Class information for: |
Basic class information |
Class id | #P | Avg. number of references |
Database coverage of references |
---|---|---|---|
4994 | 1691 | 35.5 | 76% |
Hierarchy of classes |
The table includes all classes above and classes immediately below the current class. |
Cluster id | Level | Cluster label | #P |
---|---|---|---|
0 | 4 | BIOCHEMISTRY & MOLECULAR BIOLOGY//CELL BIOLOGY//ONCOLOGY | 4064930 |
219 | 3 | PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS//PROTEIN FOLDING//PROTEIN STRUCTURE PREDICTION | 50409 |
365 | 2 | PROTEIN STRUCTURE PREDICTION//PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS//PSEUDO AMINO ACID COMPOSITION | 17331 |
4994 | 1 | PROTEIN STRUCTURE COMPARISON//PROTEIN STRUCTURE ALIGNMENT//STRUCTURE COMPARISON | 1691 |
Terms with highest relevance score |
rank | Term | termType | Chi square | Shr. of publ. in class containing term |
Class's shr. of term's tot. occurrences |
#P with term in class |
---|---|---|---|---|---|---|
1 | PROTEIN STRUCTURE COMPARISON | authKW | 647020 | 3% | 73% | 49 |
2 | PROTEIN STRUCTURE ALIGNMENT | authKW | 509075 | 2% | 83% | 34 |
3 | STRUCTURE COMPARISON | authKW | 269180 | 3% | 35% | 43 |
4 | STRUCTURE ALIGNMENT | authKW | 235900 | 2% | 47% | 28 |
5 | PROTEIN FOLD | authKW | 222170 | 2% | 31% | 40 |
6 | PROTEIN STRUCTURE CLASSIFICATION | authKW | 177768 | 1% | 62% | 16 |
7 | MULTIPLE STRUCTURE ALIGNMENT | authKW | 138887 | 1% | 77% | 10 |
8 | DOMAIN BOUNDARY PREDICTION | authKW | 110590 | 0% | 88% | 7 |
9 | PROTEIN STRUCTURAL ALIGNMENT | authKW | 92857 | 0% | 86% | 6 |
10 | MULTIPLE STRUCTURAL ALIGNMENT | authKW | 90279 | 0% | 100% | 5 |
Web of Science journal categories |
Rank | Term | Chi square | Shr. of publ. in class containing term |
Class's shr. of term's tot. occurrences |
#P with term in class |
---|---|---|---|---|---|
1 | Mathematical & Computational Biology | 24459 | 22% | 0% | 375 |
2 | Biochemical Research Methods | 12228 | 29% | 0% | 484 |
3 | Biochemistry & Molecular Biology | 8058 | 57% | 0% | 960 |
4 | Biophysics | 4721 | 20% | 0% | 334 |
5 | Biotechnology & Applied Microbiology | 3209 | 19% | 0% | 328 |
6 | Computer Science, Interdisciplinary Applications | 2009 | 10% | 0% | 166 |
7 | Statistics & Probability | 385 | 4% | 0% | 71 |
8 | Crystallography | 305 | 4% | 0% | 72 |
9 | Computer Science, Theory & Methods | 103 | 3% | 0% | 48 |
10 | Biology | 79 | 3% | 0% | 45 |
Address terms |
Rank | Term | Chi square | Shr. of publ. in class containing term |
Class's shr. of term's tot. occurrences |
#P with term in class |
---|---|---|---|---|---|
1 | NACL PESQUISA AGROPECUARIA | 72223 | 0% | 100% | 4 |
2 | BIOMOL STRUCT MODELLING UNIT | 67687 | 1% | 25% | 15 |
3 | BIOMED HLTH INFORMAT PROGRAM | 63188 | 0% | 50% | 7 |
4 | MED BIOL DIGITAL LIB | 57777 | 0% | 80% | 4 |
5 | HUCK GENOM PROTE BIOINFORMAT | 56421 | 0% | 63% | 5 |
6 | PRACT INFORMAT BIOINFORMAT GRP | 50151 | 0% | 56% | 5 |
7 | PL MOL ENGN | 46282 | 1% | 26% | 10 |
8 | SAN DIEGO SUPERCOMP | 37551 | 2% | 6% | 35 |
9 | COMPUTAT CHEM PROT CRYSTALLOG | 36112 | 0% | 100% | 2 |
10 | MOL INFORMAT SYST | 32498 | 0% | 60% | 3 |
Journals |
Rank | Term | Chi square | Shr. of publ. in class containing term |
Class's shr. of term's tot. occurrences |
#P with term in class |
---|---|---|---|---|---|
