Class information for:
Level 1: CYSTEINE BONDING STATE//DISULFIDE CONNECTIVITY PREDICTION//MEDIUM AND LONG RANGE

Basic class information
Class id #P Avg. number of
references		 Database coverage
of references
26332 257 31.7 68%


Bar chart of Publication_year

Last years might be incomplete

Hierarchy of classes
The table includes all classes above and classes immediately below the current class.


Cluster id Level Cluster label #P
0 4 BIOCHEMISTRY & MOLECULAR BIOLOGY//CELL BIOLOGY//ONCOLOGY 4064930
219 3       PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS//PROTEIN FOLDING//PROTEIN STRUCTURE PREDICTION 50409
365 2             PROTEIN STRUCTURE PREDICTION//PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS//PSEUDO AMINO ACID COMPOSITION 17331
26332 1                   CYSTEINE BONDING STATE//DISULFIDE CONNECTIVITY PREDICTION//MEDIUM AND LONG RANGE 257

Terms with highest relevance score


rank Term termType Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 CYSTEINE BONDING STATE authKW 356443 1% 100% 3
2 DISULFIDE CONNECTIVITY PREDICTION authKW 356443 1% 100% 3
3 MEDIUM AND LONG RANGE authKW 356443 1% 100% 3
4 BONDING STATE OF CYSTEINES authKW 237629 1% 100% 2
5 CLANTOX authKW 237629 1% 100% 2
6 CSU SOFTWARE authKW 237629 1% 100% 2
7 CYSTEINE REDOX STATE PREDICTION authKW 237629 1% 100% 2
8 DISULFIDE BONDING STATE authKW 237629 1% 100% 2
9 HIDDEN NEURAL NETWORKS authKW 237629 1% 100% 2
10 PAIR PREFERENCES authKW 237629 1% 100% 2

Web of Science journal categories


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 Mathematical & Computational Biology 1997 16% 0% 42
2 Biochemistry & Molecular Biology 1082 54% 0% 138
3 Biophysics 851 21% 0% 55
4 Biochemical Research Methods 601 17% 0% 43
5 Biology 184 8% 0% 21
6 Biotechnology & Applied Microbiology 168 12% 0% 31
7 Polymer Science 112 9% 0% 23
8 Computer Science, Interdisciplinary Applications 37 4% 0% 10
9 Evolutionary Biology 32 3% 0% 7
10 Medical Informatics 18 1% 0% 3

Address terms


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 MACHINE LEARNING NEURAL NETWORKS GRP 152758 1% 43% 3
2 CIRI LIFE SCI HLTH TECHNOL 118814 0% 100% 1
3 EQUIPE STAT SEQUENCES BIOL 118814 0% 100% 1
4 GEN PROTEO 118814 0% 100% 1
5 POLYMER PLASMA 118814 0% 100% 1
6 RIKEN LIFE SCI 118814 0% 100% 1
7 STRUCT BIOL SBRC 118814 0% 100% 1
8 INTERUNIV BIOINFORMAT BRUSSELS 97207 1% 27% 3
9 SUDARSKY COMPUTAT BIOL 35639 1% 10% 3
10 SEAVER FDN BIOINFORMAT 33944 1% 14% 2

Journals


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS 4753 6% 0% 16
2 PROTEIN ENGINEERING 4246 4% 0% 9
3 ACTA POLYMERICA SINICA 4004 4% 0% 11
4 PROTEIN SCIENCE 3188 5% 0% 13
5 BIOINFORMATICS 2839 6% 0% 16
6 INTERNATIONAL JOURNAL OF PEPTIDE AND PROTEIN RESEARCH 2315 3% 0% 7
7 JOURNAL OF BIOSCIENCES 1755 2% 0% 6
8 JOURNAL OF BIOLOGICAL PHYSICS 1435 1% 0% 3
9 INTERNATIONAL JOURNAL OF BIO-MEDICAL COMPUTING 1314 1% 0% 3
10 PREPARATIVE BIOCHEMISTRY & BIOTECHNOLOGY 1303 1% 0% 3

Author Key Words


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class		 LCSH search Wikipedia search
1 CYSTEINE BONDING STATE 356443 1% 100% 3 Search CYSTEINE+BONDING+STATE Search CYSTEINE+BONDING+STATE
2 DISULFIDE CONNECTIVITY PREDICTION 356443 1% 100% 3 Search DISULFIDE+CONNECTIVITY+PREDICTION Search DISULFIDE+CONNECTIVITY+PREDICTION
3 MEDIUM AND LONG RANGE 356443 1% 100% 3 Search MEDIUM+AND+LONG+RANGE Search MEDIUM+AND+LONG+RANGE
4 BONDING STATE OF CYSTEINES 237629 1% 100% 2 Search BONDING+STATE+OF+CYSTEINES Search BONDING+STATE+OF+CYSTEINES
5 CLANTOX 237629 1% 100% 2 Search CLANTOX Search CLANTOX
6 CSU SOFTWARE 237629 1% 100% 2 Search CSU+SOFTWARE Search CSU+SOFTWARE
7 CYSTEINE REDOX STATE PREDICTION 237629 1% 100% 2 Search CYSTEINE+REDOX+STATE+PREDICTION Search CYSTEINE+REDOX+STATE+PREDICTION
8 DISULFIDE BONDING STATE 237629 1% 100% 2 Search DISULFIDE+BONDING+STATE Search DISULFIDE+BONDING+STATE
9 HIDDEN NEURAL NETWORKS 237629 1% 100% 2 Search HIDDEN+NEURAL+NETWORKS Search HIDDEN+NEURAL+NETWORKS
10 PAIR PREFERENCES 237629 1% 100% 2 Search PAIR+PREFERENCES Search PAIR+PREFERENCES

Core articles
The table includes core articles in the class. The following variables is taken into account for the relevance score of an article in a cluster c:
(1) Number of references referring to publications in the class.
(2) Share of total number of active references referring to publications in the class.
(3) Age of the article. New articles get higher score than old articles.
(4) Citation rate, normalized to year.


