Class information for:
Level 1: CONFORMATIONAL SPACE SEARCH//CONFORMATIONAL SEARCH//NAKA WORKS

Basic class information
Class id #P Avg. number of
references		 Database coverage
of references
16087 674 35.0 54%


Bar chart of Publication_year

Last years might be incomplete

Hierarchy of classes
The table includes all classes above and classes immediately below the current class.


Cluster id Level Cluster label #P
0 4 BIOCHEMISTRY & MOLECULAR BIOLOGY//CELL BIOLOGY//ONCOLOGY 4064930
219 3       PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS//PROTEIN FOLDING//PROTEIN STRUCTURE PREDICTION 50409
260 2             PROTEIN FOLDING//JOURNAL OF CHEMICAL THEORY AND COMPUTATION//JOURNAL OF COMPUTATIONAL CHEMISTRY 19582
16087 1                   CONFORMATIONAL SPACE SEARCH//CONFORMATIONAL SEARCH//NAKA WORKS 674

Terms with highest relevance score


rank Term termType Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 CONFORMATIONAL SPACE SEARCH authKW 163087 1% 60% 6
2 CONFORMATIONAL SEARCH authKW 153457 4% 14% 24
3 NAKA WORKS address 120806 1% 67% 4
4 CONFORMATIONAL AND ELECTRONIC STUDY authKW 90607 0% 100% 2
5 HAS ELU PROT MODELLING GRP address 90607 0% 100% 2
6 MULTIPLE MINIMUM PROBLEM authKW 90607 0% 100% 2
7 CONFORMATIONAL POPULATION authKW 80535 1% 44% 4
8 MULTIPLE MINIMA PROBLEM authKW 70780 1% 31% 5
9 POTENTIAL ENERGY SMOOTHING authKW 60403 0% 67% 2
10 HELIX INTERACTIONS authKW 50963 0% 38% 3

Web of Science journal categories


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 Chemistry, Physical 1069 28% 0% 190
2 Chemistry, Multidisciplinary 1012 27% 0% 180
3 Biophysics 787 13% 0% 89
4 Physics, Atomic, Molecular & Chemical 490 12% 0% 79
5 Biochemistry & Molecular Biology 468 25% 0% 169
6 Computer Science, Interdisciplinary Applications 327 7% 0% 44
7 Crystallography 125 4% 0% 29
8 Mathematics, Interdisciplinary Applications 103 3% 0% 22
9 Mathematical & Computational Biology 73 2% 0% 15
10 Chemistry, Organic 51 6% 0% 38

Address terms


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 NAKA WORKS 120806 1% 67% 4
2 HAS ELU PROT MODELLING GRP 90607 0% 100% 2
3 BEIJING STATE STABLE UNSTABLE SPECIES 45303 0% 100% 1
4 BIOCHEM MOLEC CELL BIOL SECT BIOPHYS PROGRM 45303 0% 100% 1
5 CENT COMPUTAT CHEM 45303 0% 100% 1
6 CHEM QUANTUM CHEM PASTEURA 1 45303 0% 100% 1
7 COMP AIDED DRUG DISCOVERY GRP 45303 0% 100% 1
8 DCX 45303 0% 100% 1
9 FIS MATEMAT NAT 45303 0% 100% 1
10 GPFC 45303 0% 100% 1

Journals


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 JOURNAL OF COMPUTATIONAL CHEMISTRY 42761 11% 1% 76
2 BIOPOLYMERS 10042 6% 1% 38
3 COMPUTERS & CHEMISTRY 9052 2% 1% 14
4 JOURNAL OF PROTEIN CHEMISTRY 5920 2% 1% 14
5 JOURNAL OF MOLECULAR STRUCTURE-THEOCHEM 3791 5% 0% 31
6 PROTEINS-STRUCTURE FUNCTION AND GENETICS 2541 1% 1% 5
7 COMPUTATIONAL POLYMER SCIENCE 2155 0% 5% 1
8 JOURNAL OF COMPUTER-AIDED MOLECULAR DESIGN 2060 1% 1% 9
9 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA-PHYSICAL SCIENCES 1875 1% 1% 4
10 JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS 1731 2% 0% 11

