Class information for:
Level 1: MULTIPLE SEQUENCE ALIGNMENT//SEQUENCE ALIGNMENT//COMPUTER APPLICATIONS IN THE BIOSCIENCES

Basic class information
Class id #P Avg. number of
references		 Database coverage
of references
2338 2277 28.7 66%


Bar chart of Publication_year

Last years might be incomplete

Hierarchy of classes
The table includes all classes above and classes immediately below the current class.


Cluster id Level Cluster label #P
0 4 BIOCHEMISTRY & MOLECULAR BIOLOGY//CELL BIOLOGY//ONCOLOGY 4064930
90 3       MATHEMATICAL & COMPUTATIONAL BIOLOGY//BIOINFORMATICS//BMC BIOINFORMATICS 77178
126 2             MOLECULAR BIOLOGY AND EVOLUTION//BIOINFORMATICS//MATHEMATICAL & COMPUTATIONAL BIOLOGY 23963
2338 1                   MULTIPLE SEQUENCE ALIGNMENT//SEQUENCE ALIGNMENT//COMPUTER APPLICATIONS IN THE BIOSCIENCES 2277

Terms with highest relevance score


rank Term termType Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 MULTIPLE SEQUENCE ALIGNMENT authKW 589545 5% 36% 123
2 SEQUENCE ALIGNMENT authKW 450590 6% 23% 146
3 COMPUTER APPLICATIONS IN THE BIOSCIENCES journal 377359 7% 18% 160
4 SPACED SEEDS authKW 193748 1% 85% 17
5 LOCAL ALIGNMENT authKW 151600 1% 54% 21
6 STATISTICAL ALIGNMENT authKW 134086 0% 100% 10
7 SMITH WATERMAN authKW 131160 1% 65% 15
8 T COFFEE authKW 121894 0% 91% 10
9 JOURNAL OF COMPUTATIONAL BIOLOGY journal 89407 4% 7% 102
10 HOMOLOGY SEARCH authKW 87963 1% 25% 26

Web of Science journal categories


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 Mathematical & Computational Biology 65124 31% 1% 707
2 Biochemical Research Methods 18479 30% 0% 689
3 Biotechnology & Applied Microbiology 9832 28% 0% 647
4 Computer Science, Interdisciplinary Applications 8458 17% 0% 383
5 Computer Science, Theory & Methods 3361 11% 0% 253
6 Statistics & Probability 2468 8% 0% 193
7 Biochemistry & Molecular Biology 1893 27% 0% 613
8 Evolutionary Biology 1832 6% 0% 143
9 Genetics & Heredity 565 8% 0% 180
10 Computer Science, Artificial Intelligence 564 5% 0% 107

Address terms


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 INTERDISCIPLINARY STUDIES STRUCT FORMAT 47885 0% 71% 5
2 DEP LENGUAJES CIENCIAS COMPUTAC 30168 0% 75% 3
3 BIOL FR 36 26817 0% 100% 2
4 PHYSIOL CELLULAIRE VEGETALE CEA GRENOBLE 26817 0% 100% 2
5 SYMBIOSE TEAM PROJECT 26817 0% 100% 2
6 COMPARAT BIOINFORMAT GRP 26813 0% 50% 4
7 UFR SES 20110 0% 50% 3
8 EDUC TECHNOL COMP 17877 0% 67% 2
9 INFORMAT INTERDISZIPLINA 17877 0% 67% 2
10 BIOTECHNOL INFORMAT 16024 2% 2% 51

Journals


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 COMPUTER APPLICATIONS IN THE BIOSCIENCES 377359 7% 18% 160
2 JOURNAL OF COMPUTATIONAL BIOLOGY 89407 4% 7% 102
3 BIOINFORMATICS 85045 11% 2% 260
4 BMC BIOINFORMATICS 39527 7% 2% 149
5 ALGORITHMS FOR MOLECULAR BIOLOGY 12099 1% 6% 16
6 NUCLEIC ACIDS RESEARCH 10450 8% 0% 177
7 GENE-COMBIS 10052 0% 25% 3
8 IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS 7971 1% 2% 26
9 BULLETIN OF MATHEMATICAL BIOLOGY 6982 2% 1% 36
10 EVOLUTIONARY BIOINFORMATICS 6107 1% 4% 12

Author Key Words


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class		 LCSH search Wikipedia search
1 MULTIPLE SEQUENCE ALIGNMENT 589545 5% 36% 123 Search MULTIPLE+SEQUENCE+ALIGNMENT Search MULTIPLE+SEQUENCE+ALIGNMENT
2 SEQUENCE ALIGNMENT 450590 6% 23% 146 Search SEQUENCE+ALIGNMENT Search SEQUENCE+ALIGNMENT
3 SPACED SEEDS 193748 1% 85% 17 Search SPACED+SEEDS Search SPACED+SEEDS
4 LOCAL ALIGNMENT 151600 1% 54% 21 Search LOCAL+ALIGNMENT Search LOCAL+ALIGNMENT
5 STATISTICAL ALIGNMENT 134086 0% 100% 10 Search STATISTICAL+ALIGNMENT Search STATISTICAL+ALIGNMENT
6 SMITH WATERMAN 131160 1% 65% 15 Search SMITH+WATERMAN Search SMITH+WATERMAN
7 T COFFEE 121894 0% 91% 10 Search T+COFFEE Search T+COFFEE
8 HOMOLOGY SEARCH 87963 1% 25% 26 Search HOMOLOGY+SEARCH Search HOMOLOGY+SEARCH
9 SMITH WATERMAN ALGORITHM 87754 1% 55% 12 Search SMITH+WATERMAN+ALGORITHM Search SMITH+WATERMAN+ALGORITHM
10 MULTIPLE ALIGNMENT 85703 1% 24% 27 Search MULTIPLE+ALIGNMENT Search MULTIPLE+ALIGNMENT

Core articles
The table includes core articles in the class. The following variables is taken into account for the relevance score of an article in a cluster c:
(1) Number of references referring to publications in the class.
(2) Share of total number of active references referring to publications in the class.
(3) Age of the article. New articles get higher score than old articles.
(4) Citation rate, normalized to year.


