Class information for:
Level 1: GENOME ASSEMBLY//BIOINFORMATICS//VARIANT CALLING

Basic class information
Class id #P Avg. number of
references		 Database coverage
of references
2013 2386 32.7 81%


Bar chart of Publication_year

Last years might be incomplete

Hierarchy of classes
The table includes all classes above and classes immediately below the current class.


Cluster id Level Cluster label #P
0 4 BIOCHEMISTRY & MOLECULAR BIOLOGY//CELL BIOLOGY//ONCOLOGY 4064930
90 3       MATHEMATICAL & COMPUTATIONAL BIOLOGY//BIOINFORMATICS//BMC BIOINFORMATICS 77178
1101 2             BIOINFORMATICS//COPY NUMBER VARIATION//NEXT GENERATION SEQUENCING 9808
2013 1                   GENOME ASSEMBLY//BIOINFORMATICS//VARIANT CALLING 2386

Terms with highest relevance score


rank Term termType Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 GENOME ASSEMBLY authKW 247821 2% 37% 53
2 BIOINFORMATICS journal 209211 17% 4% 417
3 VARIANT CALLING authKW 178114 1% 61% 23
4 NEXT GENERATION SEQUENCING authKW 163766 10% 5% 236
5 MATHEMATICAL & COMPUTATIONAL BIOLOGY WoSSC 104985 38% 1% 917
6 READ MAPPING authKW 98426 0% 77% 10
7 SIMONS QUANTITAT BIOL address 96329 1% 47% 16
8 GIGASCIENCE journal 78831 1% 21% 30
9 BMC BIOINFORMATICS journal 77240 9% 3% 213
10 NANOPORE SEQUENCING authKW 76763 1% 50% 12

Web of Science journal categories


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with term
in class
1 Mathematical & Computational Biology 104985 38% 1% 917
2 Biotechnology & Applied Microbiology 46374 58% 0% 1394
3 Biochemical Research Methods 41555 44% 0% 1046
4 Genetics & Heredity 13333 32% 0% 752
5 Biochemistry & Molecular Biology 881 20% 0% 472
6 Computer Science, Interdisciplinary Applications 358 4% 0% 94
7 Statistics & Probability 230 3% 0% 70
8 Computer Science, Theory & Methods 90 2% 0% 57
9 Multidisciplinary Sciences 69 1% 0% 28
10 Medical Informatics 58 1% 0% 18

Address terms


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 SIMONS QUANTITAT BIOL 96329 1% 47% 16
2 STANLEY COGNIT GENOM 30451 0% 24% 10
3 HKU BGI BIOINFORMAT ALGORITHMS 28789 0% 75% 3
4 GRYC I3M 25592 0% 100% 2
5 INFORMAT COMP CIR 25592 0% 100% 2
6 INVEST SISTEMAS INTELIGENTES 25592 0% 100% 2
7 TEXAS ANIM HLTH COMMISS 25592 0% 100% 2
8 HKU BGI BIOINFORMAT ALGORITHMS CORE TECHNOL 24601 0% 38% 5
9 STANFORD GENOME TECHNOL 20002 1% 7% 22
10 ALGORITHM BIOL 19917 0% 17% 9

Journals


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 BIOINFORMATICS 209211 17% 4% 417
2 GIGASCIENCE 78831 1% 21% 30
3 BMC BIOINFORMATICS 77240 9% 3% 213
4 GENOME RESEARCH 25082 2% 4% 52
5 BMC GENOMICS 22465 5% 1% 130
6 BRIEFINGS IN BIOINFORMATICS 18792 1% 5% 32
7 GENOME BIOLOGY 16401 3% 2% 62
8 JOURNAL OF COMPUTATIONAL BIOLOGY 11793 2% 2% 38
9 NATURE METHODS 11440 2% 2% 39
10 BIOTECHFORUM ( BTF ) 9079 2% 2% 43

Author Key Words


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class		 LCSH search Wikipedia search
1 GENOME ASSEMBLY 247821 2% 37% 53 Search GENOME+ASSEMBLY Search GENOME+ASSEMBLY
2 VARIANT CALLING 178114 1% 61% 23 Search VARIANT+CALLING Search VARIANT+CALLING
3 NEXT GENERATION SEQUENCING 163766 10% 5% 236 Search NEXT+GENERATION+SEQUENCING Search NEXT+GENERATION+SEQUENCING
4 READ MAPPING 98426 0% 77% 10 Search READ+MAPPING Search READ+MAPPING
5 NANOPORE SEQUENCING 76763 1% 50% 12 Search NANOPORE+SEQUENCING Search NANOPORE+SEQUENCING
6 MINION 63980 0% 100% 5 Search MINION Search MINION
7 SHORT READ ALIGNMENT 53315 0% 83% 5 Search SHORT+READ+ALIGNMENT Search SHORT+READ+ALIGNMENT
8 DE BRUIJN GRAPH 52735 1% 21% 20 Search DE+BRUIJN+GRAPH Search DE+BRUIJN+GRAPH
9 OXFORD NANOPORE 51184 0% 100% 4 Search OXFORD+NANOPORE Search OXFORD+NANOPORE
10 GENOME FINISHING 45697 0% 71% 5 Search GENOME+FINISHING Search GENOME+FINISHING

Core articles
The table includes core articles in the class. The following variables is taken into account for the relevance score of an article in a cluster c:
(1) Number of references referring to publications in the class.
(2) Share of total number of active references referring to publications in the class.
(3) Age of the article. New articles get higher score than old articles.
(4) Citation rate, normalized to year.


