Class information for:
Level 1: HP MODEL//AB OFF LATTICE MODEL//PROTEIN FOLDING PROBLEM

Basic class information
Class id #P Avg. number of
references		 Database coverage
of references
25281 286 30.4 61%


Bar chart of Publication_year

Last years might be incomplete

Hierarchy of classes
The table includes all classes above and classes immediately below the current class.


Cluster id Level Cluster label #P
0 4 BIOCHEMISTRY & MOLECULAR BIOLOGY//CELL BIOLOGY//ONCOLOGY 4064930
219 3       PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS//PROTEIN FOLDING//PROTEIN STRUCTURE PREDICTION 50409
260 2             PROTEIN FOLDING//JOURNAL OF CHEMICAL THEORY AND COMPUTATION//JOURNAL OF COMPUTATIONAL CHEMISTRY 19582
25281 1                   HP MODEL//AB OFF LATTICE MODEL//PROTEIN FOLDING PROBLEM 286

Terms with highest relevance score


rank Term termType Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 HP MODEL authKW 2467695 12% 66% 35
2 AB OFF LATTICE MODEL authKW 427066 1% 100% 4
3 PROTEIN FOLDING PROBLEM authKW 427058 3% 50% 8
4 HYDROPHOBIC POLAR MODEL authKW 333642 2% 63% 5
5 FUNCTIONAL MODEL PROTEINS authKW 320300 1% 100% 3
6 PULL MOVES authKW 320300 1% 100% 3
7 HYDROPHOBIC POLAR HP MODEL authKW 213533 1% 100% 2
8 MIYAZAWA JERNIGAN ENERGY FUNCTION authKW 213533 1% 100% 2
9 OFF LATTICE AB MODEL authKW 213533 1% 100% 2
10 OFF TRAP STRATEGY authKW 213533 1% 100% 2

Web of Science journal categories


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 Mathematical & Computational Biology 1786 15% 0% 42
2 Computer Science, Interdisciplinary Applications 1404 19% 0% 55
3 Computer Science, Artificial Intelligence 1387 19% 0% 53
4 Computer Science, Theory & Methods 966 16% 0% 47
5 Physics, Mathematical 473 12% 0% 34
6 Biochemical Research Methods 384 13% 0% 37
7 Physics, Fluids & Plasmas 249 8% 0% 22
8 Statistics & Probability 204 7% 0% 20
9 Biotechnology & Applied Microbiology 145 11% 0% 31
10 Physics, Atomic, Molecular & Chemical 115 9% 0% 26

Address terms


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 PHYS ENGN TANDOGAN 213533 1% 100% 2
2 GSIT 160147 1% 50% 3
3 ADM HOOFDGEBOUW 106767 0% 100% 1
4 GROVER ENGN 106767 0% 100% 1
5 GRUNDLAGEN INFORMATIONSVERARBEITUNG 106767 0% 100% 1
6 HUBEI INTELLIGENT INFORMAT PROC REAL TI 106767 0% 100% 1
7 INT INTEGRATED INTELLIGENT SYST 106767 0% 100% 1
8 JOHN VO NEUMANN COMP 106767 0% 100% 1
9 PHYS ENGN BEYTEPE 106767 0% 100% 1
10 SOFT TECH 106767 0% 100% 1

Journals


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 JOURNAL OF COMPUTATIONAL BIOLOGY 19784 6% 1% 17
2 COMPUTATIONAL BIOLOGY AND CHEMISTRY 5965 2% 1% 7
3 BULLETIN OF THE BELGIAN MATHEMATICAL SOCIETY-SIMON STEVIN 3319 2% 1% 6
4 IEEE TRANSACTIONS ON EVOLUTIONARY COMPUTATION 3108 2% 1% 5
5 NATURAL COMPUTING 2656 1% 1% 3
6 CONSTRAINTS 1614 1% 1% 2
7 INTERDISCIPLINARY SCIENCES-COMPUTATIONAL LIFE SCIENCES 1378 1% 1% 2
8 LECTURE NOTES IN COMPUTER SCIENCE 1273 12% 0% 33
9 BMC BIOINFORMATICS 1139 3% 0% 9
10 JOURNAL OF MOLECULAR MODELING 1060 2% 0% 6

