hierarchy of classes
The table includes all classes above and classes immediately below the current class.


Cluster id Level Cluster label #P
0 4 BIOCHEMISTRY & MOLECULAR BIOLOGY//CELL BIOLOGY//ONCOLOGY 4064930
153 3       BIOCHEMISTRY & MOLECULAR BIOLOGY//RIBOSOME//RNA 62593
156 2             NUCLEAR PORE COMPLEX//PRE MRNA SPLICING//SPLICEOSOME 22915
785 1                   SR PROTEINS//ALTERNATIVE SPLICING//POLYPYRIMIDINE TRACT BINDING PROTEIN 3077

Terms with highest relevance score


rank Term termType Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 SR PROTEINS authKW 890577 5% 61% 148
2 ALTERNATIVE SPLICING authKW 634338 18% 12% 548
3 POLYPYRIMIDINE TRACT BINDING PROTEIN authKW 200887 1% 56% 36
4 SPLICING FACTOR authKW 180388 1% 43% 42
5 SRPK1 authKW 174945 1% 77% 23
6 RS DOMAIN authKW 164008 1% 72% 23
7 SPLICING ENHANCER authKW 145780 1% 64% 23
8 PRE MRNA SPLICING authKW 143338 3% 18% 82
9 SPLICING REGULATION authKW 101736 1% 49% 21
10 U2AF authKW 99477 1% 53% 19

Web of Science journal categories


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with term
in class
1 Biochemistry & Molecular Biology 15782 59% 0% 1806
2 Cell Biology 10961 31% 0% 962
3 Genetics & Heredity 9021 23% 0% 716
4 Biotechnology & Applied Microbiology 1603 11% 0% 337
5 Mathematical & Computational Biology 1486 4% 0% 133
6 Developmental Biology 1046 4% 0% 125
7 Biochemical Research Methods 561 5% 0% 167
8 Biophysics 357 5% 0% 154
9 Oncology 113 5% 0% 166
10 Evolutionary Biology 55 1% 0% 40

Address terms


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 RNA RNP GRP 79375 0% 100% 8
2 PROGRAM MOL PLANT BIOL 61730 1% 33% 19
3 GENOM PHYSIOL 50222 0% 56% 9
4 EQUIPE BASES MOL PROG S CANC POUMON 2 35432 0% 71% 5
5 PROGRAM MOL CANC BIOL 30378 0% 44% 7
6 MICROBIOL INFECTIOL 26446 1% 10% 27
7 CORE MOL PHARMACOL 22323 0% 75% 3
8 HAVANA GRP 22323 0% 75% 3
9 HUGHES UNDER 22323 0% 75% 3
10 EXONHIT 19844 0% 100% 2

Journals


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 RNA 29504 3% 3% 87
2 RNA-A PUBLICATION OF THE RNA SOCIETY 18649 2% 4% 49
3 NUCLEIC ACIDS RESEARCH 17257 9% 1% 264
4 MOLECULAR AND CELLULAR BIOLOGY 13935 6% 1% 178
5 GENES & DEVELOPMENT 10678 3% 1% 90
6 GENOME BIOLOGY 6661 1% 2% 45
7 MOLECULAR CELL 6239 2% 1% 59
8 BIOTECHFORUM ( BTF ) 4639 1% 1% 35
9 RNA BIOLOGY 4289 1% 2% 20
10 BMC GENOMICS 3885 2% 1% 62

Author Key Words


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class		 LCSH search Wikipedia search
1 SR PROTEINS 890577 5% 61% 148 Search SR+PROTEINS Search SR+PROTEINS
2 ALTERNATIVE SPLICING 634338 18% 12% 548 Search ALTERNATIVE+SPLICING Search ALTERNATIVE+SPLICING
3 POLYPYRIMIDINE TRACT BINDING PROTEIN 200887 1% 56% 36 Search POLYPYRIMIDINE+TRACT+BINDING+PROTEIN Search POLYPYRIMIDINE+TRACT+BINDING+PROTEIN
4 SPLICING FACTOR 180388 1% 43% 42 Search SPLICING+FACTOR Search SPLICING+FACTOR
5 SRPK1 174945 1% 77% 23 Search SRPK1 Search SRPK1
6 RS DOMAIN 164008 1% 72% 23 Search RS+DOMAIN Search RS+DOMAIN
7 SPLICING ENHANCER 145780 1% 64% 23 Search SPLICING+ENHANCER Search SPLICING+ENHANCER
8 PRE MRNA SPLICING 143338 3% 18% 82 Search PRE+MRNA+SPLICING Search PRE+MRNA+SPLICING
9 SPLICING REGULATION 101736 1% 49% 21 Search SPLICING+REGULATION Search SPLICING+REGULATION
10 U2AF 99477 1% 53% 19 Search U2AF Search U2AF

Core articles
The table includes core articles in the class. The following variables is taken into account for the relevance score of an article in a cluster c:
(1) Number of references referring to publications in the class.
(2) Share of total number of active references referring to publications in the class.
(3) Age of the article. New articles get higher score than old articles.
(4) Citation rate, normalized to year.


