Class information for:
Level 1: TRANS SPLICING//SPLICED LEADER//CHIMERIC RNA

Basic class information
Class id #P Avg. number of
references		 Database coverage
of references
19243 515 38.8 90%


Bar chart of Publication_year

Last years might be incomplete

Hierarchy of classes
The table includes all classes above and classes immediately below the current class.


Cluster id Level Cluster label #P
0 4 BIOCHEMISTRY & MOLECULAR BIOLOGY//CELL BIOLOGY//ONCOLOGY 4064930
90 3       MATHEMATICAL & COMPUTATIONAL BIOLOGY//BIOINFORMATICS//BMC BIOINFORMATICS 77178
1101 2             BIOINFORMATICS//COPY NUMBER VARIATION//NEXT GENERATION SEQUENCING 9808
19243 1                   TRANS SPLICING//SPLICED LEADER//CHIMERIC RNA 515

Terms with highest relevance score


rank Term termType Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 TRANS SPLICING authKW 1067341 14% 25% 71
2 SPLICED LEADER authKW 809481 6% 43% 32
3 CHIMERIC RNA authKW 282327 2% 48% 10
4 RNA TRANS SPLICING authKW 135519 1% 57% 4
5 PROGRAM MOL THER Y GENODERMATOSES address 133403 1% 75% 3
6 SPLICE LEADER authKW 133403 1% 75% 3
7 BIOLOSITICS authKW 118582 0% 100% 2
8 CANCER SPECIFIC FUSION GENES authKW 118582 0% 100% 2
9 CONJOINED GENES authKW 118582 0% 100% 2
10 HETEROLOGOUS TRANS SPLICING authKW 118582 0% 100% 2

Web of Science journal categories


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 Genetics & Heredity 2941 32% 0% 164
2 Biochemistry & Molecular Biology 1889 50% 0% 260
3 Biotechnology & Applied Microbiology 1303 22% 0% 114
4 Parasitiology 750 8% 0% 39
5 Cell Biology 654 20% 0% 101
6 Mathematical & Computational Biology 653 7% 0% 35
7 Oncology 248 13% 0% 68
8 Biochemical Research Methods 208 8% 0% 39
9 Medicine, Research & Experimental 95 6% 0% 32
10 Developmental Biology 31 2% 0% 10

Address terms


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 PROGRAM MOL THER Y GENODERMATOSES 133403 1% 75% 3
2 MOL DERMATOL EB HOUSE AUSTRIA 106721 1% 60% 3
3 AGR INFORMAT SUB 59291 0% 100% 1
4 AGR LIGE SCI 59291 0% 100% 1
5 ANIM SCI S 59291 0% 100% 1
6 ATLAS POITIERS EDITORIAL GRP 59291 0% 100% 1
7 BIOCHEM BIOPHYS SCI 3201 CULLEN BLVD 59291 0% 100% 1
8 BIOL DEV UMR 7138 59291 0% 100% 1
9 BIOL MC 4616 59291 0% 100% 1
10 CIHR MSFHR BIOINFORMAT TRAINING PROGRAM 59291 0% 100% 1

Journals


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 MOLECULAR AND BIOCHEMICAL PARASITOLOGY 6496 5% 0% 25
2 RNA-A PUBLICATION OF THE RNA SOCIETY 5623 2% 1% 11
3 GENOME RESEARCH 3477 2% 1% 9
4 BIOTECHFORUM ( BTF ) 3283 2% 0% 12
5 NUCLEIC ACIDS RESEARCH 2481 8% 0% 41
6 BIOINFORMATICS 2199 4% 0% 20
7 WILEY INTERDISCIPLINARY REVIEWS-RNA 1448 1% 1% 3
8 BMC GENOMICS 1193 3% 0% 14
9 RNA 1134 1% 0% 7
10 MOLECULAR THERAPY 1057 2% 0% 8

Author Key Words


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class		 LCSH search Wikipedia search
1 TRANS SPLICING 1067341 14% 25% 71 Search TRANS+SPLICING Search TRANS+SPLICING
2 SPLICED LEADER 809481 6% 43% 32 Search SPLICED+LEADER Search SPLICED+LEADER
3 CHIMERIC RNA 282327 2% 48% 10 Search CHIMERIC+RNA Search CHIMERIC+RNA
4 RNA TRANS SPLICING 135519 1% 57% 4 Search RNA+TRANS+SPLICING Search RNA+TRANS+SPLICING
5 SPLICE LEADER 133403 1% 75% 3 Search SPLICE+LEADER Search SPLICE+LEADER
6 BIOLOSITICS 118582 0% 100% 2 Search BIOLOSITICS Search BIOLOSITICS
7 CANCER SPECIFIC FUSION GENES 118582 0% 100% 2 Search CANCER+SPECIFIC+FUSION+GENES Search CANCER+SPECIFIC+FUSION+GENES
8 CONJOINED GENES 118582 0% 100% 2 Search CONJOINED+GENES Search CONJOINED+GENES
9 HETEROLOGOUS TRANS SPLICING 118582 0% 100% 2 Search HETEROLOGOUS+TRANS+SPLICING Search HETEROLOGOUS+TRANS+SPLICING
10 SPLICED LEADER SEQUENCE RNA 118582 0% 100% 2 Search SPLICED+LEADER+SEQUENCE+RNA Search SPLICED+LEADER+SEQUENCE+RNA

Core articles
The table includes core articles in the class. The following variables is taken into account for the relevance score of an article in a cluster c:
(1) Number of references referring to publications in the class.
(2) Share of total number of active references referring to publications in the class.
(3) Age of the article. New articles get higher score than old articles.
(4) Citation rate, normalized to year.