Author Key Words


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class		 LCSH search Wikipedia search
1 HP MODEL 2467695 12% 66% 35 Search HP+MODEL Search HP+MODEL
2 AB OFF LATTICE MODEL 427066 1% 100% 4 Search AB+OFF+LATTICE+MODEL Search AB+OFF+LATTICE+MODEL
3 PROTEIN FOLDING PROBLEM 427058 3% 50% 8 Search PROTEIN+FOLDING+PROBLEM Search PROTEIN+FOLDING+PROBLEM
4 HYDROPHOBIC POLAR MODEL 333642 2% 63% 5 Search HYDROPHOBIC+POLAR+MODEL Search HYDROPHOBIC+POLAR+MODEL
5 FUNCTIONAL MODEL PROTEINS 320300 1% 100% 3 Search FUNCTIONAL+MODEL+PROTEINS Search FUNCTIONAL+MODEL+PROTEINS
6 PULL MOVES 320300 1% 100% 3 Search PULL+MOVES Search PULL+MOVES
7 HYDROPHOBIC POLAR HP MODEL 213533 1% 100% 2 Search HYDROPHOBIC+POLAR+HP+MODEL Search HYDROPHOBIC+POLAR+HP+MODEL
8 MIYAZAWA JERNIGAN ENERGY FUNCTION 213533 1% 100% 2 Search MIYAZAWA+JERNIGAN+ENERGY+FUNCTION Search MIYAZAWA+JERNIGAN+ENERGY+FUNCTION
9 OFF LATTICE AB MODEL 213533 1% 100% 2 Search OFF+LATTICE+AB+MODEL Search OFF+LATTICE+AB+MODEL
10 OFF TRAP STRATEGY 213533 1% 100% 2 Search OFF+TRAP+STRATEGY Search OFF+TRAP+STRATEGY

Core articles
The table includes core articles in the class. The following variables is taken into account for the relevance score of an article in a cluster c:
(1) Number of references referring to publications in the class.
(2) Share of total number of active references referring to publications in the class.
(3) Age of the article. New articles get higher score than old articles.
(4) Citation rate, normalized to year.


