Class information for:
Level 1: CLOSED LOOPS//GENOME ERS//SKEW PAIRS

Basic class information
Class id #P Avg. number of
references		 Database coverage
of references
35727 93 27.0 71%


Bar chart of Publication_year

Last years might be incomplete

Hierarchy of classes
The table includes all classes above and classes immediately below the current class.


Cluster id Level Cluster label #P
0 4 BIOCHEMISTRY & MOLECULAR BIOLOGY//CELL BIOLOGY//ONCOLOGY 4064930
219 3       PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS//PROTEIN FOLDING//PROTEIN STRUCTURE PREDICTION 50409
365 2             PROTEIN STRUCTURE PREDICTION//PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS//PSEUDO AMINO ACID COMPOSITION 17331
35727 1                   CLOSED LOOPS//GENOME ERS//SKEW PAIRS 93

Terms with highest relevance score


rank Term termType Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 CLOSED LOOPS authKW 3546060 19% 60% 18
2 GENOME ERS address 1569580 30% 17% 28
3 SKEW PAIRS authKW 1313361 4% 100% 4
4 CONSERVED SEQUENCE STRUCTURE MODULES authKW 985021 3% 100% 3
5 MAJOR FOLDS authKW 985021 3% 100% 3
6 EARLIEST PROTEINS authKW 738764 3% 75% 3
7 ANCIENT BINARY ALPHABET OF PROTEINS authKW 656680 2% 100% 2
8 CLASSIFICATION OF LIFE authKW 656680 2% 100% 2
9 CODE DEGENERACY authKW 656680 2% 100% 2
10 EARLIEST MINI GENES authKW 656680 2% 100% 2

Web of Science journal categories


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 Biophysics 585 29% 0% 27
2 Biochemistry & Molecular Biology 428 56% 0% 52
3 Evolutionary Biology 187 10% 0% 9
4 Mathematical & Computational Biology 146 8% 0% 7
5 Genetics & Heredity 89 14% 0% 13
6 Biochemical Research Methods 66 10% 0% 9
7 Mathematics, Interdisciplinary Applications 66 6% 0% 6
8 Biology 39 6% 0% 6
9 Computer Science, Interdisciplinary Applications 29 5% 0% 5
10 Biotechnology & Applied Microbiology 19 8% 0% 7

Address terms


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 GENOME ERS 1569580 30% 17% 28
2 MATH CHEM GRP 410418 5% 25% 5
3 CNRSUMR 7590CASE 115 328340 1% 100% 1
4 EQUIPE BIOL STRUCT 328340 1% 100% 1
5 EQUIPE SYST MOL BIOL STRUCTURALE 328340 1% 100% 1
6 STUCTURAL BIOL 328340 1% 100% 1
7 UMRC7590 328340 1% 100% 1
8 EVOLUT 318893 37% 3% 34
9 EQUIPE SYST MOL BIOL STRUCT 187620 2% 29% 2
10 CNRS UMRC7590 164169 1% 50% 1

Journals


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS 15096 13% 0% 12
2 FOLDING & DESIGN 7416 2% 1% 2
3 JOURNAL OF MOLECULAR EVOLUTION 3099 6% 0% 6
4 PROTEIN ENGINEERING 2320 4% 0% 4
5 STUDIA UNIVERSITATIS BABES-BOLYAI CHEMIA 1381 2% 0% 2
6 ISRAEL JOURNAL OF ECOLOGY & EVOLUTION 1333 1% 0% 1
7 ORIGINS OF LIFE AND EVOLUTION OF BIOSPHERES 1295 2% 0% 2
8 SEMIGROUP FORUM 1273 3% 0% 3
9 JOURNAL OF MATHEMATICAL CHEMISTRY 1132 3% 0% 3
10 MATCH-COMMUNICATIONS IN MATHEMATICAL AND IN COMPUTER CHEMISTRY 879 2% 0% 2

Author Key Words


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class		 LCSH search Wikipedia search
1 CLOSED LOOPS 3546060 19% 60% 18 Search CLOSED+LOOPS Search CLOSED+LOOPS
2 SKEW PAIRS 1313361 4% 100% 4 Search SKEW+PAIRS Search SKEW+PAIRS
3 CONSERVED SEQUENCE STRUCTURE MODULES 985021 3% 100% 3 Search CONSERVED+SEQUENCE+STRUCTURE+MODULES Search CONSERVED+SEQUENCE+STRUCTURE+MODULES
4 MAJOR FOLDS 985021 3% 100% 3 Search MAJOR+FOLDS Search MAJOR+FOLDS
5 EARLIEST PROTEINS 738764 3% 75% 3 Search EARLIEST+PROTEINS Search EARLIEST+PROTEINS
6 ANCIENT BINARY ALPHABET OF PROTEINS 656680 2% 100% 2 Search ANCIENT+BINARY+ALPHABET+OF+PROTEINS Search ANCIENT+BINARY+ALPHABET+OF+PROTEINS
7 CLASSIFICATION OF LIFE 656680 2% 100% 2 Search CLASSIFICATION+OF+LIFE Search CLASSIFICATION+OF+LIFE
8 CODE DEGENERACY 656680 2% 100% 2 Search CODE+DEGENERACY Search CODE+DEGENERACY
9 EARLIEST MINI GENES 656680 2% 100% 2 Search EARLIEST+MINI+GENES Search EARLIEST+MINI+GENES
10 EARLIEST MRNA 656680 2% 100% 2 Search EARLIEST+MRNA Search EARLIEST+MRNA

Core articles
The table includes core articles in the class. The following variables is taken into account for the relevance score of an article in a cluster c:
(1) Number of references referring to publications in the class.
(2) Share of total number of active references referring to publications in the class.
(3) Age of the article. New articles get higher score than old articles.
(4) Citation rate, normalized to year.