Rank Reference # ref.
in cl.		 Shr. of ref. in
cl.		 Citations
1 LASDA, EL , BLUMENTHAL, T , (2011) TRANS-SPLICING.WILEY INTERDISCIPLINARY REVIEWS-RNA. VOL. 2. ISSUE 3. P. 417-434 79 58% 36
2 LATYSHEVA, NS , BABU, MM , (2016) DISCOVERING AND UNDERSTANDING ONCOGENIC GENE FUSIONS THROUGH DATA INTENSIVE COMPUTATIONAL APPROACHES.NUCLEIC ACIDS RESEARCH. VOL. 44. ISSUE 10. P. 4487 -4503 81 47% 2
3 LEI, Q , LI, C , ZUO, ZX , HUANG, CH , CHENG, HH , ZHOU, RJ , (2016) EVOLUTIONARY INSIGHTS INTO RNA TRANS-SPLICING IN VERTEBRATES.GENOME BIOLOGY AND EVOLUTION. VOL. 8. ISSUE 3. P. 562 -577 68 52% 0
4 KUMAR, S , RAZZAQ, SK , VO, AD , GAUTAM, M , LI, H , (2016) IDENTIFYING FUSION TRANSCRIPTS USING NEXT GENERATION SEQUENCING.WILEY INTERDISCIPLINARY REVIEWS-RNA. VOL. 7. ISSUE 6. P. 811 -823 47 67% 0
5 RODRIGUEZ-MARTIN, B , PALUMBO, E , MARCO-SOLA, S , GRIEBEL, T , RIBECA, P , ALONSO, G , RASTROJO, A , AGUADO, B , GUIGO, R , DJEBALI, S , (2017) CHIMPIPE: ACCURATE DETECTION OF FUSION GENES AND TRANSCRIPTION-INDUCED CHIMERAS FROM RNA-SEQ DATA.BMC GENOMICS. VOL. 18. ISSUE . P. - 38 69% 0
6 YU, CY , LIU, HJ , HUNG, LY , KUO, HC , CHUANG, TJ , (2014) IS AN OBSERVED NON-CO-LINEAR RNA PRODUCT SPLICED IN TRANS, IN CIS OR JUST IN VITRO?.NUCLEIC ACIDS RESEARCH. VOL. 42. ISSUE 14. P. 9410 -9423 37 67% 9
7 PETTITT, J , HARRISON, N , STANSFIELD, I , CONNOLLY, B , MULLER, B , (2010) THE EVOLUTION OF SPLICED LEADER TRANS-SPLICING IN NEMATODES.BIOCHEMICAL SOCIETY TRANSACTIONS. VOL. 38. ISSUE . P. 1125-1130 35 65% 7
8 CHUANG, TJ , WU, CS , CHEN, CY , HUNG, LY , CHIANG, TW , YANG, MY , (2016) NCLSCAN: ACCURATE IDENTIFICATION OF NON-CO-LINEAR TRANSCRIPTS (FUSION, TRANS-SPLICING AND CIRCULAR RNA) WITH A GOOD BALANCE BETWEEN SENSITIVITY AND PRECISION.NUCLEIC ACIDS RESEARCH. VOL. 44. ISSUE 3. P. - 42 44% 1
9 MORTON, JJ , BLUMENTHAL, T , (2011) RNA PROCESSING IN C. ELEGANS.CAENORHABDITIS ELEGANS: MOLECULAR GENETICS AND DEVELOPMENT, SECOND EDITION. VOL. 106. ISSUE . P. 187 -217 54 40% 6
10 LIU, S , TSAI, WH , DING, Y , CHEN, R , FANG, Z , HUO, ZG , KIM, S , MA, TZ , CHANG, TY , PRIEDIGKEIT, NM , ET AL (2016) COMPREHENSIVE EVALUATION OF FUSION TRANSCRIPT DETECTION ALGORITHMS AND A META-CALLER TO COMBINE TOP PERFORMING METHODS IN PAIRED-END RNA-SEQ DATA.NUCLEIC ACIDS RESEARCH. VOL. 44. ISSUE 5. P. - 26 51% 6

Classes with closest relation at Level 1


Rank Class id link
1 25502 CIRCULAR RNA//CIRCRNA//BACK SPLICING
2 7400 RNA SEQ//TRANSCRIPTOME ASSEMBLY//RNA SEQUENCING
3 22783 BIDIRECTIONAL PROMOTER//OPERON PREDICTION//INTERGENIC DISTANCE
4 8778 PCA3//TMPRSS2 ERG//PROSTATE CANCER ANTIGEN 3
5 780 TRYPANOSOMA BRUCEI//MOLECULAR AND BIOCHEMICAL PARASITOLOGY//TRYPANOSOME
6 27780 CUTICLIN//NEMATODE CUTICLE//CUT 1 LIKE PROTEINS
7 36483 GENOMIC DATA VISUALIZATION//ALTERNATE ASSEMBLIES OF COW GENOMES//BAC FISH MAPPING
8 3965 EVOLUT CANC//CANCER GENOME//CANCER GENOMICS
9 785 SR PROTEINS//ALTERNATIVE SPLICING//POLYPYRIMIDINE TRACT BINDING PROTEIN
10 3668 SPLICEOSOME//PRE MRNA SPLICING//SNRNP

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