Class information for:
Level 1: PROTEIN STRUCTURE COMPARISON//PROTEIN STRUCTURE ALIGNMENT//STRUCTURE COMPARISON

Basic class information
Class id #P Avg. number of
references		 Database coverage
of references
4994 1691 35.5 76%


Bar chart of Publication_year

Last years might be incomplete

Hierarchy of classes
The table includes all classes above and classes immediately below the current class.


Cluster id Level Cluster label #P
0 4 BIOCHEMISTRY & MOLECULAR BIOLOGY//CELL BIOLOGY//ONCOLOGY 4064930
219 3       PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS//PROTEIN FOLDING//PROTEIN STRUCTURE PREDICTION 50409
365 2             PROTEIN STRUCTURE PREDICTION//PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS//PSEUDO AMINO ACID COMPOSITION 17331
4994 1                   PROTEIN STRUCTURE COMPARISON//PROTEIN STRUCTURE ALIGNMENT//STRUCTURE COMPARISON 1691

Terms with highest relevance score


rank Term termType Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 PROTEIN STRUCTURE COMPARISON authKW 647020 3% 73% 49
2 PROTEIN STRUCTURE ALIGNMENT authKW 509075 2% 83% 34
3 STRUCTURE COMPARISON authKW 269180 3% 35% 43
4 STRUCTURE ALIGNMENT authKW 235900 2% 47% 28
5 PROTEIN FOLD authKW 222170 2% 31% 40
6 PROTEIN STRUCTURE CLASSIFICATION authKW 177768 1% 62% 16
7 MULTIPLE STRUCTURE ALIGNMENT authKW 138887 1% 77% 10
8 DOMAIN BOUNDARY PREDICTION authKW 110590 0% 88% 7
9 PROTEIN STRUCTURAL ALIGNMENT authKW 92857 0% 86% 6
10 MULTIPLE STRUCTURAL ALIGNMENT authKW 90279 0% 100% 5

Web of Science journal categories


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 Mathematical & Computational Biology 24459 22% 0% 375
2 Biochemical Research Methods 12228 29% 0% 484
3 Biochemistry & Molecular Biology 8058 57% 0% 960
4 Biophysics 4721 20% 0% 334
5 Biotechnology & Applied Microbiology 3209 19% 0% 328
6 Computer Science, Interdisciplinary Applications 2009 10% 0% 166
7 Statistics & Probability 385 4% 0% 71
8 Crystallography 305 4% 0% 72
9 Computer Science, Theory & Methods 103 3% 0% 48
10 Biology 79 3% 0% 45

Address terms


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 NACL PESQUISA AGROPECUARIA 72223 0% 100% 4
2 BIOMOL STRUCT MODELLING UNIT 67687 1% 25% 15
3 BIOMED HLTH INFORMAT PROGRAM 63188 0% 50% 7
4 MED BIOL DIGITAL LIB 57777 0% 80% 4
5 HUCK GENOM PROTE BIOINFORMAT 56421 0% 63% 5
6 PRACT INFORMAT BIOINFORMAT GRP 50151 0% 56% 5
7 PL MOL ENGN 46282 1% 26% 10
8 SAN DIEGO SUPERCOMP 37551 2% 6% 35
9 COMPUTAT CHEM PROT CRYSTALLOG 36112 0% 100% 2
10 MOL INFORMAT SYST 32498 0% 60% 3

Journals


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS 63614 9% 2% 150
2 BIOINFORMATICS 42771 9% 2% 159
3 PROTEIN ENGINEERING 39064 4% 3% 70
4 JOURNAL OF COMPUTATIONAL BIOLOGY 21359 3% 3% 43
5 PROTEIN SCIENCE 17880 5% 1% 79
6 BMC BIOINFORMATICS 17693 5% 1% 86
7 BMC STRUCTURAL BIOLOGY 17401 1% 4% 22
8 NUCLEIC ACIDS RESEARCH 9740 9% 0% 147
9 IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS 7691 1% 2% 22
10 CURRENT OPINION IN STRUCTURAL BIOLOGY 6175 2% 1% 28

Author Key Words


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class		 LCSH search Wikipedia search
1 PROTEIN STRUCTURE COMPARISON 647020 3% 73% 49 Search PROTEIN+STRUCTURE+COMPARISON Search PROTEIN+STRUCTURE+COMPARISON
2 PROTEIN STRUCTURE ALIGNMENT 509075 2% 83% 34 Search PROTEIN+STRUCTURE+ALIGNMENT Search PROTEIN+STRUCTURE+ALIGNMENT
3 STRUCTURE COMPARISON 269180 3% 35% 43 Search STRUCTURE+COMPARISON Search STRUCTURE+COMPARISON
4 STRUCTURE ALIGNMENT 235900 2% 47% 28 Search STRUCTURE+ALIGNMENT Search STRUCTURE+ALIGNMENT
5 PROTEIN FOLD 222170 2% 31% 40 Search PROTEIN+FOLD Search PROTEIN+FOLD
6 PROTEIN STRUCTURE CLASSIFICATION 177768 1% 62% 16 Search PROTEIN+STRUCTURE+CLASSIFICATION Search PROTEIN+STRUCTURE+CLASSIFICATION
7 MULTIPLE STRUCTURE ALIGNMENT 138887 1% 77% 10 Search MULTIPLE+STRUCTURE+ALIGNMENT Search MULTIPLE+STRUCTURE+ALIGNMENT
8 DOMAIN BOUNDARY PREDICTION 110590 0% 88% 7 Search DOMAIN+BOUNDARY+PREDICTION Search DOMAIN+BOUNDARY+PREDICTION
9 PROTEIN STRUCTURAL ALIGNMENT 92857 0% 86% 6 Search PROTEIN+STRUCTURAL+ALIGNMENT Search PROTEIN+STRUCTURAL+ALIGNMENT
10 MULTIPLE STRUCTURAL ALIGNMENT 90279 0% 100% 5 Search MULTIPLE+STRUCTURAL+ALIGNMENT Search MULTIPLE+STRUCTURAL+ALIGNMENT

Core articles
The table includes core articles in the class. The following variables is taken into account for the relevance score of an article in a cluster c:
(1) Number of references referring to publications in the class.
(2) Share of total number of active references referring to publications in the class.
(3) Age of the article. New articles get higher score than old articles.
(4) Citation rate, normalized to year.


