Class information for:
Level 1: DNA COPY NUMBER//HLTH SOLUT GRP//ARRAY CGH

Basic class information
Class id #P Avg. number of
references		 Database coverage
of references
12230 922 34.9 85%


Bar chart of Publication_year

Last years might be incomplete

Hierarchy of classes
The table includes all classes above and classes immediately below the current class.


Cluster id Level Cluster label #P
0 4 BIOCHEMISTRY & MOLECULAR BIOLOGY//CELL BIOLOGY//ONCOLOGY 4064930
90 3       MATHEMATICAL & COMPUTATIONAL BIOLOGY//BIOINFORMATICS//BMC BIOINFORMATICS 77178
1101 2             BIOINFORMATICS//COPY NUMBER VARIATION//NEXT GENERATION SEQUENCING 9808
12230 1                   DNA COPY NUMBER//HLTH SOLUT GRP//ARRAY CGH 922

Terms with highest relevance score


rank Term termType Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 DNA COPY NUMBER authKW 264905 3% 33% 24
2 HLTH SOLUT GRP address 132464 1% 67% 6
3 ARRAY CGH authKW 132136 7% 6% 67
4 COPY NUMBER ALTERATION authKW 108667 2% 21% 16
5 MATRIX CGH authKW 88310 0% 67% 4
6 CIRCULAR BINARY SEGMENTATION authKW 74512 0% 75% 3
7 ACGH DATA authKW 66234 0% 100% 2
8 ACGH MICROARRAY DATA authKW 66234 0% 100% 2
9 ARRAY CGH DATA authKW 66234 0% 100% 2
10 BREAST CANC FUNCT GEN address 66234 0% 100% 2

Web of Science journal categories


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 Mathematical & Computational Biology 30170 33% 0% 306
2 Biochemical Research Methods 7262 30% 0% 275
3 Biotechnology & Applied Microbiology 6275 35% 0% 325
4 Genetics & Heredity 3405 26% 0% 239
5 Statistics & Probability 2064 12% 0% 110
6 Oncology 1650 23% 0% 214
7 Pathology 164 4% 0% 41
8 Biochemistry & Molecular Biology 130 14% 0% 132
9 Computer Science, Interdisciplinary Applications 118 4% 0% 34
10 Cell Biology 32 5% 0% 48

Address terms


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 HLTH SOLUT GRP 132464 1% 67% 6
2 BREAST CANC FUNCT GEN 66234 0% 100% 2
3 INTEGRE BIOINFORMAT 66234 0% 100% 2
4 CANC GENET DEV BIOL 39977 1% 15% 8
5 ADDENBROOKES HOPSITAL 33117 0% 100% 1
6 ASSAY DEV BIOINFORMAT 33117 0% 100% 1
7 BELFER CANC GENOM 33117 0% 100% 1
8 BIOENGN INFORMAT RADIOL 33117 0% 100% 1
9 BIOINFORMAT PREDICT GENOM TEAM 33117 0% 100% 1
10 BIOL BIOCHEM BIOINFORMAT 33117 0% 100% 1

Journals


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 BIOINFORMATICS 55861 15% 1% 134
2 BMC BIOINFORMATICS 22822 8% 1% 72
3 BIOSTATISTICS 12364 2% 2% 17
4 BMC MEDICAL GENOMICS 8864 2% 2% 14
5 STATISTICAL APPLICATIONS IN GENETICS AND MOLECULAR BIOLOGY 5294 1% 2% 9
6 GENES CHROMOSOMES & CANCER 5029 2% 1% 22
7 IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS 4197 1% 1% 12
8 BMC GENOMICS 3499 3% 0% 32
9 ANNALS OF APPLIED STATISTICS 3230 1% 1% 9
10 EXPERT REVIEW OF MOLECULAR DIAGNOSTICS 2620 1% 1% 9

Author Key Words


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class		 LCSH search Wikipedia search
1 DNA COPY NUMBER 264905 3% 33% 24 Search DNA+COPY+NUMBER Search DNA+COPY+NUMBER
2 ARRAY CGH 132136 7% 6% 67 Search ARRAY+CGH Search ARRAY+CGH
3 COPY NUMBER ALTERATION 108667 2% 21% 16 Search COPY+NUMBER+ALTERATION Search COPY+NUMBER+ALTERATION
4 MATRIX CGH 88310 0% 67% 4 Search MATRIX+CGH Search MATRIX+CGH
5 CIRCULAR BINARY SEGMENTATION 74512 0% 75% 3 Search CIRCULAR+BINARY+SEGMENTATION Search CIRCULAR+BINARY+SEGMENTATION
6 ACGH DATA 66234 0% 100% 2 Search ACGH+DATA Search ACGH+DATA
7 ACGH MICROARRAY DATA 66234 0% 100% 2 Search ACGH+MICROARRAY+DATA Search ACGH+MICROARRAY+DATA
8 ARRAY CGH DATA 66234 0% 100% 2 Search ARRAY+CGH+DATA Search ARRAY+CGH+DATA
9 GENOTYPE CALLING ERROR 66234 0% 100% 2 Search GENOTYPE+CALLING+ERROR Search GENOTYPE+CALLING+ERROR
10 COPY NUMBER PROFILE 44155 0% 67% 2 Search COPY+NUMBER+PROFILE Search COPY+NUMBER+PROFILE

Core articles
The table includes core articles in the class. The following variables is taken into account for the relevance score of an article in a cluster c:
(1) Number of references referring to publications in the class.
(2) Share of total number of active references referring to publications in the class.
(3) Age of the article. New articles get higher score than old articles.
(4) Citation rate, normalized to year.


