Class information for:
Level 1: PROTEIN FOLDING//PHI VALUE//FOLDING RATE

Basic class information
Class id #P Avg. number of
references		 Database coverage
of references
573 3290 48.3 85%


Bar chart of Publication_year

Last years might be incomplete

Hierarchy of classes
The table includes all classes above and classes immediately below the current class.


Cluster id Level Cluster label #P
0 4 BIOCHEMISTRY & MOLECULAR BIOLOGY//CELL BIOLOGY//ONCOLOGY 4064930
219 3       PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS//PROTEIN FOLDING//PROTEIN STRUCTURE PREDICTION 50409
260 2             PROTEIN FOLDING//JOURNAL OF CHEMICAL THEORY AND COMPUTATION//JOURNAL OF COMPUTATIONAL CHEMISTRY 19582
573 1                   PROTEIN FOLDING//PHI VALUE//FOLDING RATE 3290

Terms with highest relevance score


rank Term termType Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 PROTEIN FOLDING authKW 782823 21% 12% 703
2 PHI VALUE authKW 460348 2% 79% 63
3 FOLDING RATE authKW 288024 1% 80% 39
4 CONTACT ORDER authKW 270272 1% 79% 37
5 PHI VALUE ANALYSIS authKW 239666 1% 70% 37
6 FOLDING KINETICS authKW 233935 2% 38% 67
7 FOLDING NUCLEUS authKW 233178 1% 74% 34
8 PROTEIN FOLDING KINETICS authKW 174200 1% 57% 33
9 FOLDING PATHWAY authKW 154863 1% 35% 48
10 TRANSITION STATE ENSEMBLE authKW 154859 1% 76% 22

Web of Science journal categories


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with term
in class
1 Biochemistry & Molecular Biology 16149 58% 0% 1893
2 Biophysics 9100 20% 0% 647
3 Physics, Atomic, Molecular & Chemical 2397 12% 0% 386
4 Chemistry, Physical 1447 17% 0% 547
5 Physics, Mathematical 1028 6% 0% 184
6 Physics, Fluids & Plasmas 576 4% 0% 124
7 Mathematical & Computational Biology 520 3% 0% 86
8 Physics, Multidisciplinary 370 7% 0% 217
9 Cell Biology 142 6% 0% 182
10 Biochemical Research Methods 120 3% 0% 99

Address terms


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 BIOINFORMAT TELEMED 91773 1% 34% 29
2 THEORET BIOL PHYS 87758 3% 10% 91
3 PROGRAM BIOCHEM STRUCT BIOL 84779 1% 26% 35
4 MRC PROT ENGN 38653 0% 42% 10
5 BIOMOL STRUCT DESIGN PROGRAM 32969 0% 22% 16
6 PROGRAM BIOPHYS 31766 1% 8% 45
7 CHIM BIOPHYS 31126 1% 12% 27
8 CAMBRIDGE PROT ENGN 30139 0% 25% 13
9 PROT ENGN 28747 2% 5% 66
10 GLOBAL STRATEG ANALYT UNIT 27838 0% 100% 3

Journals


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 FOLDING & DESIGN 71713 1% 21% 37
2 JOURNAL OF MOLECULAR BIOLOGY 71560 13% 2% 424
3 PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS 43352 5% 3% 173
4 PROTEIN SCIENCE 27204 4% 2% 136
5 NATURE STRUCTURAL BIOLOGY 24784 2% 4% 65
6 CURRENT OPINION IN STRUCTURAL BIOLOGY 11804 2% 2% 54
7 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 9906 10% 0% 323
8 BIOCHEMISTRY 9182 7% 0% 233
9 JOURNAL OF CHEMICAL PHYSICS 6364 8% 0% 249
10 BIOPHYSICAL JOURNAL 6242 4% 1% 116

Author Key Words


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class		 LCSH search Wikipedia search
1 PROTEIN FOLDING 782823 21% 12% 703 Search PROTEIN+FOLDING Search PROTEIN+FOLDING
2 PHI VALUE 460348 2% 79% 63 Search PHI+VALUE Search PHI+VALUE
3 FOLDING RATE 288024 1% 80% 39 Search FOLDING+RATE Search FOLDING+RATE
4 CONTACT ORDER 270272 1% 79% 37 Search CONTACT+ORDER Search CONTACT+ORDER
5 PHI VALUE ANALYSIS 239666 1% 70% 37 Search PHI+VALUE+ANALYSIS Search PHI+VALUE+ANALYSIS
6 FOLDING KINETICS 233935 2% 38% 67 Search FOLDING+KINETICS Search FOLDING+KINETICS
7 FOLDING NUCLEUS 233178 1% 74% 34 Search FOLDING+NUCLEUS Search FOLDING+NUCLEUS
8 PROTEIN FOLDING KINETICS 174200 1% 57% 33 Search PROTEIN+FOLDING+KINETICS Search PROTEIN+FOLDING+KINETICS
9 FOLDING PATHWAY 154863 1% 35% 48 Search FOLDING+PATHWAY Search FOLDING+PATHWAY
10 TRANSITION STATE ENSEMBLE 154859 1% 76% 22 Search TRANSITION+STATE+ENSEMBLE Search TRANSITION+STATE+ENSEMBLE

Core articles
The table includes core articles in the class. The following variables is taken into account for the relevance score of an article in a cluster c:
(1) Number of references referring to publications in the class.
(2) Share of total number of active references referring to publications in the class.
(3) Age of the article. New articles get higher score than old articles.
(4) Citation rate, normalized to year.


