Class information for:
Level 1: PROTEIN STRUCTURE PREDICTION//FOLD RECOGNITION//THREADING

Basic class information
Class id #P Avg. number of
references		 Database coverage
of references
1409 2677 43.2 80%


Bar chart of Publication_year

Last years might be incomplete

Hierarchy of classes
The table includes all classes above and classes immediately below the current class.


Cluster id Level Cluster label #P
0 4 BIOCHEMISTRY & MOLECULAR BIOLOGY//CELL BIOLOGY//ONCOLOGY 4064930
219 3       PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS//PROTEIN FOLDING//PROTEIN STRUCTURE PREDICTION 50409
365 2             PROTEIN STRUCTURE PREDICTION//PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS//PSEUDO AMINO ACID COMPOSITION 17331
1409 1                   PROTEIN STRUCTURE PREDICTION//FOLD RECOGNITION//THREADING 2677

Terms with highest relevance score


rank Term termType Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 PROTEIN STRUCTURE PREDICTION authKW 1974727 14% 45% 383
2 FOLD RECOGNITION authKW 869742 5% 58% 131
3 THREADING authKW 763746 4% 56% 120
4 CASP authKW 658891 3% 66% 87
5 PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS journal 545645 21% 9% 552
6 KNOWLEDGE BASED POTENTIALS authKW 370915 2% 59% 55
7 STATISTICAL POTENTIALS authKW 350019 2% 57% 54
8 PROTEIN THREADING authKW 289793 1% 71% 36
9 LOOP MODELING authKW 289083 1% 65% 39
10 STRUCTURE PREDICTION authKW 241114 5% 17% 123

Web of Science journal categories


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with term
in class
1 Biophysics 20645 32% 0% 857
2 Mathematical & Computational Biology 16709 15% 0% 393
3 Biochemistry & Molecular Biology 13419 58% 0% 1555
4 Biochemical Research Methods 7128 18% 0% 476
5 Biotechnology & Applied Microbiology 2050 13% 0% 346
6 Computer Science, Interdisciplinary Applications 1174 6% 0% 167
7 Physics, Atomic, Molecular & Chemical 196 5% 0% 126
8 Chemistry, Multidisciplinary 88 7% 0% 187
9 Chemistry, Physical 71 7% 0% 185
10 Statistics & Probability 61 2% 0% 46

Address terms


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 BAKER CHEM CHEM BIOL 233055 3% 27% 77
2 THEORY BIOPOLYMERS 82761 1% 48% 15
3 PELS FAMILY BIOCHEM STRUCT BIOL 74118 0% 50% 13
4 COMPUTAT PROTEOM BIOPHYS 61578 0% 60% 9
5 PL MOL ENGN 57298 1% 36% 14
6 STUDY SYST BIOL 52405 1% 23% 20
7 SEAVER FDN BIOINFORMAT 52129 0% 57% 8
8 EBGM 51829 0% 45% 10
9 C BOND LIFE SCI 49574 0% 43% 10
10 BIOINFORMAT MOL DESIGN TECHNOL INNOVAT 42981 0% 54% 7

Journals


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS 545645 21% 9% 552
2 FOLDING & DESIGN 31147 1% 12% 22
3 PROTEIN SCIENCE 31069 5% 2% 131
4 BIOINFORMATICS 30051 6% 2% 168
5 PROTEIN ENGINEERING 29040 3% 3% 76
6 BMC STRUCTURAL BIOLOGY 26252 1% 7% 34
7 JOURNAL OF COMPUTATIONAL CHEMISTRY 14310 3% 1% 88
8 BMC BIOINFORMATICS 12731 3% 1% 92
9 PROTEINS-STRUCTURE FUNCTION AND GENETICS 9236 1% 4% 19
10 JOURNAL OF MOLECULAR BIOLOGY 8753 5% 1% 135

Author Key Words


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class		 LCSH search Wikipedia search
1 PROTEIN STRUCTURE PREDICTION 1974727 14% 45% 383 Search PROTEIN+STRUCTURE+PREDICTION Search PROTEIN+STRUCTURE+PREDICTION
2 FOLD RECOGNITION 869742 5% 58% 131 Search FOLD+RECOGNITION Search FOLD+RECOGNITION
3 THREADING 763746 4% 56% 120 Search THREADING Search THREADING
4 CASP 658891 3% 66% 87 Search CASP Search CASP
5 KNOWLEDGE BASED POTENTIALS 370915 2% 59% 55 Search KNOWLEDGE+BASED+POTENTIALS Search KNOWLEDGE+BASED+POTENTIALS
6 STATISTICAL POTENTIALS 350019 2% 57% 54 Search STATISTICAL+POTENTIALS Search STATISTICAL+POTENTIALS
7 PROTEIN THREADING 289793 1% 71% 36 Search PROTEIN+THREADING Search PROTEIN+THREADING
8 LOOP MODELING 289083 1% 65% 39 Search LOOP+MODELING Search LOOP+MODELING
9 STRUCTURE PREDICTION 241114 5% 17% 123 Search STRUCTURE+PREDICTION Search STRUCTURE+PREDICTION
10 LOOP PREDICTION 211896 1% 77% 24 Search LOOP+PREDICTION Search LOOP+PREDICTION

Core articles
The table includes core articles in the class. The following variables is taken into account for the relevance score of an article in a cluster c:
(1) Number of references referring to publications in the class.
(2) Share of total number of active references referring to publications in the class.
(3) Age of the article. New articles get higher score than old articles.
(4) Citation rate, normalized to year.