Author Key Words


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class		 LCSH search Wikipedia search
1 CONFORMATIONAL SPACE SEARCH 163087 1% 60% 6 Search CONFORMATIONAL+SPACE+SEARCH Search CONFORMATIONAL+SPACE+SEARCH
2 CONFORMATIONAL SEARCH 153457 4% 14% 24 Search CONFORMATIONAL+SEARCH Search CONFORMATIONAL+SEARCH
3 CONFORMATIONAL AND ELECTRONIC STUDY 90607 0% 100% 2 Search CONFORMATIONAL+AND+ELECTRONIC+STUDY Search CONFORMATIONAL+AND+ELECTRONIC+STUDY
4 MULTIPLE MINIMUM PROBLEM 90607 0% 100% 2 Search MULTIPLE+MINIMUM+PROBLEM Search MULTIPLE+MINIMUM+PROBLEM
5 CONFORMATIONAL POPULATION 80535 1% 44% 4 Search CONFORMATIONAL+POPULATION Search CONFORMATIONAL+POPULATION
6 MULTIPLE MINIMA PROBLEM 70780 1% 31% 5 Search MULTIPLE+MINIMA+PROBLEM Search MULTIPLE+MINIMA+PROBLEM
7 POTENTIAL ENERGY SMOOTHING 60403 0% 67% 2 Search POTENTIAL+ENERGY+SMOOTHING Search POTENTIAL+ENERGY+SMOOTHING
8 HELIX INTERACTIONS 50963 0% 38% 3 Search HELIX+INTERACTIONS Search HELIX+INTERACTIONS
9 1 2 SUBSTITUTED ETHANES 45303 0% 100% 1 Search 1+2+SUBSTITUTED+ETHANES Search 1+2+SUBSTITUTED+ETHANES
10 13 MEMBERED RING 45303 0% 100% 1 Search 13+MEMBERED+RING Search 13+MEMBERED+RING

Core articles
The table includes core articles in the class. The following variables is taken into account for the relevance score of an article in a cluster c:
(1) Number of references referring to publications in the class.
(2) Share of total number of active references referring to publications in the class.
(3) Age of the article. New articles get higher score than old articles.
(4) Citation rate, normalized to year.


