Class information for:
Level 1: EVOLUTIONARY BIOINFORMAT//FOLD SUPERFAMILY//EVOLUTION OF DOMAIN ARCHITECTURE

Basic class information
Class id #P Avg. number of
references		 Database coverage
of references
24117 323 44.8 85%


Bar chart of Publication_year

Last years might be incomplete

Hierarchy of classes
The table includes all classes above and classes immediately below the current class.


Cluster id Level Cluster label #P
0 4 BIOCHEMISTRY & MOLECULAR BIOLOGY//CELL BIOLOGY//ONCOLOGY 4064930
90 3       MATHEMATICAL & COMPUTATIONAL BIOLOGY//BIOINFORMATICS//BMC BIOINFORMATICS 77178
126 2             MOLECULAR BIOLOGY AND EVOLUTION//BIOINFORMATICS//MATHEMATICAL & COMPUTATIONAL BIOLOGY 23963
24117 1                   EVOLUTIONARY BIOINFORMAT//FOLD SUPERFAMILY//EVOLUTION OF DOMAIN ARCHITECTURE 323

Terms with highest relevance score


rank Term termType Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 EVOLUTIONARY BIOINFORMAT address 1143868 7% 55% 22
2 FOLD SUPERFAMILY authKW 302514 1% 80% 4
3 EVOLUTION OF DOMAIN ARCHITECTURE authKW 283608 1% 100% 3
4 MODULAR PROTEIN EVOLUTION authKW 283608 1% 100% 3
5 DOMAIN ARCHITECTURE authKW 196330 3% 23% 9
6 BIRTH DEATH STOCHASTIC PROCESSES authKW 189072 1% 100% 2
7 DOMAIN GRAPH authKW 189072 1% 100% 2
8 EPAKTOLOGS authKW 189072 1% 100% 2
9 EXPRESSION QUANTITATIVE LOCI authKW 189072 1% 100% 2
10 PHENOME GENOME ASSOCIATION authKW 189072 1% 100% 2

Web of Science journal categories


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 Mathematical & Computational Biology 5554 24% 0% 78
2 Biochemical Research Methods 1510 23% 0% 75
3 Biochemistry & Molecular Biology 1335 53% 0% 172
4 Genetics & Heredity 1171 26% 0% 83
5 Biotechnology & Applied Microbiology 985 24% 0% 78
6 Evolutionary Biology 922 11% 0% 37
7 Biophysics 65 6% 0% 20
8 Cell Biology 36 7% 0% 24
9 Biology 23 3% 0% 10
10 Mathematics, Interdisciplinary Applications 4 1% 0% 4

Address terms


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 EVOLUTIONARY BIOINFORMAT 1143868 7% 55% 22
2 PROGRAM COMPUTAT ORG SOC 189072 1% 100% 2
3 UMR 7238 BIOL COMPUTAT QUANTITAT 189072 1% 100% 2
4 EVOLUTIONARY BIOINFORMAT GRP 162053 2% 29% 6
5 CHAIR ACTUARIAL MATH 94536 0% 100% 1
6 CHAIR PROBABIL THEORY MATH STAT 94536 0% 100% 1
7 DOCTORAL STUDIES INFORMAT ITS PLICAT 94536 0% 100% 1
8 EVOLUT BIO ERSTAT 94536 0% 100% 1
9 INRIA RECH BORDEAUX SUD OUEST 94536 0% 100% 1
10 INSERMU1135ERL IMMUNOL MALAD INFECT CIMI 94536 0% 100% 1

Journals


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 BIOINFORMATICS 9073 10% 0% 32
2 CANCER GENOMICS & PROTEOMICS 7195 1% 2% 4
3 GENES 5577 2% 1% 5
4 DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION 5216 2% 1% 6
5 NUCLEIC ACIDS RESEARCH 4004 13% 0% 41
6 MOLECULAR BIOLOGY AND EVOLUTION 3308 4% 0% 14
7 BMC BIOINFORMATICS 3205 5% 0% 16
8 BMC EVOLUTIONARY BIOLOGY 2824 3% 0% 10
9 GENOME BIOLOGY 2554 3% 0% 9
10 ARCHAEA-AN INTERNATIONAL MICROBIOLOGICAL JOURNAL 2551 1% 1% 2

Author Key Words


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class		 LCSH search Wikipedia search
1 FOLD SUPERFAMILY 302514 1% 80% 4 Search FOLD+SUPERFAMILY Search FOLD+SUPERFAMILY
2 EVOLUTION OF DOMAIN ARCHITECTURE 283608 1% 100% 3 Search EVOLUTION+OF+DOMAIN+ARCHITECTURE Search EVOLUTION+OF+DOMAIN+ARCHITECTURE
3 MODULAR PROTEIN EVOLUTION 283608 1% 100% 3 Search MODULAR+PROTEIN+EVOLUTION Search MODULAR+PROTEIN+EVOLUTION
4 DOMAIN ARCHITECTURE 196330 3% 23% 9 Search DOMAIN+ARCHITECTURE Search DOMAIN+ARCHITECTURE
5 BIRTH DEATH STOCHASTIC PROCESSES 189072 1% 100% 2 Search BIRTH+DEATH+STOCHASTIC+PROCESSES Search BIRTH+DEATH+STOCHASTIC+PROCESSES
6 DOMAIN GRAPH 189072 1% 100% 2 Search DOMAIN+GRAPH Search DOMAIN+GRAPH
7 EPAKTOLOGS 189072 1% 100% 2 Search EPAKTOLOGS Search EPAKTOLOGS
8 EXPRESSION QUANTITATIVE LOCI 189072 1% 100% 2 Search EXPRESSION+QUANTITATIVE+LOCI Search EXPRESSION+QUANTITATIVE+LOCI
9 PHENOME GENOME ASSOCIATION 189072 1% 100% 2 Search PHENOME+GENOME+ASSOCIATION Search PHENOME+GENOME+ASSOCIATION
10 UNCHARACTERIZED PROTEINS 189072 1% 100% 2 Search UNCHARACTERIZED+PROTEINS Search UNCHARACTERIZED+PROTEINS

Core articles
The table includes core articles in the class. The following variables is taken into account for the relevance score of an article in a cluster c:
(1) Number of references referring to publications in the class.
(2) Share of total number of active references referring to publications in the class.
(3) Age of the article. New articles get higher score than old articles.
(4) Citation rate, normalized to year.