Rank Reference # ref. in
cl.		 Shr. of ref. in
cl.		 Citations
1 ROY, A , KUCUKURAL, A , ZHANG, Y , (2010) I-TASSER: A UNIFIED PLATFORM FOR AUTOMATED PROTEIN STRUCTURE AND FUNCTION PREDICTION.NATURE PROTOCOLS. VOL. 5. ISSUE 4. P. 725-738 46 74% 1865
2 SALI, A , SHEN, MY , (2006) STATISTICAL POTENTIAL FOR ASSESSMENT AND PREDICTION OF PROTEIN STRUCTURES.PROTEIN SCIENCE. VOL. 15. ISSUE 11. P. 2507 -2524 73 81% 728
3 DORN, M , SILVA, MBE , BURIOL, LS , LAMB, LC , (2014) THREE-DIMENSIONAL PROTEIN STRUCTURE PREDICTION: METHODS AND COMPUTATIONAL STRATEGIES.COMPUTATIONAL BIOLOGY AND CHEMISTRY. VOL. 53. ISSUE . P. 251 -276 173 50% 7
4 BIASINI, M , BIENERT, S , WATERHOUSE, A , ARNOLD, K , STUDER, G , SCHMIDT, T , KIEFER, F , CASSARINO, TG , BERTONI, M , BORDOLI, L , ET AL (2014) SWISS-MODEL: MODELLING PROTEIN TERTIARY AND QUATERNARY STRUCTURE USING EVOLUTIONARY INFORMATION.NUCLEIC ACIDS RESEARCH. VOL. 42. ISSUE W1. P. W252 -W258 24 89% 663
5 BENKERT, P , TOSATTO, SCE , SCHOMBURG, D , (2008) QMEAN: A COMPREHENSIVE SCORING FUNCTION FOR MODEL QUALITY ASSESSMENT.PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS. VOL. 71. ISSUE 1. P. 261 -277 55 83% 279
6 JOSEPH, AP , DE BREVERN, AG , (2014) FROM LOCAL STRUCTURE TO A GLOBAL FRAMEWORK: RECOGNITION OF PROTEIN FOLDS.JOURNAL OF THE ROYAL SOCIETY INTERFACE. VOL. 11. ISSUE 95. P. - 118 52% 1
7 QU, XT , SWANSON, R , DAY, R , TSAI, J , (2009) A GUIDE TO TEMPLATE BASED STRUCTURE PREDICTION.CURRENT PROTEIN & PEPTIDE SCIENCE. VOL. 10. ISSUE 3. P. 270 -285 114 57% 20
8 JAYARAM, B , DHINGRA, P , (2012) TOWARDS CREATING COMPLETE PROTEOMIC STRUCTURAL DATABASES OF WHOLE ORGANISMS.CURRENT BIOINFORMATICS. VOL. 7. ISSUE 4. P. 424-435 94 66% 1
9 MELO, F , SANCHEZ, R , SALI, A , (2002) STATISTICAL POTENTIALS FOR FOLD ASSESSMENT.PROTEIN SCIENCE. VOL. 11. ISSUE 2. P. 430 -448 78 79% 161
10 FLOUDAS, CA , (2007) COMPUTATIONAL METHODS IN PROTEIN STRUCTURE PREDICTION.BIOTECHNOLOGY AND BIOENGINEERING. VOL. 97. ISSUE 2. P. 207-213 67 86% 53

Classes with closest relation at Level 1


Rank Class id link
1 4994 PROTEIN STRUCTURE COMPARISON//PROTEIN STRUCTURE ALIGNMENT//STRUCTURE COMPARISON
2 12405 PROTEIN SECONDARY STRUCTURE PREDICTION//SECONDARY STRUCTURE PREDICTION//SOLVENT ACCESSIBILITY
3 13291 COMPUTATIONAL PROTEIN DESIGN//PROTEIN DESIGN//DEAD END ELIMINATION
4 25281 HP MODEL//AB OFF LATTICE MODEL//PROTEIN FOLDING PROBLEM
5 17055 CORRELATED MUTATIONS//DIRECT COUPLING ANALYSIS//INVERSE ISING PROBLEM
6 16087 CONFORMATIONAL SPACE SEARCH//CONFORMATIONAL SEARCH//NAKA WORKS
7 26332 CYSTEINE BONDING STATE//DISULFIDE CONNECTIVITY PREDICTION//MEDIUM AND LONG RANGE
8 573 PROTEIN FOLDING//PHI VALUE//FOLDING RATE
9 2338 MULTIPLE SEQUENCE ALIGNMENT//SEQUENCE ALIGNMENT//COMPUTER APPLICATIONS IN THE BIOSCIENCES
10 35727 CLOSED LOOPS//GENOME ERS//SKEW PAIRS

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