Rank Reference # ref. in
cl.		 Shr. of ref. in
cl.		 Citations
1 HASEGAWA, H , HOLM, L , (2009) ADVANCES AND PITFALLS OF PROTEIN STRUCTURAL ALIGNMENT.CURRENT OPINION IN STRUCTURAL BIOLOGY. VOL. 19. ISSUE 3. P. 341 -348 55 87% 185
2 KRISSINEL, E , HENRICK, K , (2004) SECONDARY-STRUCTURE MATCHING (SSM), A NEW TOOL FOR FAST PROTEIN STRUCTURE ALIGNMENT IN THREE DIMENSIONS.ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY. VOL. 60. ISSUE . P. 2256-2268 30 73% 2139
3 TAYLOR, WR , MAY, ACW , BROWN, NP , ASZODI, A , (2001) PROTEIN STRUCTURE: GEOMETRY, TOPOLOGY AND CLASSIFICATION.REPORTS ON PROGRESS IN PHYSICS. VOL. 64. ISSUE 4. P. 517 -590 105 63% 32
4 KOLODNY, R , PEREYASLAVETS, L , SAMSON, AO , LEVITT, M , (2013) ON THE UNIVERSE OF PROTEIN FOLDS.ANNUAL REVIEW OF BIOPHYSICS, VOL 42. VOL. 42. ISSUE . P. 559-582 74 60% 17
5 CARUGO, O , (2007) RECENT PROGRESS IN MEASURING STRUCTURAL SIMILARITY BETWEEN PROTEINS.CURRENT PROTEIN & PEPTIDE SCIENCE. VOL. 8. ISSUE 3. P. 219 -241 84 64% 9
6 TOPHAM, CM , ROUQUIER, M , TARRAT, N , ANDRE, I , (2013) ADAPTIVE SMITH-WATERMAN RESIDUE MATCH SEEDING FOR PROTEIN STRUCTURAL ALIGNMENT.PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS. VOL. 81. ISSUE 10. P. 1823 -1839 66 69% 0
7 RITCHIE, DW , GHOORAH, AW , MAVRIDIS, L , VENKATRAMAN, V , (2012) FAST PROTEIN STRUCTURE ALIGNMENT USING GAUSSIAN OVERLAP SCORING OF BACKBONE PEPTIDE FRAGMENT SIMILARITY.BIOINFORMATICS. VOL. 28. ISSUE 24. P. 3274-3281 48 86% 3
8 ORENGO, CA , MICHIE, AD , JONES, S , JONES, DT , SWINDELLS, MB , THORNTON, JM , (1997) CATH - A HIERARCHIC CLASSIFICATION OF PROTEIN DOMAIN STRUCTURES.STRUCTURE. VOL. 5. ISSUE 8. P. 1093-1108 29 85% 1535
9 RITCHIE, DW , (2016) CALCULATING AND SCORING HIGH QUALITY MULTIPLE FLEXIBLE PROTEIN STRUCTURE ALIGNMENTS.BIOINFORMATICS. VOL. 32. ISSUE 17. P. 2650 -2658 41 87% 0
10 DYBAS, JM , FISER, A , (2016) DEVELOPMENT OF A MOTIF-BASED TOPOLOGY-INDEPENDENT STRUCTURE COMPARISON METHOD TO IDENTIFY EVOLUTIONARILY RELATED FOLDS.PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS. VOL. 84. ISSUE 12. P. 1859 -1874 52 65% 0

Classes with closest relation at Level 1


Rank Class id link
1 1409 PROTEIN STRUCTURE PREDICTION//FOLD RECOGNITION//THREADING
2 9196 PROTEIN FUNCTION PREDICTION//COMPLEX SCI SOFTWARE//PHYLOGENETIC MOTIFS
3 35727 CLOSED LOOPS//GENOME ERS//SKEW PAIRS
4 24117 EVOLUTIONARY BIOINFORMAT//FOLD SUPERFAMILY//EVOLUTION OF DOMAIN ARCHITECTURE
5 12405 PROTEIN SECONDARY STRUCTURE PREDICTION//SECONDARY STRUCTURE PREDICTION//SOLVENT ACCESSIBILITY
6 9683 EMBL OUTSTN//LECTURE NOTES IN BIOINFORMATICS//PROT INFORMAT OURCE
7 35524 FUNCTIONAL DATA MODEL//KINGS COMP SCI//AV P HEGER
8 2338 MULTIPLE SEQUENCE ALIGNMENT//SEQUENCE ALIGNMENT//COMPUTER APPLICATIONS IN THE BIOSCIENCES
9 26332 CYSTEINE BONDING STATE//DISULFIDE CONNECTIVITY PREDICTION//MEDIUM AND LONG RANGE
10 6443 PROTEIN PROTEIN DOCKING//CAPRI//PROTEIN DOCKING

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