Rank Reference # ref.
in cl.		 Shr. of ref. in
cl.		 Citations
1 LAEHNEMANN, D , BORKHARDT, A , MCHARDY, AC , (2016) DENOISING DNA DEEP SEQUENCING DATA-HIGH-THROUGHPUT SEQUENCING ERRORS AND THEIR CORRECTION.BRIEFINGS IN BIOINFORMATICS. VOL. 17. ISSUE 1. P. 154 -179 78 90% 16
2 EL-METWALLY, S , HAMZA, T , ZAKARIA, M , HELMY, M , (2013) NEXT-GENERATION SEQUENCE ASSEMBLY: FOUR STAGES OF DATA PROCESSING AND COMPUTATIONAL CHALLENGES.PLOS COMPUTATIONAL BIOLOGY. VOL. 9. ISSUE 12. P. - 79 86% 29
3 MILLER, JR , KOREN, S , SUTTON, G , (2010) ASSEMBLY ALGORITHMS FOR NEXT-GENERATION SEQUENCING DATA.GENOMICS. VOL. 95. ISSUE 6. P. 315 -327 58 81% 315
4 METZKER, ML , (2010) APPLICATIONS OF NEXT-GENERATION SEQUENCING SEQUENCING TECHNOLOGIES - THE NEXT GENERATION.NATURE REVIEWS GENETICS. VOL. 11. ISSUE 1. P. 31 -46 42 46% 2273
5 HE, YM , ZHANG, Z , PENG, XQ , WU, FX , WANG, JX , (2013) DE NOVO ASSEMBLY METHODS FOR NEXT GENERATION SEQUENCING DATA.TSINGHUA SCIENCE AND TECHNOLOGY. VOL. 18. ISSUE 5. P. 500 -514 69 90% 4
6 ALTSHULER, D , DALY, MJ , DEPRISTO, MA , BANKS, E , POPLIN, R , GARIMELLA, KV , MAGUIRE, JR , HARTL, C , PHILIPPAKIS, AA , DEL ANGEL, G , ET AL (2011) A FRAMEWORK FOR VARIATION DISCOVERY AND GENOTYPING USING NEXT-GENERATION DNA SEQUENCING DATA.NATURE GENETICS. VOL. 43. ISSUE 5. P. 491 -+ 23 66% 2297
7 LI, H , DURBIN, R , (2009) FAST AND ACCURATE SHORT READ ALIGNMENT WITH BURROWS-WHEELER TRANSFORM.BIOINFORMATICS. VOL. 25. ISSUE 14. P. 1754 -1760 12 86% 6933
8 PASZKIEWICZ, K , STUDHOLME, DJ , (2010) DE NOVO ASSEMBLY OF SHORT SEQUENCE READS.BRIEFINGS IN BIOINFORMATICS. VOL. 11. ISSUE 5. P. 457-472 65 78% 65
9 SIMPSON, JT , POP, M , (2015) THE THEORY AND PRACTICE OF GENOME SEQUENCE ASSEMBLY.ANNUAL REVIEW OF GENOMICS AND HUMAN GENETICS, VOL 16. VOL. 16. ISSUE . P. 153 -172 68 72% 6
10 ALIC, AS , RUZAFA, D , DOPAZO, J , BLANQUER, I , (2016) OBJECTIVE REVIEW OF DE NOVO STAND-ALONE ERROR CORRECTION METHODS FOR NGS DATA.WILEY INTERDISCIPLINARY REVIEWS-COMPUTATIONAL MOLECULAR SCIENCE. VOL. 6. ISSUE 2. P. 111 -146 69 59% 2

Classes with closest relation at Level 1


Rank Class id link
1 7400 RNA SEQ//TRANSCRIPTOME ASSEMBLY//RNA SEQUENCING
2 10177 RETURN OF RESULTS//INCIDENTAL FINDINGS//SECONDARY FINDINGS
3 5569 COPY NUMBER VARIATION//COPY NUMBER VARIANTS//STRUCTURAL VARIATION
4 18864 DATABASE LIFE SCI//DDBJ//EMTRAIN
5 15359 STANDARDS IN GENOMIC SCIENCES//BIOL DATA MANAGEMENT TECHNOL//GEBA
6 3965 EVOLUT CANC//CANCER GENOME//CANCER GENOMICS
7 1803 METAGENOMICS//MICROBIOME//HUMAN MICROBIOME
8 36483 GENOMIC DATA VISUALIZATION//ALTERNATE ASSEMBLIES OF COW GENOMES//BAC FISH MAPPING
9 24039 TILLING//SHOREMAPPING//MAPPING BY SEQUENCING
10 29672 PHYLODYNAMICS//TRANSMISSION TREE//SERIAL SAMPLES

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