Class information for:
Level 1: PROTEIN SECONDARY STRUCTURE PREDICTION//SECONDARY STRUCTURE PREDICTION//SOLVENT ACCESSIBILITY

Basic class information
Class id #P Avg. number of
references		 Database coverage
of references
12405 908 37.0 65%


Bar chart of Publication_year

Last years might be incomplete

Hierarchy of classes
The table includes all classes above and classes immediately below the current class.


Cluster id Level Cluster label #P
0 4 BIOCHEMISTRY & MOLECULAR BIOLOGY//CELL BIOLOGY//ONCOLOGY 4064930
219 3       PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS//PROTEIN FOLDING//PROTEIN STRUCTURE PREDICTION 50409
365 2             PROTEIN STRUCTURE PREDICTION//PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS//PSEUDO AMINO ACID COMPOSITION 17331
12405 1                   PROTEIN SECONDARY STRUCTURE PREDICTION//SECONDARY STRUCTURE PREDICTION//SOLVENT ACCESSIBILITY 908

Terms with highest relevance score


rank Term termType Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 PROTEIN SECONDARY STRUCTURE PREDICTION authKW 896714 4% 67% 40
2 SECONDARY STRUCTURE PREDICTION authKW 760830 8% 31% 74
3 SOLVENT ACCESSIBILITY authKW 279616 4% 24% 34
4 COMPOUND PYRAMID MODEL authKW 235394 1% 100% 7
5 PROTEIN STRUCTURE PREDICTION authKW 194412 8% 8% 70
6 CHAMELEON SEQUENCES authKW 134507 1% 67% 6
7 SOLVENT ACCESSIBILITY PREDICTION authKW 120096 1% 71% 5
8 BETA TURN PREDICTION authKW 107607 0% 80% 4
9 RESIDUE DEPTH authKW 107607 0% 80% 4
10 PREDICTION CONTEST authKW 100883 0% 100% 3

Web of Science journal categories


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 Mathematical & Computational Biology 5216 14% 0% 128
2 Biochemistry & Molecular Biology 4008 55% 0% 498
3 Biophysics 3029 21% 0% 195
4 Biochemical Research Methods 2833 19% 0% 174
5 Computer Science, Interdisciplinary Applications 1410 11% 0% 101
6 Biotechnology & Applied Microbiology 514 11% 0% 103
7 Computer Science, Artificial Intelligence 402 6% 0% 55
8 Biology 292 6% 0% 52
9 Computer Science, Theory & Methods 82 3% 0% 30
10 Medical Informatics 68 1% 0% 11

Address terms


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 BIO BIOPHYS CHEM ABT KLINGELBERGSTR 70 44836 0% 67% 2
2 ANALYT BIOSTAT SECT12 S MSC 5626 33628 0% 100% 1
3 BIOHYS MOL BIOL 33628 0% 100% 1
4 BIOL CHIM PROTBIOCH STRUCT FONCT 33628 0% 100% 1
5 BIOMED TECHNOL HUMAN GENET 33628 0% 100% 1
6 BIOTECHNOL GENOMIC SCI PROGRAM 33628 0% 100% 1
7 BIOTECNOL MOLGRP BIOTECNOL AMBIENTAL IND 33628 0% 100% 1
8 CHEM L PASTEURA 1 33628 0% 100% 1
9 CHRISTOPHER S BOND LIFE SCI 271C 33628 0% 100% 1
10 CNRS UMR 5086 BIOINFORMAT RMN STRUCT 33628 0% 100% 1

Journals


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 COMPUTER APPLICATIONS IN THE BIOSCIENCES 50574 4% 4% 37
2 PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS 32858 9% 1% 79
3 PROTEIN ENGINEERING 31437 5% 2% 46
4 PROTEINS-STRUCTURE FUNCTION AND GENETICS 9143 1% 2% 11
5 BIOINFORMATICS 6625 5% 0% 46
6 INTERNATIONAL JOURNAL OF PEPTIDE AND PROTEIN RESEARCH 5890 2% 1% 21
7 PROTEIN SCIENCE 4784 3% 0% 30
8 JOURNAL OF MOLECULAR GRAPHICS 3812 1% 2% 5
9 BMC BIOINFORMATICS 3725 3% 0% 29
10 COMPUTATIONAL BIOLOGY AND CHEMISTRY 2444 1% 1% 8

Author Key Words


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class		 LCSH search Wikipedia search
1 PROTEIN SECONDARY STRUCTURE PREDICTION 896714 4% 67% 40 Search PROTEIN+SECONDARY+STRUCTURE+PREDICTION Search PROTEIN+SECONDARY+STRUCTURE+PREDICTION
2 SECONDARY STRUCTURE PREDICTION 760830 8% 31% 74 Search SECONDARY+STRUCTURE+PREDICTION Search SECONDARY+STRUCTURE+PREDICTION
3 SOLVENT ACCESSIBILITY 279616 4% 24% 34 Search SOLVENT+ACCESSIBILITY Search SOLVENT+ACCESSIBILITY
4 COMPOUND PYRAMID MODEL 235394 1% 100% 7 Search COMPOUND+PYRAMID+MODEL Search COMPOUND+PYRAMID+MODEL
5 PROTEIN STRUCTURE PREDICTION 194412 8% 8% 70 Search PROTEIN+STRUCTURE+PREDICTION Search PROTEIN+STRUCTURE+PREDICTION
6 CHAMELEON SEQUENCES 134507 1% 67% 6 Search CHAMELEON+SEQUENCES Search CHAMELEON+SEQUENCES
7 SOLVENT ACCESSIBILITY PREDICTION 120096 1% 71% 5 Search SOLVENT+ACCESSIBILITY+PREDICTION Search SOLVENT+ACCESSIBILITY+PREDICTION
8 BETA TURN PREDICTION 107607 0% 80% 4 Search BETA+TURN+PREDICTION Search BETA+TURN+PREDICTION
9 RESIDUE DEPTH 107607 0% 80% 4 Search RESIDUE+DEPTH Search RESIDUE+DEPTH
10 PREDICTION CONTEST 100883 0% 100% 3 Search PREDICTION+CONTEST Search PREDICTION+CONTEST

Core articles
The table includes core articles in the class. The following variables is taken into account for the relevance score of an article in a cluster c:
(1) Number of references referring to publications in the class.
(2) Share of total number of active references referring to publications in the class.
(3) Age of the article. New articles get higher score than old articles.
(4) Citation rate, normalized to year.