Rank Reference # ref.
in cl.		 Shr. of ref. in
cl.		 Citations
1 GARZA-FABRE, M , RODRIGUEZ-TELLO, E , TOSCANO-PULIDO, G , (2013) COMPARATIVE ANALYSIS OF DIFFERENT EVALUATION FUNCTIONS FOR PROTEIN STRUCTURE PREDICTION UNDER THE HP MODEL.JOURNAL OF COMPUTER SCIENCE AND TECHNOLOGY. VOL. 28. ISSUE 5. P. 868 -889 20 80% 2
2 WUST, T , LANDAU, DP , (2012) OPTIMIZED WANG-LANDAU SAMPLING OF LATTICE POLYMERS: GROUND STATE SEARCH AND FOLDING THERMODYNAMICS OF HP MODEL PROTEINS.JOURNAL OF CHEMICAL PHYSICS. VOL. 137. ISSUE 6. P. - 30 49% 16
3 TSAY, JJ , SU, SC , (2013) AN EFFECTIVE EVOLUTIONARY ALGORITHM FOR PROTEIN FOLDING ON 3D FCC HP MODEL BY LATTICE ROTATION AND GENERALIZED MOVE SETS.PROTEOME SCIENCE. VOL. 11. ISSUE . P. - 20 77% 0
4 LIU, JF , LI, G , YU, J , (2011) PROTEIN-FOLDING SIMULATIONS OF THE HYDROPHOBIC-HYDROPHILIC MODEL BY COMBINING PULL MOVES WITH ENERGY LANDSCAPE PAVING.PHYSICAL REVIEW E. VOL. 84. ISSUE 3. P. - 20 74% 5
5 LJU, JF , SUN, YY , LI, G , SONG, BB , HUANG, WB , (2013) HEURISTIC-BASED TABU SEARCH ALGORITHM FOR FOLDING TWO-DIMENSIONAL AB OFF-LATTICE MODEL PROTEINS.COMPUTATIONAL BIOLOGY AND CHEMISTRY. VOL. 47. ISSUE . P. 142-148 15 94% 0
6 SHI, GJ , VOGEL, T , WUST, T , LI, YW , LANDAU, DP , (2014) EFFECT OF SINGLE-SITE MUTATIONS ON HYDROPHOBIC-POLAR LATTICE PROTEINS.PHYSICAL REVIEW E. VOL. 90. ISSUE 3. P. - 26 47% 7
7 GARZA-FABRE, M , RODRIGUEZ-TELLO, E , TOSCANO-PULIDO, G , (2015) CONSTRAINT-HANDLING THROUGH MULTI-OBJECTIVE OPTIMIZATION: THE HYDROPHOBIC-POLAR MODEL FOR PROTEIN STRUCTURE PREDICTION.COMPUTERS & OPERATIONS RESEARCH. VOL. 53. ISSUE . P. 128 -153 21 51% 4
8 LU, ZP , HUANG, WQ , SHI, H , (2007) QUASI-PHYSICAL ALGORITHM FOR PROTEIN FOLDING IN AN OFF-LATTICE MODEL.COMMUNICATIONS IN THEORETICAL PHYSICS. VOL. 47. ISSUE 1. P. 181-185 16 84% 1
9 HUANG, WQ , LU, ZP , SHI, H , (2005) GROWTH ALGORITHM FOR FINDING LOW ENERGY CONFIGURATIONS OF SIMPLE LATTICE PROTEINS.PHYSICAL REVIEW E. VOL. 72. ISSUE 1. P. - 18 75% 9
10 SANTOS, J , VILLOT, P , DIEGUEZ, M , (2014) EMERGENT PROTEIN FOLDING MODELED WITH EVOLVED NEURAL CELLULAR AUTOMATA USING THE 3D HP MODEL.JOURNAL OF COMPUTATIONAL BIOLOGY. VOL. 21. ISSUE 11. P. 823 -845 16 67% 2

Classes with closest relation at Level 1


Rank Class id link
1 573 PROTEIN FOLDING//PHI VALUE//FOLDING RATE
2 8058 GENERALIZED ENSEMBLE ALGORITHM//REPLICA EXCHANGE METHOD//MULTICANONICAL MOLECULAR DYNAMICS
3 1409 PROTEIN STRUCTURE PREDICTION//FOLD RECOGNITION//THREADING
4 29029 FORWARDING INDEX//EDGE FORWARDING INDEX//FROBENIUS GRAPH
5 4618 SELF AVOIDING WALK//ARC EXCELLENCE MATH STAT COMPLEX SYST//POLYMER COLLAPSE
6 16087 CONFORMATIONAL SPACE SEARCH//CONFORMATIONAL SEARCH//NAKA WORKS
7 12564 RUNTIME ANALYSIS//EVOLUTIONARY COMPUTATION//ESTIMATION OF DISTRIBUTION ALGORITHMS
8 24205 TRIGGER FACTOR//COTRANSLATIONAL FOLDING//NASCENT CHAIN
9 12116 SIMULATED ANNEALING//EXTREMAL OPTIMIZATION//ADAPTIVE COOLING SCHEDULE
10 26332 CYSTEINE BONDING STATE//DISULFIDE CONNECTIVITY PREDICTION//MEDIUM AND LONG RANGE

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