Class information for:
Level 1: PROTEIN PROTEIN DOCKING//CAPRI//PROTEIN DOCKING

Basic class information
Class id #P Avg. number of
references		 Database coverage
of references
6443 1483 50.5 87%


Bar chart of Publication_year

Last years might be incomplete

Hierarchy of classes
The table includes all classes above and classes immediately below the current class.


Cluster id Level Cluster label #P
0 4 BIOCHEMISTRY & MOLECULAR BIOLOGY//CELL BIOLOGY//ONCOLOGY 4064930
219 3       PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS//PROTEIN FOLDING//PROTEIN STRUCTURE PREDICTION 50409
365 2             PROTEIN STRUCTURE PREDICTION//PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS//PSEUDO AMINO ACID COMPOSITION 17331
6443 1                   PROTEIN PROTEIN DOCKING//CAPRI//PROTEIN DOCKING 1483

Terms with highest relevance score


rank Term termType Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 PROTEIN PROTEIN DOCKING authKW 931233 7% 47% 97
2 CAPRI authKW 838139 4% 77% 53
3 PROTEIN DOCKING authKW 605899 4% 45% 66
4 PROTEIN PROTEIN INTERFACE authKW 471627 3% 55% 42
5 PROTEIN INTERFACE authKW 298835 2% 48% 30
6 PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS journal 292859 20% 5% 301
7 SHAPE COMPLEMENTARITY authKW 245375 1% 57% 21
8 INTERFACE PREDICTION authKW 210816 1% 64% 16
9 PROTEIN PROTEIN INTERACTION authKW 209483 17% 4% 256
10 ZDOCK authKW 185291 1% 75% 12

Web of Science journal categories


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 Biophysics 12007 33% 0% 486
2 Mathematical & Computational Biology 11782 17% 0% 245
3 Biochemistry & Molecular Biology 9411 65% 0% 959
4 Biochemical Research Methods 4690 19% 0% 286
5 Biotechnology & Applied Microbiology 1113 13% 0% 190
6 Computer Science, Interdisciplinary Applications 674 6% 0% 94
7 Cell Biology 108 6% 0% 96
8 Chemistry, Medicinal 85 3% 0% 45
9 Computer Science, Information Systems 61 2% 0% 34
10 Chemistry, Multidisciplinary 32 6% 0% 94

Address terms


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 SACKLER MOL MED 178874 4% 16% 55
2 HUMAN GENET MOL MED 102036 3% 10% 50
3 BIOMOL MODELLING 91474 1% 22% 20
4 BC6 61766 0% 100% 3
5 CP 263 61766 0% 100% 3
6 EXPT COMPUTAT BIOL 58137 2% 9% 31
7 IBBMC UMR 8619 54900 0% 67% 4
8 JOINT BSC IRB PROGRAMME COMPUTAT BIOL 54892 1% 33% 8
9 JOINT BSC IRB PROGRAM COMPUTAT BIOL 54166 1% 26% 10
10 PROGRAM MOL COMPUTAT BIOPHYS 45847 0% 32% 7

Journals


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS 292859 20% 5% 301
2 BIOINFORMATICS 14202 6% 1% 86
3 BMC BIOINFORMATICS 14134 5% 1% 72
4 PROTEIN SCIENCE 12141 4% 1% 61
5 CURRENT OPINION IN STRUCTURAL BIOLOGY 9216 2% 1% 32
6 BMC STRUCTURAL BIOLOGY 8027 1% 3% 14
7 JOURNAL OF MOLECULAR BIOLOGY 6138 6% 0% 84
8 STRUCTURE 5508 2% 1% 32
9 JOURNAL OF CHEMICAL INFORMATION AND MODELING 4787 2% 1% 27
10 PROTEIN ENGINEERING 2920 1% 1% 18

Author Key Words


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class		 LCSH search Wikipedia search
1 PROTEIN PROTEIN DOCKING 931233 7% 47% 97 Search PROTEIN+PROTEIN+DOCKING Search PROTEIN+PROTEIN+DOCKING
2 CAPRI 838139 4% 77% 53 Search CAPRI Search CAPRI
3 PROTEIN DOCKING 605899 4% 45% 66 Search PROTEIN+DOCKING Search PROTEIN+DOCKING
4 PROTEIN PROTEIN INTERFACE 471627 3% 55% 42 Search PROTEIN+PROTEIN+INTERFACE Search PROTEIN+PROTEIN+INTERFACE
5 PROTEIN INTERFACE 298835 2% 48% 30 Search PROTEIN+INTERFACE Search PROTEIN+INTERFACE
6 SHAPE COMPLEMENTARITY 245375 1% 57% 21 Search SHAPE+COMPLEMENTARITY Search SHAPE+COMPLEMENTARITY
7 INTERFACE PREDICTION 210816 1% 64% 16 Search INTERFACE+PREDICTION Search INTERFACE+PREDICTION
8 PROTEIN PROTEIN INTERACTION 209483 17% 4% 256 Search PROTEIN+PROTEIN+INTERACTION Search PROTEIN+PROTEIN+INTERACTION
9 ZDOCK 185291 1% 75% 12 Search ZDOCK Search ZDOCK
10 UNBOUND DOCKING 144120 0% 100% 7 Search UNBOUND+DOCKING Search UNBOUND+DOCKING

Core articles
The table includes core articles in the class. The following variables is taken into account for the relevance score of an article in a cluster c:
(1) Number of references referring to publications in the class.
(2) Share of total number of active references referring to publications in the class.
(3) Age of the article. New articles get higher score than old articles.
(4) Citation rate, normalized to year.