Rank Reference # ref. in
cl.		 Shr. of ref. in
cl.		 Citations
1 SHAKHNOVICH, E , (2006) PROTEIN FOLDING THERMODYNAMICS AND DYNAMICS: WHERE PHYSICS, CHEMISTRY, AND BIOLOGY MEET.CHEMICAL REVIEWS. VOL. 106. ISSUE 5. P. 1559-1588 176 74% 208
2 SOSNICK, TR , BARRICK, D , (2011) THE FOLDING OF SINGLE DOMAIN PROTEINS - HAVE WE REACHED A CONSENSUS?.CURRENT OPINION IN STRUCTURAL BIOLOGY. VOL. 21. ISSUE 1. P. 12-24 144 75% 70
3 OLIVEBERG, M , WOLYNES, PG , (2005) THE EXPERIMENTAL SURVEY OF PROTEIN-FOLDING ENERGY LANDSCAPES.QUARTERLY REVIEWS OF BIOPHYSICS. VOL. 38. ISSUE 3. P. 245 -288 132 84% 138
4 WEIKL, TR , (2008) LOOP-CLOSURE PRINCIPLES IN PROTEIN FOLDING.ARCHIVES OF BIOCHEMISTRY AND BIOPHYSICS. VOL. 469. ISSUE 1. P. 67-75 126 89% 13
5 MALHOTRA, P , UDGAONKAR, JB , (2016) HOW COOPERATIVE ARE PROTEIN FOLDING AND UNFOLDING TRANSITIONS?.PROTEIN SCIENCE. VOL. 25. ISSUE 11. P. 1924 -1941 131 63% 0
6 PLOTKIN, SS , ONUCHIC, JN , (2002) UNDERSTANDING PROTEIN FOLDING WITH ENERGY LANDSCAPE THEORY - PART I: BASIC CONCEPTS.QUARTERLY REVIEWS OF BIOPHYSICS. VOL. 35. ISSUE 2. P. 111 -167 143 65% 122
7 DILL, KA , OZKAN, SB , SHELL, MS , WEIKL, TR , (2008) THE PROTEIN FOLDING PROBLEM.ANNUAL REVIEW OF BIOPHYSICS. VOL. 37. ISSUE . P. 289 -316 107 48% 392
8 SINHA, KK , UDGAONKAR, JB , (2009) EARLY EVENTS IN PROTEIN FOLDING.CURRENT SCIENCE. VOL. 96. ISSUE 8. P. 1053 -1070 130 64% 9
9 JHA, SK , UDGAONKAR, JB , (2010) FREE ENERGY BARRIERS IN PROTEIN FOLDING AND UNFOLDING REACTIONS.CURRENT SCIENCE. VOL. 99. ISSUE 4. P. 457-475 129 64% 6
10 MIRNY, L , SHAKHNOVICH, E , (2001) PROTEIN FOLDING THEORY: FROM LATTICE TO ALL-ATOM MODELS.ANNUAL REVIEW OF BIOPHYSICS AND BIOMOLECULAR STRUCTURE. VOL. 30. ISSUE . P. 361 -396 97 84% 231

Classes with closest relation at Level 1


Rank Class id link
1 25281 HP MODEL//AB OFF LATTICE MODEL//PROTEIN FOLDING PROBLEM
2 13680 BETA HAIRPIN//TRP CAGE//SIDE CHAIN INTERACTIONS
3 5455 MOLTEN GLOBULE//ALPHA LACTALBUMIN//APOMYOGLOBIN
4 15175 STAPHYLOCOCCAL NUCLEASE//THERMODYNAMIC MOLECULAR SWITCH//T4 LYSOZYME
5 35727 CLOSED LOOPS//GENOME ERS//SKEW PAIRS
6 16095 BPTI//BAKER CHEM CHEM BIOL//BOVINE PANCREATIC TRYPSIN INHIBITOR
7 1409 PROTEIN STRUCTURE PREDICTION//FOLD RECOGNITION//THREADING
8 6749 MARKOV STATE MODEL//ENHANCED SAMPLING//TRANSITION PATH SAMPLING
9 7436 ALPHA HELIX//ALPHA HELIX STABILITY//N CAP
10 8058 GENERALIZED ENSEMBLE ALGORITHM//REPLICA EXCHANGE METHOD//MULTICANONICAL MOLECULAR DYNAMICS

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