Rank Reference # ref. in
cl.		 Shr. of ref. in
cl.		 Citations
1 ALTSCHUL, SF , MADDEN, TL , SCHAFFER, AA , ZHANG, JH , ZHANG, Z , MILLER, W , LIPMAN, DJ , (1997) GAPPED BLAST AND PSI-BLAST: A NEW GENERATION OF PROTEIN DATABASE SEARCH PROGRAMS.NUCLEIC ACIDS RESEARCH. VOL. 25. ISSUE 17. P. 3389-3402 37 61% 41839
2 MORRISON, DA , (2006) MULTIPLE SEQUENCE ALIGNMENT FOR PHYLOGENETIC PURPOSES.AUSTRALIAN SYSTEMATIC BOTANY. VOL. 19. ISSUE 6. P. 479 -539 158 49% 73
3 ALTSCHUL, SF , GISH, W , MILLER, W , MYERS, EW , LIPMAN, DJ , (1990) BASIC LOCAL ALIGNMENT SEARCH TOOL.JOURNAL OF MOLECULAR BIOLOGY. VOL. 215. ISSUE 3. P. 403-410 10 83% 45094
4 HERMAN, JL , NOVAK, A , LYNGSO, R , SZABO, A , MIKLOS, I , HEIN, J , (2015) EFFICIENT REPRESENTATION OF UNCERTAINTY IN MULTIPLE SEQUENCE ALIGNMENTS USING DIRECTED ACYCLIC GRAPHS.BMC BIOINFORMATICS. VOL. 16. ISSUE . P. - 67 66% 4
5 SIEVERS, F , WILM, A , DINEEN, D , GIBSON, TJ , KARPLUS, K , LI, WZ , LOPEZ, R , MCWILLIAM, H , REMMERT, M , SODING, J , ET AL (2011) FAST, SCALABLE GENERATION OF HIGH-QUALITY PROTEIN MULTIPLE SEQUENCE ALIGNMENTS USING CLUSTAL OMEGA.MOLECULAR SYSTEMS BIOLOGY. VOL. 7. ISSUE . P. - 17 74% 1990
6 EDGAR, RC , (2004) MUSCLE: MULTIPLE SEQUENCE ALIGNMENT WITH HIGH ACCURACY AND HIGH THROUGHPUT.NUCLEIC ACIDS RESEARCH. VOL. 32. ISSUE 5. P. 1792-1797 17 53% 12512
7 GOTOH, O , (1999) MULTIPLE SEQUENCE ALIGNMENT: ALGORITHMS AND APPLICATIONS.ADVANCES IN BIOPHYSICS, VOL 36, 1999. VOL. 36. ISSUE . P. 159 -206 97 66% 50
8 KATOH, K , MISAWA, K , KUMA, K , MIYATA, T , (2002) MAFFT: A NOVEL METHOD FOR RAPID MULTIPLE SEQUENCE ALIGNMENT BASED ON FAST FOURIER TRANSFORM.NUCLEIC ACIDS RESEARCH. VOL. 30. ISSUE 14. P. 3059 -3066 22 79% 3341
9 EZAWA, K , (2016) CHARACTERIZATION OF MULTIPLE SEQUENCE ALIGNMENT ERRORS USING COMPLETE-LIKELIHOOD SCORE AND POSITION-SHIFT MAP.BMC BIOINFORMATICS. VOL. 17. ISSUE . P. - 51 78% 0
10 KATOH, K , STANDLEY, DM , (2016) A SIMPLE METHOD TO CONTROL OVER-ALIGNMENT IN THE MAFFT MULTIPLE SEQUENCE ALIGNMENT PROGRAM.BIOINFORMATICS. VOL. 32. ISSUE 13. P. 1933 -1942 38 76% 5

Classes with closest relation at Level 1


Rank Class id link
1 9683 EMBL OUTSTN//LECTURE NOTES IN BIOINFORMATICS//PROT INFORMAT OURCE
2 11342 GENE PREDICTION//GENE FINDING//GENE RECOGNITION
3 4994 PROTEIN STRUCTURE COMPARISON//PROTEIN STRUCTURE ALIGNMENT//STRUCTURE COMPARISON
4 36483 GENOMIC DATA VISUALIZATION//ALTERNATE ASSEMBLIES OF COW GENOMES//BAC FISH MAPPING
5 20039 ORTHOLOGY//BIDIRECTIONAL BEST HIT//GENOME FUNCTIONAL PREDICTION
6 1409 PROTEIN STRUCTURE PREDICTION//FOLD RECOGNITION//THREADING
7 21589 COMPUTER APPLICATIONS IN THE BIOSCIENCES//ADAPTIVE WEIGHTED LEAST SQUARES//AMBIGRAM
8 12405 PROTEIN SECONDARY STRUCTURE PREDICTION//SECONDARY STRUCTURE PREDICTION//SOLVENT ACCESSIBILITY
9 19282 CONSERVED NON CODING ELEMENTS//IROQUOIS//ENERGY ENVIRONM BIOL COMP
10 19149 LONGEST COMMON SUBSEQUENCE//TREE EDIT DISTANCE//UNORDERED TREES

Go to start page