Rank Reference # ref.
in cl.		 Shr. of ref. in
cl.		 Citations
1 LINKEVICIUTE, V , RACKHAM, OJL , GOUGH, J , OATES, ME , FANG, H , (2015) FUNCTION-SELECTIVE DOMAIN ARCHITECTURE PLASTICITY POTENTIALS IN EUKARYOTIC GENOME EVOLUTION.BIOCHIMIE. VOL. 119. ISSUE . P. 269 -277 27 79% 2
2 COHEN-GIHON, I , FONG, JH , SHARAN, R , NUSSINOV, R , PRZYTYCKA, TM , PANCHENKO, AR , (2011) EVOLUTION OF DOMAIN PROMISCUITY IN EUKARYOTIC GENOMES-A PERSPECTIVE FROM THE INFERRED ANCESTRAL DOMAIN ARCHITECTURES.MOLECULAR BIOSYSTEMS. VOL. 7. ISSUE 3. P. 784 -792 30 73% 8
3 SCAIEWICZ, A , LEVITT, M , (2015) THE LANGUAGE OF THE PROTEIN UNIVERSE.CURRENT OPINION IN GENETICS & DEVELOPMENT. VOL. 35. ISSUE . P. 50 -56 32 52% 3
4 MOORE, AD , GRATH, S , SCHULER, A , HUYLMANS, AK , BORNBERG-BAUER, E , (2013) QUANTIFICATION AND FUNCTIONAL ANALYSIS OF MODULAR PROTEIN EVOLUTION IN A DENSE PHYLOGENETIC TREE.BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS. VOL. 1834. ISSUE 5. P. 898 -907 34 41% 10
5 NASIR, A , KIM, KM , CAETANO-ANOLLES, G , (2014) GLOBAL PATTERNS OF PROTEIN DOMAIN GAIN AND LOSS IN SUPERKINGDOMS.PLOS COMPUTATIONAL BIOLOGY. VOL. 10. ISSUE 1. P. - 31 38% 10
6 BORNBERG-BAUER, E , ALBA, MM , (2013) DYNAMICS AND ADAPTIVE BENEFITS OF MODULAR PROTEIN EVOLUTION.CURRENT OPINION IN STRUCTURAL BIOLOGY. VOL. 23. ISSUE 3. P. 459-466 28 41% 15
7 LEES, JG , DAWSON, NL , SILLITOE, I , ORENGO, CA , (2016) FUNCTIONAL INNOVATION FROM CHANGES IN PROTEIN DOMAINS AND THEIR COMBINATIONS.CURRENT OPINION IN STRUCTURAL BIOLOGY. VOL. 38. ISSUE . P. 44 -52 25 35% 3
8 WANG, ML , CAETANO-ANOLLES, G , (2009) THE EVOLUTIONARY MECHANICS OF DOMAIN ORGANIZATION IN PROTEOMES AND THE RISE OF MODULARITY IN THE PROTEIN WORLD.STRUCTURE. VOL. 17. ISSUE 1. P. 66-78 25 43% 32
9 HSU, CH , CHEN, CK , HWANG, MJ , (2013) THE ARCHITECTURAL DESIGN OF NETWORKS OF PROTEIN DOMAIN ARCHITECTURES.BIOLOGY LETTERS. VOL. 9. ISSUE 4. P. - 13 81% 1
10 ZMASEK, CM , GODZIK, A , (2012) THIS DEJA VU FEELING-ANALYSIS OF MULTIDOMAIN PROTEIN EVOLUTION IN EUKARYOTIC GENOMES.PLOS COMPUTATIONAL BIOLOGY. VOL. 8. ISSUE 11. P. - 22 47% 8

Classes with closest relation at Level 1


Rank Class id link
1 35727 CLOSED LOOPS//GENOME ERS//SKEW PAIRS
2 4994 PROTEIN STRUCTURE COMPARISON//PROTEIN STRUCTURE ALIGNMENT//STRUCTURE COMPARISON
3 20039 ORTHOLOGY//BIDIRECTIONAL BEST HIT//GENOME FUNCTIONAL PREDICTION
4 9683 EMBL OUTSTN//LECTURE NOTES IN BIOINFORMATICS//PROT INFORMAT OURCE
5 9196 PROTEIN FUNCTION PREDICTION//COMPLEX SCI SOFTWARE//PHYLOGENETIC MOTIFS
6 6844 LATERAL GENE TRANSFER//TREE OF LIFE//HORIZONTAL GENE TRANSFER
7 17904 INTRON GAIN//INTRON LOSS//INTRON EVOLUTION
8 681 PROTEIN INTERACTION NETWORK//PROTEIN PROTEIN INTERACTION NETWORK//ESSENTIAL PROTEINS
9 27186 CHOANOFLAGELLATES//ACANTHOECIDA//LORICA ASSEMBLY
10 18864 DATABASE LIFE SCI//DDBJ//EMTRAIN

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