Rank Reference # ref.
in cl.		 Shr. of ref. in
cl.		 Citations
1 THANGUDU, RR , SHARMA, P , SRINIVASAN, N , OFFMANN, B , (2007) ANALYCYS: A DATABASE FOR CONSERVATION AND CONFORMATION OF DISULPHIDE BONDS IN HOMOLOGOUS PROTEIN DOMAINS.PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS. VOL. 67. ISSUE 2. P. 255 -261 31 72% 7
2 ELUMALAI, P , WU, JW , LIU, HL , (2010) CURRENT ADVANCES IN DISULFIDE CONNECTIVITY PREDICTIONS.JOURNAL OF THE TAIWAN INSTITUTE OF CHEMICAL ENGINEERS. VOL. 41. ISSUE 5. P. 525 -539 32 63% 2
3 MARQUEZ-CHAMORRO, AE , AGUILAR-RUIZ, JS , (2015) SOFT COMPUTING METHODS FOR DISULFIDE CONNECTIVITY PREDICTION.EVOLUTIONARY BIOINFORMATICS. VOL. 11. ISSUE . P. 223 -229 20 80% 0
4 VINCENT, M , PASSERINI, A , LABBE, M , FRASCONI, P , (2008) A SIMPLIFIED APPROACH TO DISULFIDE CONNECTIVITY PREDICTION FROM PROTEIN SEQUENCES.BMC BIOINFORMATICS. VOL. 9. ISSUE . P. - 19 83% 11
5 CERONI, A , PASSERINI, A , VULLO, A , FRASCONI, P , (2006) DISULFIND: A DISULFIDE BONDING STATE AND CYSTEINE CONNECTIVITY PREDICTION SERVER.NUCLEIC ACIDS RESEARCH. VOL. 34. ISSUE . P. W177-W181 14 88% 110
6 RUBINSTEIN, R , FISER, A , (2008) PREDICTING DISULFIDE BOND CONNECTIVITY IN PROTEINS BY CORRELATED MUTATIONS ANALYSIS.BIOINFORMATICS. VOL. 24. ISSUE 4. P. 498 -504 22 58% 23
7 LIN, HH , TSENG, LY , (2010) DBCP: A WEB SERVER FOR DISULFIDE BONDING CONNECTIVITY PATTERN PREDICTION WITHOUT THE PRIOR KNOWLEDGE OF THE BONDING STATE OF CYSTEINES.NUCLEIC ACIDS RESEARCH. VOL. 38. ISSUE . P. W503-W507 14 82% 19
8 SINGH, R , MURAD, W , (2013) PROTEIN DISULFIDE TOPOLOGY DETERMINATION THROUGH THE FUSION OF MASS SPECTROMETRIC ANALYSIS AND SEQUENCE-BASED PREDICTION USING DEMPSTER-SHAFER THEORY.BMC BIOINFORMATICS. VOL. 14. ISSUE . P. - 16 70% 1
9 THANGUDU, RR , MANOHARAN, M , SRINIVASAN, N , CADET, F , SOWDHAMINI, R , OFFMANN, B , (2008) ANALYSIS ON CONSERVATION OF DISULPHIDE BONDS AND THEIR STRUCTURAL FEATURES IN HOMOLOGOUS PROTEIN DOMAIN FAMILIES.BMC STRUCTURAL BIOLOGY. VOL. 8. ISSUE . P. - 33 36% 16
10 LIN, HH , HSU, JC , HSU, YN , PAN, RH , CHEN, YF , TSENG, LY , (2013) DISULFIDE CONNECTIVITY PREDICTION BASED ON STRUCTURAL INFORMATION WITHOUT A PRIOR KNOWLEDGE OF THE BONDING STATE OF CYSTEINES.COMPUTERS IN BIOLOGY AND MEDICINE. VOL. 43. ISSUE 11. P. 1941-1948 17 61% 0

Classes with closest relation at Level 1


Rank Class id link
1 12405 PROTEIN SECONDARY STRUCTURE PREDICTION//SECONDARY STRUCTURE PREDICTION//SOLVENT ACCESSIBILITY
2 15175 STAPHYLOCOCCAL NUCLEASE//THERMODYNAMIC MOLECULAR SWITCH//T4 LYSOZYME
3 16095 BPTI//BAKER CHEM CHEM BIOL//BOVINE PANCREATIC TRYPSIN INHIBITOR
4 37097 COOK HORT FO TRY//DOUBLE STRANDED RNA ANALYSIS//POLYMERIC MAGNESIUM DITHIODIGLYCOLATE
5 1409 PROTEIN STRUCTURE PREDICTION//FOLD RECOGNITION//THREADING
6 26991 DRUG DESIGN BIOTECHNOL//METAL BINDING RESIDUES//METAL CATIONS M2
7 16087 CONFORMATIONAL SPACE SEARCH//CONFORMATIONAL SEARCH//NAKA WORKS
8 17055 CORRELATED MUTATIONS//DIRECT COUPLING ANALYSIS//INVERSE ISING PROBLEM
9 4994 PROTEIN STRUCTURE COMPARISON//PROTEIN STRUCTURE ALIGNMENT//STRUCTURE COMPARISON
10 9511 CATION PI INTERACTION//ANION PI INTERACTIONS//STABILIZATION CENTERS

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