Rank Reference # ref.
in cl.		 Shr. of ref. in
cl.		 Citations
1 SOBOLEVSKY, Y , FRENKEL, ZM , TRIFONOV, EN , (2007) COMBINATIONS OF ANCESTRAL MODULES IN PROTEINS.JOURNAL OF MOLECULAR EVOLUTION. VOL. 65. ISSUE 6. P. 640-650 15 88% 5
2 SOBOLEVSKY, Y , GUIMARAES, RC , TRIFONOV, EN , (2013) TOWARDS FUNCTIONAL REPERTOIRE OF THE EARLIEST PROTEINS.JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS. VOL. 31. ISSUE 11. P. 1293-1300 18 50% 3
3 TRIFONOV, EN , (2006) EARLY MOLECULAR EVOLUTION.ISRAEL JOURNAL OF ECOLOGY & EVOLUTION. VOL. 52. ISSUE 3-4. P. 375-387 16 59% 3
4 AHARONOVSKY, E , TRIFONOV, EN , (2005) SEQUENCE STRUCTURE OF VAN DER WAALS LOCKS IN PROTEINS.JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS. VOL. 22. ISSUE 5. P. 545-553 9 82% 5
5 ROSENFELD, VR , (2007) EMULATING THE FUNCTION OF INTRONS IN PRE-MRNA.MATCH-COMMUNICATIONS IN MATHEMATICAL AND IN COMPUTER CHEMISTRY. VOL. 57. ISSUE 1. P. 135-142 6 100% 0
6 TRIFONOV, EN , (2009) THE ORIGIN OF THE GENETIC CODE AND OF THE EARLIEST OLIGOPEPTIDES.RESEARCH IN MICROBIOLOGY. VOL. 160. ISSUE 7. P. 481-486 13 41% 9
7 BEREZOVSKY, IN , TRIFONOV, EN , (2002) FLOWERING BUDS OF GLOBULAR PROTEINS: TRANSPIRING SIMPLICITY OF PROTEIN ORGANIZATION.COMPARATIVE AND FUNCTIONAL GENOMICS. VOL. 3. ISSUE 6. P. 525-534 10 63% 13
8 FRENKEL, ZM , TRIFONOV, EN , (2007) EVOLUTIONARY NETWORKS IN THE FORMATTED PROTEIN SEQUENCE SPACE.JOURNAL OF COMPUTATIONAL BIOLOGY. VOL. 14. ISSUE 8. P. 1044-1057 8 67% 1
9 BEREZOVSKY, IN , KIRZHNER, VM , KIRZHNER, A , ROSENFELD, VR , TRIFONOV, EN , (2002) CLOSED LOOPS: PERSISTENCE OF THE PROTEIN CHAIN RETURNS.PROTEIN ENGINEERING. VOL. 15. ISSUE 12. P. 955-957 7 88% 5
10 FRENKEL, ZM , TRIFONOV, EN , (2008) FROM PROTEIN SEQUENCE SPACE TO ELEMENTARY PROTEIN MODULES.GENE. VOL. 408. ISSUE 1-2. P. 64 -71 12 41% 5

Classes with closest relation at Level 1


Rank Class id link
1 24117 EVOLUTIONARY BIOINFORMAT//FOLD SUPERFAMILY//EVOLUTION OF DOMAIN ARCHITECTURE
2 4994 PROTEIN STRUCTURE COMPARISON//PROTEIN STRUCTURE ALIGNMENT//STRUCTURE COMPARISON
3 10629 GENETIC CODE//CIRCULAR CODE//EQUIPE BIOINFORMAT THEOR
4 37438 MOLECULAR FORCE INTERACTION//FAST DNA READING//RABINOWICZ EQUATION
5 24190 COMPLEMENTARY PEPTIDE//ANTISENSE PEPTIDE//SEQUENCE FOURIER ANALYSIS
6 26450 VORONOI DIAGRAM//VORONOI DIAGRAM OF SPHERES//QUASI TRIANGULATION
7 11165 LATENT PERIODICITY//TRIPLET PERIODICITY//LONG RANGE CORRELATION
8 573 PROTEIN FOLDING//PHI VALUE//FOLDING RATE
9 17904 INTRON GAIN//INTRON LOSS//INTRON EVOLUTION
10 1409 PROTEIN STRUCTURE PREDICTION//FOLD RECOGNITION//THREADING

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