Rank Reference # ref. in
cl.		 Shr. of ref. in
cl.		 Citations
1 KOLOSSVARY, I , GUIDA, WC , (1996) LOW MODE SEARCH. AN EFFICIENT, AUTOMATED COMPUTATIONAL METHOD FOR CONFORMATIONAL ANALYSIS: APPLICATION TO CYCLIC AND ACYCLIC ALKANES AND CYCLIC PEPTIDES.JOURNAL OF THE AMERICAN CHEMICAL SOCIETY. VOL. 118. ISSUE 21. P. 5011-5019 32 53% 302
2 MARANAS, CD , FLOUDAS, CA , (1994) A DETERMINISTIC GLOBAL OPTIMIZATION APPROACH FOR MOLECULAR-STRUCTURE DETERMINATION.JOURNAL OF CHEMICAL PHYSICS. VOL. 100. ISSUE 2. P. 1247-1261 42 57% 49
3 PIELA, L , OLSZEWSKI, KA , PILLARDY, J , (1994) ON THE STABILITY OF CONFORMERS.JOURNAL OF MOLECULAR STRUCTURE-THEOCHEM. VOL. 114. ISSUE . P. 229 -239 39 64% 2
4 OZKAN, SB , MEIROVITCH, H , (2003) EFFICIENT CONFORMATIONAL SEARCH METHOD FOR PEPTIDES AND PROTEINS: MONTE CARLO MINIMIZATION WITH AN ADAPTIVE BIAS.JOURNAL OF PHYSICAL CHEMISTRY B. VOL. 107. ISSUE 34. P. 9128-9131 24 73% 5
5 OZKAN, SB , MEIROVITCH, H , (2004) CONFORMATIONAL SEARCH OF PEPTIDES AND PROTEINS: MONTE CARLO MINIMIZATION WITH AN ADAPTIVE BIAS METHOD APPLIED TO THE HEPTAPEPTIDE DELTORPHIN.JOURNAL OF COMPUTATIONAL CHEMISTRY. VOL. 25. ISSUE 4. P. 565-572 27 61% 7
6 VASQUEZ, M , NEMETHY, G , SCHERAGA, HA , (1994) CONFORMATIONAL ENERGY CALCULATIONS ON POLYPEPTIDES AND PROTEINS.CHEMICAL REVIEWS. VOL. 94. ISSUE 8. P. 2183-2239 102 18% 156
7 IZGORODINA, EI , LIN, CY , COOTE, ML , (2007) ENERGY-DIRECTED TREE SEARCH: AN EFFICIENT SYSTEMATIC ALGORITHM FOR FINDING THE LOWEST ENERGY CONFORMATION OF MOLECULES.PHYSICAL CHEMISTRY CHEMICAL PHYSICS. VOL. 9. ISSUE 20. P. 2507-2516 21 60% 10
8 SCHERAGA, HA , PILLARDY, J , LIWO, A , LEE, J , CZAPLEWSKI, C , RIPOLL, DR , WEDEMEYER, WJ , ARNAUTOVA, YA , (2002) EVOLUTION OF PHYSICS-BASED METHODOLOGY FOR EXPLORING THE CONFORMATIONAL ENERGY LANDSCAPE OF PROTEINS.JOURNAL OF COMPUTATIONAL CHEMISTRY. VOL. 23. ISSUE 1. P. 28 -34 39 36% 8
9 KOTEV, MI , GOTO, H , IVANOV, PM , (2005) MOLECULAR MECHANICS (CONFLEX/MM3) SEARCH/MINIMIZATION STUDY OF THE CONFORMATIONS OF ORNOSIDE AND ESCUSIDE.JOURNAL OF MOLECULAR STRUCTURE. VOL. 748. ISSUE 1-3. P. 9 -16 22 58% 2
10 SCHERAGA, HA , (1994) THE MULTIPLE MINIMA PROBLEM IN PROTEIN-FOLDING.POLISH JOURNAL OF CHEMISTRY. VOL. 68. ISSUE 5. P. 889-891 24 75% 2

Classes with closest relation at Level 1


Rank Class id link
1 1409 PROTEIN STRUCTURE PREDICTION//FOLD RECOGNITION//THREADING
2 31639 CYCLOALCANES//MOLECULAR CONFORMATIONAL SPACE//FRE 2411
3 32290 COMMON ENGN ECOL//3D AND 4D QSAR//CHIRAL LIGANDS AND COMPLEXES
4 18895 AB INITIO MO STUDY//DIPEPTIDE WATER COMPLEX//GIOCOMMS
5 34076 UNIVERSAL EXCHANGE LANGUAGE//MEDICAL INFERENCE//BIOINFORMATICS MESSAGING
6 26332 CYSTEINE BONDING STATE//DISULFIDE CONNECTIVITY PREDICTION//MEDIUM AND LONG RANGE
7 8058 GENERALIZED ENSEMBLE ALGORITHM//REPLICA EXCHANGE METHOD//MULTICANONICAL MOLECULAR DYNAMICS
8 7907 DISTANCE GEOMETRY//JOURNAL OF MAGNETIC RESONANCE SERIES B//DGGTATACC2
9 25281 HP MODEL//AB OFF LATTICE MODEL//PROTEIN FOLDING PROBLEM
10 12405 PROTEIN SECONDARY STRUCTURE PREDICTION//SECONDARY STRUCTURE PREDICTION//SOLVENT ACCESSIBILITY

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