Rank Reference # ref. in
cl.		 Shr. of ref. in
cl.		 Citations
1 BLACK, DL , (2003) MECHANISMS OF ALTERNATIVE PRE-MESSENGER RNA SPLICING.ANNUAL REVIEW OF BIOCHEMISTRY. VOL. 72. ISSUE . P. 291-336 184 52% 1375
2 LONG, JC , CACERES, JF , (2009) THE SR PROTEIN FAMILY OF SPLICING FACTORS: MASTER REGULATORS OF GENE EXPRESSION.BIOCHEMICAL JOURNAL. VOL. 417. ISSUE . P. 15-27 138 67% 440
3 ZHOU, ZH , FU, XD , (2013) REGULATION OF SPLICING BY SR PROTEINS AND SR PROTEIN-SPECIFIC KINASES.CHROMOSOMA. VOL. 122. ISSUE 3. P. 191 -207 144 75% 67
4 FU, XD , ARES, M , (2014) CONTEXT-DEPENDENT CONTROL OF ALTERNATIVE SPLICING BY RNA-BINDING PROTEINS.NATURE REVIEWS GENETICS. VOL. 15. ISSUE 10. P. 689 -701 121 71% 90
5 MATLIN, AJ , CLARK, F , SMITH, CWJ , (2005) UNDERSTANDING ALTERNATIVE SPLICING: TOWARDS A CELLULAR CODE.NATURE REVIEWS MOLECULAR CELL BIOLOGY. VOL. 6. ISSUE 5. P. 386-398 113 84% 662
6 LIN, SR , FU, XD , (2007) SR PROTEINS AND RELATED FACTORS IN ALTERNATIVE SPLICING.ALTERNATIVE SPLICING IN THE POSTGENOMIC ERA. VOL. 623. ISSUE . P. 107-122 140 85% 102
7 GRAVELEY, BR , (2000) SORTING OUT THE COMPLEXITY OF SR PROTEIN FUNCTIONS.RNA. VOL. 6. ISSUE 9. P. 1197-1211 113 82% 734
8 HOWARD, JM , SANFORD, JR , (2015) THE RNAISSANCE FAMILY: SR PROTEINS AS MULTIFACETED REGULATORS OF GENE EXPRESSION.WILEY INTERDISCIPLINARY REVIEWS-RNA. VOL. 6. ISSUE 1. P. 93 -110 129 71% 12
9 CHEN, M , MANLEY, JL , (2009) MECHANISMS OF ALTERNATIVE SPLICING REGULATION: INSIGHTS FROM MOLECULAR AND GENOMICS APPROACHES.NATURE REVIEWS MOLECULAR CELL BIOLOGY. VOL. 10. ISSUE 11. P. 741 -754 103 64% 437
10 KEPPETIPOLA, N , SHARMA, S , LI, Q , BLACK, DL , (2012) NEURONAL REGULATION OF PRE-MRNA SPLICING BY POLYPYRIMIDINE TRACT BINDING PROTEINS, PTBP1 AND PTBP2.CRITICAL REVIEWS IN BIOCHEMISTRY AND MOLECULAR BIOLOGY. VOL. 47. ISSUE 4. P. 360-378 122 77% 31

Classes with closest relation at Level 1


Rank Class id link
1 3668 SPLICEOSOME//PRE MRNA SPLICING//SNRNP
2 30236 HERBOXIDIENE//SPLICEOSTATIN A//FR901464
3 28145 INTRON MEDIATED ENHANCEMENT//INTRON//IME
4 13709 HNRNP B1//HNRNP A2 B1//U1A
5 32852 POLYPYRIMIDINE TRACT BINDING PROTEIN ASSOCIATED SPLICING FACTOR//P54NRB//NONO
6 10335 NMD//UPF1//NONSENSE MEDIATED MRNA DECAY
7 17904 INTRON GAIN//INTRON LOSS//INTRON EVOLUTION
8 12194 REV//RRE//REV PROTEIN
9 7400 RNA SEQ//TRANSCRIPTOME ASSEMBLY//RNA SEQUENCING
10 18004 INTERACTION PROPENSITY//PROTEIN RNA INTERACTIONS//DNA BINDING RESIDUES

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