Rank Reference # ref.
in cl.		 Shr. of ref. in
cl.		 Citations
1 VAN DE WIEL, MA , PICARD, F , VAN WIERINGEN, WN , YLSTRA, B , (2011) PREPROCESSING AND DOWNSTREAM ANALYSIS OF MICROARRAY DNA COPY NUMBER PROFILES.BRIEFINGS IN BIOINFORMATICS. VOL. 12. ISSUE 1. P. 10 -21 41 75% 19
2 CHEN, H , XING, HP , ZHANG, NR , (2011) ESTIMATION OF PARENT SPECIFIC DNA COPY NUMBER IN TUMORS USING HIGH-DENSITY GENOTYPING ARRAYS.PLOS COMPUTATIONAL BIOLOGY. VOL. 7. ISSUE 1. P. - 30 81% 19
3 SEIFERT, M , GOHR, A , STRICKERT, M , GROSSE, I , (2012) PARSIMONIOUS HIGHER-ORDER HIDDEN MARKOV MODELS FOR IMPROVED ARRAY-CGH ANALYSIS WITH APPLICATIONS TO ARABIDOPSIS THALIANA.PLOS COMPUTATIONAL BIOLOGY. VOL. 8. ISSUE 1. P. - 45 51% 4
4 NILSEN, G , LIESTOL, K , VAN LOO, P , VOLLAN, HKM , EIDE, MB , RUEDA, OM , CHIN, SF , RUSSELL, R , BAUMBUSCH, LO , CALDAS, C , ET AL (2012) COPYNUMBER: EFFICIENT ALGORITHMS FOR SINGLE- AND MULTI-TRACK COPY NUMBER SEGMENTATION.BMC GENOMICS. VOL. 13. ISSUE . P. - 26 79% 25
5 PICARD, F , LEBARBIER, E , HOEBEKE, M , RIGAILL, G , THIAM, B , ROBIN, S , (2011) JOINT SEGMENTATION, CALLING, AND NORMALIZATION OF MULTIPLE CGH PROFILES.BIOSTATISTICS. VOL. 12. ISSUE 3. P. 413 -428 24 86% 33
6 YU, TW , YE, H , SUN, W , LI, KC , CHEN, ZG , JACOBS, S , BAILEY, DK , WONG, DT , ZHOU, XF , (2007) A FORWARD-BACKWARD FRAGMENT ASSEMBLING ALGORITHM FOR THE IDENTIFICATION OF GENOMIC AMPLIFICATION AND DELETION BREAKPOINTS USING HIGH-DENSITY SINGLE NUCLEOTIDE POLYMORPHISM (SNP) ARRAY.BMC BIOINFORMATICS. VOL. 8. ISSUE . P. - 25 96% 12
7 OLSHEN, AB , BENGTSSON, H , NEUVIAL, P , SPELLMAN, PT , OLSHEN, RA , SESHAN, VE , (2011) PARENT-SPECIFIC COPY NUMBER IN PAIRED TUMOR-NORMAL STUDIES USING CIRCULAR BINARY SEGMENTATION.BIOINFORMATICS. VOL. 27. ISSUE 15. P. 2038 -2046 27 75% 26
8 DALMASSO, C , BROET, P , (2011) DETECTION OF CHROMOSOMAL ABNORMALITIES USING HIGH RESOLUTION ARRAYS IN CLINICAL CANCER RESEARCH.JOURNAL OF BIOMEDICAL INFORMATICS. VOL. 44. ISSUE 6. P. 936-942 31 70% 1
9 GREENMAN, CD , BIGNELL, G , BUTLER, A , EDKINS, S , HINTON, J , BEARE, D , SWAMY, S , SANTARIUS, T , CHEN, L , WIDAA, S , ET AL (2010) PICNIC: AN ALGORITHM TO PREDICT ABSOLUTE ALLELIC COPY NUMBER VARIATION WITH MICROARRAY CANCER DATA.BIOSTATISTICS. VOL. 11. ISSUE 1. P. 164 -175 25 71% 87
10 LAI, WR , JOHNSON, MD , KUCHERLAPATI, R , PARK, PJ , (2005) COMPARATIVE ANALYSIS OF ALGORITHMS FOR IDENTIFYING AMPLIFICATIONS AND DELETIONS IN ARRAY CGH DATA.BIOINFORMATICS. VOL. 21. ISSUE 19. P. 3763 -3770 23 82% 230

Classes with closest relation at Level 1


Rank Class id link
1 5569 COPY NUMBER VARIATION//COPY NUMBER VARIANTS//STRUCTURAL VARIATION
2 15816 DCC GENE//BIOPHYS CYTOMETRY//DCC
3 3965 EVOLUT CANC//CANCER GENOME//CANCER GENOMICS
4 34666 ZNF703//C8ORF4//THYROID CANCER 1
5 6924 SUBTELOMERIC REARRANGEMENTS//ARRAY CGH//MBD5
6 12433 EI24//CLIN BREAST CARE PROJECT//LOSS OF HETEROZYGOSITY
7 10418 SUPERNUMERARY MARKER CHROMOSOME//MARKER CHROMOSOME//SMALL SUPERNUMERARY MARKER CHROMOSOME
8 16413 WHOLE GENOME AMPLIFICATION//MULTIPLE DISPLACEMENT AMPLIFICATION//PHI29 DNA POLYMERASE
9 22399 LUNG CANCER DIAGNOSIS AND PROGNOSIS//AIRWAY EPITHELIUM DEVELOPMENT//ANAT CYTOL PATHOL ALBERT BONNIOT
10 34385 TPD52//TUMOR PROTEIN D52//MIR 139 5P

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