Rank Reference # ref. in
cl.		 Shr. of ref. in
cl.		 Citations
1 HUANG, SY , (2014) SEARCH STRATEGIES AND EVALUATION IN PROTEIN-PROTEIN DOCKING: PRINCIPLES, ADVANCES AND CHALLENGES.DRUG DISCOVERY TODAY. VOL. 19. ISSUE 8. P. 1081 -1096 143 89% 21
2 RITCHIE, DW , (2008) RECENT PROGRESS AND FUTURE DIRECTIONS IN PROTEIN-PROTEIN DOCKING.CURRENT PROTEIN & PEPTIDE SCIENCE. VOL. 9. ISSUE 1. P. 1 -15 138 68% 150
3 MOREIRA, IS , FERNANDES, PA , RAMOS, MJ , (2010) PROTEIN-PROTEIN DOCKING DEALING WITH THE UNKNOWN.JOURNAL OF COMPUTATIONAL CHEMISTRY. VOL. 31. ISSUE 2. P. 317 -342 133 73% 52
4 HUANG, SY , (2015) EXPLORING THE POTENTIAL OF GLOBAL PROTEIN-PROTEIN DOCKING: AN OVERVIEW AND CRITICAL ASSESSMENT OF CURRENT PROGRAMS FOR AUTOMATIC AB INITIO DOCKING.DRUG DISCOVERY TODAY. VOL. 20. ISSUE 8. P. 969 -977 77 89% 10
5 JANIN, J , (2010) PROTEIN-PROTEIN DOCKING TESTED IN BLIND PREDICTIONS: THE CAPRI EXPERIMENT.MOLECULAR BIOSYSTEMS. VOL. 6. ISSUE 12. P. 2351 -2362 92 75% 78
6 ESMAIELBEIKI, R , KRAWCZYK, K , KNAPP, B , NEBEL, JC , DEANE, CM , (2016) PROGRESS AND CHALLENGES IN PREDICTING PROTEIN INTERFACES.BRIEFINGS IN BIOINFORMATICS. VOL. 17. ISSUE 1. P. 117 -131 96 58% 3
7 RODRIGUES, JPGLM , BONVIN, AMJJ , (2014) INTEGRATIVE COMPUTATIONAL MODELING OF PROTEIN INTERACTIONS.FEBS JOURNAL. VOL. 281. ISSUE 8. P. 1988-2003 80 75% 20
8 KESKIN, O , TUNCBAG, N , GURSOY, A , (2016) PREDICTING PROTEIN-PROTEIN INTERACTIONS FROM THE MOLECULAR TO THE PROTEOME LEVEL.CHEMICAL REVIEWS. VOL. 116. ISSUE 8. P. 4884 -4909 97 49% 6
9 FERNANDEZ-RECIO, J , (2011) PREDICTION OF PROTEIN BINDING SITES AND HOT SPOTS.WILEY INTERDISCIPLINARY REVIEWS-COMPUTATIONAL MOLECULAR SCIENCE. VOL. 1. ISSUE 5. P. 680-698 96 72% 20
10 AUMENTADO-ARMSTRONG, TT , ISTRATE, B , MURGITA, RA , (2015) ALGORITHMIC APPROACHES TO PROTEIN-PROTEIN INTERACTION SITE PREDICTION.ALGORITHMS FOR MOLECULAR BIOLOGY. VOL. 10. ISSUE . P. - 110 53% 5

Classes with closest relation at Level 1


Rank Class id link
1 9196 PROTEIN FUNCTION PREDICTION//COMPLEX SCI SOFTWARE//PHYLOGENETIC MOTIFS
2 18004 INTERACTION PROPENSITY//PROTEIN RNA INTERACTIONS//DNA BINDING RESIDUES
3 13291 COMPUTATIONAL PROTEIN DESIGN//PROTEIN DESIGN//DEAD END ELIMINATION
4 35395 DEHYDRON//ARGENTINE MATH IAM//ARGENTINO MATEMAT ALBERTO P CALDERON
5 1353 JOURNAL OF CHEMICAL INFORMATION AND MODELING//VIRTUAL SCREENING//JOURNAL OF COMPUTER-AIDED MOLECULAR DESIGN
6 681 PROTEIN INTERACTION NETWORK//PROTEIN PROTEIN INTERACTION NETWORK//ESSENTIAL PROTEINS
7 4994 PROTEIN STRUCTURE COMPARISON//PROTEIN STRUCTURE ALIGNMENT//STRUCTURE COMPARISON
8 19794 ELECTROSTATIC RATE ENHANCEMENT//ELECTROSTATIC STEERING//WEIGHTED ENSEMBLE BROWNIAN DYNAMICS
9 1409 PROTEIN STRUCTURE PREDICTION//FOLD RECOGNITION//THREADING
10 11825 FRAGMENT SCREENING//FRAGMENT BASED DRUG DISCOVERY//NMR SCREENING

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