Class information for:
Level 1: COPY NUMBER VARIATION//COPY NUMBER VARIANTS//STRUCTURAL VARIATION

Basic class information
Class id #P Avg. number of
references		 Database coverage
of references
5569 1604 44.9 91%


Bar chart of Publication_year

Last years might be incomplete

Hierarchy of classes
The table includes all classes above and classes immediately below the current class.


Cluster id Level Cluster label #P
0 4 BIOCHEMISTRY & MOLECULAR BIOLOGY//CELL BIOLOGY//ONCOLOGY 4064930
90 3       MATHEMATICAL & COMPUTATIONAL BIOLOGY//BIOINFORMATICS//BMC BIOINFORMATICS 77178
1101 2             BIOINFORMATICS//COPY NUMBER VARIATION//NEXT GENERATION SEQUENCING 9808
5569 1                   COPY NUMBER VARIATION//COPY NUMBER VARIANTS//STRUCTURAL VARIATION 1604

Terms with highest relevance score


rank Term termType Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 COPY NUMBER VARIATION authKW 1044027 15% 23% 234
2 COPY NUMBER VARIANTS authKW 244623 4% 21% 62
3 STRUCTURAL VARIATION authKW 225282 3% 29% 41
4 CNV authKW 214723 5% 14% 80
5 PENNCNV authKW 191937 1% 92% 11
6 COPY NUMBER VARIATION CNV authKW 141795 1% 32% 23
7 CNVS authKW 116444 1% 32% 19
8 CCL3L1 authKW 96358 1% 56% 9
9 NBPF authKW 79312 0% 83% 5
10 PARALOGUE RATIO TEST authKW 76141 0% 100% 4

Web of Science journal categories


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 Genetics & Heredity 36727 62% 0% 997
2 Mathematical & Computational Biology 7090 12% 0% 199
3 Biotechnology & Applied Microbiology 6966 28% 0% 457
4 Biochemical Research Methods 2352 13% 0% 216
5 Biochemistry & Molecular Biology 676 21% 0% 333
6 Psychiatry 238 5% 0% 88
7 Agriculture, Dairy & Animal Science 61 2% 0% 31
8 Evolutionary Biology 48 2% 0% 25
9 Cell Biology 24 4% 0% 68
10 Statistics & Probability 24 1% 0% 24

Address terms


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 CELLULAR MOL MOL MED 57106 0% 100% 3
2 GRP MOL GENET SYST BIOL 57106 0% 100% 3
3 QUANTITAT GENOM MED 50758 0% 67% 4
4 PL GENOM 50477 3% 5% 50
5 GENOME SCI 44570 7% 2% 110
6 SHANDONG PROV ANIM DIS CONTROL BREEDING 40302 0% 35% 6
7 BIOINFORMAT BIOFOTON 38071 0% 100% 2
8 EPIDEMIOL PUBL HLTH MD3 38071 0% 100% 2
9 GEL BOVINE FUNCT GENOM 38071 0% 100% 2
10 SECCIO GENET CLIN 38071 0% 100% 2

Journals


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 BMC GENOMICS 22686 7% 1% 107
2 GENOME RESEARCH 18894 2% 3% 37
3 BIOINFORMATICS 14698 6% 1% 91
4 NATURE GENETICS 11998 3% 1% 56
5 BIOTECHFORUM ( BTF ) 11137 2% 2% 39
6 BMC BIOINFORMATICS 6522 3% 1% 51
7 CYTOGENETIC AND GENOME RESEARCH 6353 2% 1% 27
8 HUMAN MUTATION 5494 2% 1% 34
9 AMERICAN JOURNAL OF HUMAN GENETICS 5169 3% 1% 47
10 GENOME BIOLOGY 4958 2% 1% 28

Author Key Words


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class		 LCSH search Wikipedia search
1 COPY NUMBER VARIATION 1044027 15% 23% 234 Search COPY+NUMBER+VARIATION Search COPY+NUMBER+VARIATION
2 COPY NUMBER VARIANTS 244623 4% 21% 62 Search COPY+NUMBER+VARIANTS Search COPY+NUMBER+VARIANTS
3 STRUCTURAL VARIATION 225282 3% 29% 41 Search STRUCTURAL+VARIATION Search STRUCTURAL+VARIATION
4 CNV 214723 5% 14% 80 Search CNV Search CNV
5 PENNCNV 191937 1% 92% 11 Search PENNCNV Search PENNCNV
6 COPY NUMBER VARIATION CNV 141795 1% 32% 23 Search COPY+NUMBER+VARIATION+CNV Search COPY+NUMBER+VARIATION+CNV
7 CNVS 116444 1% 32% 19 Search CNVS Search CNVS
8 CCL3L1 96358 1% 56% 9 Search CCL3L1 Search CCL3L1
9 NBPF 79312 0% 83% 5 Search NBPF Search NBPF
10 PARALOGUE RATIO TEST 76141 0% 100% 4 Search PARALOGUE+RATIO+TEST Search PARALOGUE+RATIO+TEST

Core articles
The table includes core articles in the class. The following variables is taken into account for the relevance score of an article in a cluster c:
(1) Number of references referring to publications in the class.
(2) Share of total number of active references referring to publications in the class.
(3) Age of the article. New articles get higher score than old articles.
(4) Citation rate, normalized to year.