1 | PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS | 63614 | 9% | 2% | 150 |
2 | BIOINFORMATICS | 42771 | 9% | 2% | 159 |
3 | PROTEIN ENGINEERING | 39064 | 4% | 3% | 70 |
4 | JOURNAL OF COMPUTATIONAL BIOLOGY | 21359 | 3% | 3% | 43 |
5 | PROTEIN SCIENCE | 17880 | 5% | 1% | 79 |
6 | BMC BIOINFORMATICS | 17693 | 5% | 1% | 86 |
7 | BMC STRUCTURAL BIOLOGY | 17401 | 1% | 4% | 22 |
8 | NUCLEIC ACIDS RESEARCH | 9740 | 9% | 0% | 147 |
9 | IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS | 7691 | 1% | 2% | 22 |
10 | CURRENT OPINION IN STRUCTURAL BIOLOGY | 6175 | 2% | 1% | 28 |
Author Key Words |
Core articles |
The table includes core articles in the class. The following variables is taken into account for the relevance score of an article in a cluster c: (1) Number of references referring to publications in the class. (2) Share of total number of active references referring to publications in the class. (3) Age of the article. New articles get higher score than old articles. (4) Citation rate, normalized to year. |
Rank | Reference | # ref. in cl. |
Shr. of ref. in cl. |
Citations |
---|---|---|---|---|
1 | HASEGAWA, H , HOLM, L , (2009) ADVANCES AND PITFALLS OF PROTEIN STRUCTURAL ALIGNMENT.CURRENT OPINION IN STRUCTURAL BIOLOGY. VOL. 19. ISSUE 3. P. 341 -348 | 55 | 87% | 185 |
2 | KRISSINEL, E , HENRICK, K , (2004) SECONDARY-STRUCTURE MATCHING (SSM), A NEW TOOL FOR FAST PROTEIN STRUCTURE ALIGNMENT IN THREE DIMENSIONS.ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY. VOL. 60. ISSUE . P. 2256-2268 | 30 | 73% | 2139 |
3 | TAYLOR, WR , MAY, ACW , BROWN, NP , ASZODI, A , (2001) PROTEIN STRUCTURE: GEOMETRY, TOPOLOGY AND CLASSIFICATION.REPORTS ON PROGRESS IN PHYSICS. VOL. 64. ISSUE 4. P. 517 -590 | 105 | 63% | 32 |
4 | KOLODNY, R , PEREYASLAVETS, L , SAMSON, AO , LEVITT, M , (2013) ON THE UNIVERSE OF PROTEIN FOLDS.ANNUAL REVIEW OF BIOPHYSICS, VOL 42. VOL. 42. ISSUE . P. 559-582 | 74 | 60% | 17 |
5 | CARUGO, O , (2007) RECENT PROGRESS IN MEASURING STRUCTURAL SIMILARITY BETWEEN PROTEINS.CURRENT PROTEIN & PEPTIDE SCIENCE. VOL. 8. ISSUE 3. P. 219 -241 | 84 | 64% | 9 |
6 | TOPHAM, CM , ROUQUIER, M , TARRAT, N , ANDRE, I , (2013) ADAPTIVE SMITH-WATERMAN RESIDUE MATCH SEEDING FOR PROTEIN STRUCTURAL ALIGNMENT.PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS. VOL. 81. ISSUE 10. P. 1823 -1839 | 66 | 69% | 0 |
7 | RITCHIE, DW , GHOORAH, AW , MAVRIDIS, L , VENKATRAMAN, V , (2012) FAST PROTEIN STRUCTURE ALIGNMENT USING GAUSSIAN OVERLAP SCORING OF BACKBONE PEPTIDE FRAGMENT SIMILARITY.BIOINFORMATICS. VOL. 28. ISSUE 24. P. 3274-3281 | 48 | 86% | 3 |
8 | ORENGO, CA , MICHIE, AD , JONES, S , JONES, DT , SWINDELLS, MB , THORNTON, JM , (1997) CATH - A HIERARCHIC CLASSIFICATION OF PROTEIN DOMAIN STRUCTURES.STRUCTURE. VOL. 5. ISSUE 8. P. 1093-1108 | 29 | 85% | 1535 |
9 | RITCHIE, DW , (2016) CALCULATING AND SCORING HIGH QUALITY MULTIPLE FLEXIBLE PROTEIN STRUCTURE ALIGNMENTS.BIOINFORMATICS. VOL. 32. ISSUE 17. P. 2650 -2658 | 41 | 87% | 0 |
10 | DYBAS, JM , FISER, A , (2016) DEVELOPMENT OF A MOTIF-BASED TOPOLOGY-INDEPENDENT STRUCTURE COMPARISON METHOD TO IDENTIFY EVOLUTIONARILY RELATED FOLDS.PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS. VOL. 84. ISSUE 12. P. 1859 -1874 | 52 | 65% | 0 |
Classes with closest relation at Level 1 |