Rank Reference # ref.
in cl.		 Shr. of ref. in
cl.		 Citations
1 DOR, O , ZHOU, YQ , (2007) ACHIEVING 80% TEN-FOLD CROSS-VALIDATED ACCURACY FOR SECONDARY STRUCTURE PREDICTION BY LARGE-SCALE TRAINING.PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS. VOL. 66. ISSUE 4. P. 838 -845 43 93% 44
2 SIVAN, S , FILO, O , SIEGELMANN, H , (2007) APPLICATION OF EXPERT NETWORKS FOR PREDICTING PROTEINS SECONDARY STRUCTURE.BIOMOLECULAR ENGINEERING. VOL. 24. ISSUE 2. P. 237-243 47 84% 4
3 KURGAN, L , DISFANI, FM , (2011) STRUCTURAL PROTEIN DESCRIPTORS IN 1-DIMENSION AND THEIR SEQUENCE-BASED PREDICTIONS.CURRENT PROTEIN & PEPTIDE SCIENCE. VOL. 12. ISSUE 6. P. 470 -489 65 41% 5
4 ZANGOOEI, MH , JALILI, S , (2012) PROTEIN SECONDARY STRUCTURE PREDICTION USING DWKF BASED ON SVR-NSGAII.NEUROCOMPUTING. VOL. 94. ISSUE . P. 87 -101 34 76% 7
5 ROST, B , SANDER, C , (1993) PREDICTION OF PROTEIN SECONDARY STRUCTURE AT BETTER THAN 70-PERCENT ACCURACY.JOURNAL OF MOLECULAR BIOLOGY. VOL. 232. ISSUE 2. P. 584 -599 28 56% 2325
6 GHANTY, P , PAL, NR , MUDI, RK , (2013) PREDICTION OF PROTEIN SECONDARY STRUCTURE USING PROBABILITY BASED FEATURES AND A HYBRID SYSTEM.JOURNAL OF BIOINFORMATICS AND COMPUTATIONAL BIOLOGY. VOL. 11. ISSUE 5. P. - 32 78% 0
7 ZANGOOEI, MH , JALILI, S , (2012) PSSP WITH DYNAMIC WEIGHTED KERNEL FUSION BASED ON SVM-PHGS.KNOWLEDGE-BASED SYSTEMS. VOL. 27. ISSUE . P. 424 -442 32 74% 4
8 SARASWATHI, S , FERNANDEZ-MARTINEZ, JL , KOLINSKI, A , JERNIGAN, RL , KLOCZKOWSKI, A , (2013) DISTRIBUTIONS OF AMINO ACIDS SUGGEST THAT CERTAIN RESIDUE TYPES MORE EFFECTIVELY DETERMINE PROTEIN SECONDARY STRUCTURE.JOURNAL OF MOLECULAR MODELING. VOL. 19. ISSUE 10. P. 4337 -4348 31 70% 0
9 ROST, B , SANDER, C , (1994) COMBINING EVOLUTIONARY INFORMATION AND NEURAL NETWORKS TO PREDICT PROTEIN SECONDARY STRUCTURE.PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS. VOL. 19. ISSUE 1. P. 55 -72 39 41% 1228
10 CHENG, HT , SEN, TZ , JERNIGAN, RL , KLOCZKOWSKI, A , (2010) DATA MINING FOR PROTEIN SECONDARY STRUCTURE PREDICTION.DATA MINING IN CRYSTALLOGRAPHY. VOL. 134. ISSUE . P. 135 -167 38 58% 0

Classes with closest relation at Level 1


Rank Class id link
1 1409 PROTEIN STRUCTURE PREDICTION//FOLD RECOGNITION//THREADING
2 26332 CYSTEINE BONDING STATE//DISULFIDE CONNECTIVITY PREDICTION//MEDIUM AND LONG RANGE
3 4994 PROTEIN STRUCTURE COMPARISON//PROTEIN STRUCTURE ALIGNMENT//STRUCTURE COMPARISON
4 2741 PSEUDO AMINO ACID COMPOSITION//PROTEIN STRUCTURAL CLASS//JACKKNIFE TEST
5 35524 FUNCTIONAL DATA MODEL//KINGS COMP SCI//AV P HEGER
6 2338 MULTIPLE SEQUENCE ALIGNMENT//SEQUENCE ALIGNMENT//COMPUTER APPLICATIONS IN THE BIOSCIENCES
7 7436 ALPHA HELIX//ALPHA HELIX STABILITY//N CAP
8 4131 TRANSMEMBRANE HELIX//TRANSMEMBRANE HELICES//MEMBRANE PROTEIN
9 17055 CORRELATED MUTATIONS//DIRECT COUPLING ANALYSIS//INVERSE ISING PROBLEM
10 16087 CONFORMATIONAL SPACE SEARCH//CONFORMATIONAL SEARCH//NAKA WORKS

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