Rank Reference # ref.
in cl.		 Shr. of ref. in
cl.		 Citations
1 ZANDI, PP , PIROOZNIA, M , GOES, FS , (2015) WHOLE-GENOME CNV ANALYSIS: ADVANCES IN COMPUTATIONAL APPROACHES.FRONTIERS IN GENETICS. VOL. 6. ISSUE . P. - 60 88% 8
2 ESCARAMIS, G , DOCAMPO, E , RABIONET, R , (2015) A DECADE OF STRUCTURAL VARIANTS: DESCRIPTION, HISTORY AND METHODS TO DETECT STRUCTURAL VARIATION.BRIEFINGS IN FUNCTIONAL GENOMICS. VOL. 14. ISSUE 5. P. 305 -314 81 68% 4
3 ALKAN, C , COE, BP , EICHLER, EE , (2011) APPLICATIONS OF NEXT-GENERATION SEQUENCING GENOME STRUCTURAL VARIATION DISCOVERY AND GENOTYPING.NATURE REVIEWS GENETICS. VOL. 12. ISSUE 5. P. 363 -375 57 54% 371
4 MILLS, RE , WALTER, K , STEWART, C , HANDSAKER, RE , CHEN, K , ALKAN, C , ABYZOV, A , YOON, SC , YE, K , CHEETHAM, RK , ET AL (2011) MAPPING COPY NUMBER VARIATION BY POPULATION-SCALE GENOME SEQUENCING.NATURE. VOL. 470. ISSUE 7332. P. 59-65 33 80% 392
5 LIU, GE , BICKHART, DM , (2012) COPY NUMBER VARIATION IN THE CATTLE GENOME.FUNCTIONAL & INTEGRATIVE GENOMICS. VOL. 12. ISSUE 4. P. 609 -624 84 57% 17
6 ZHAO, M , WANG, QG , WANG, Q , JIA, PL , ZHAO, ZM , (2013) COMPUTATIONAL TOOLS FOR COPY NUMBER VARIATION (CNV) DETECTION USING NEXT-GENERATION SEQUENCING DATA: FEATURES AND PERSPECTIVES.BMC BIOINFORMATICS. VOL. 14. ISSUE . P. - 52 71% 55
7 ZARREI, M , MACDONALD, JR , MERICO, D , SCHERER, SW , (2015) A COPY NUMBER VARIATION MAP OF THE HUMAN GENOME.NATURE REVIEWS GENETICS. VOL. 16. ISSUE 3. P. 172 -183 47 52% 64
8 GIRIRAJAN, S , CAMPBELL, CD , EICHLER, EE , (2011) HUMAN COPY NUMBER VARIATION AND COMPLEX GENETIC DISEASE.ANNUAL REVIEW OF GENETICS, VOL 45. VOL. 45. ISSUE . P. 203 -226 66 51% 110
9 CARVALHO, CMB , LUPSKI, JR , (2016) MECHANISMS UNDERLYING STRUCTURAL VARIANT FORMATION IN GENOMIC DISORDERS.NATURE REVIEWS GENETICS. VOL. 17. ISSUE 4. P. 224 -238 59 38% 12
10 JENKINS, GM , GODDARD, ME , BLACK, MA , BRAUNING, R , AUVRAY, B , DODDS, KG , KIJAS, JW , COCKETT, N , MCEWAN, JC , (2016) COPY NUMBER VARIANTS IN THE SHEEP GENOME DETECTED USING MULTIPLE APPROACHES.BMC GENOMICS. VOL. 17. ISSUE . P. - 50 76% 0

Classes with closest relation at Level 1


Rank Class id link
1 12230 DNA COPY NUMBER//HLTH SOLUT GRP//ARRAY CGH
2 6924 SUBTELOMERIC REARRANGEMENTS//ARRAY CGH//MBD5
3 20601 COMPLEX CHROMOSOMAL REARRANGEMENT//COMPLEX CHROMOSOME REARRANGEMENT//CHROMOTHRIPSIS
4 14724 ZNF804A//CACNA1C//ANK3
5 24588 SMITH MAGENIS SYNDROME//RAI1//POTOCKI LUPSKI SYNDROME
6 2013 GENOME ASSEMBLY//BIOINFORMATICS//VARIANT CALLING
7 5364 AUTISM//BROAD AUTISM PHENOTYPE//MOLECULAR AUTISM
8 36483 GENOMIC DATA VISUALIZATION//ALTERNATE ASSEMBLIES OF COW GENOMES//BAC FISH MAPPING
9 3965 EVOLUT CANC//CANCER GENOME//CANCER GENOMICS
10 3009 RARE VARIANTS//GENETIC EPIDEMIOLOGY//BURDEN TEST

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