Class information for:
Level 1: GENE INDEXED MUTANT//NAA PLANT SOIL NUTR UNIT//ORYZABASE

Basic class information
Class id #P Avg. number of
references		 Database coverage
of references
19900 485 45.2 85%


Bar chart of Publication_year

Last years might be incomplete

Hierarchy of classes
The table includes all classes above and classes immediately below the current class.


Cluster id Level Cluster label #P
0 4 BIOCHEMISTRY & MOLECULAR BIOLOGY//CELL BIOLOGY//ONCOLOGY 4064930
90 3       MATHEMATICAL & COMPUTATIONAL BIOLOGY//BIOINFORMATICS//BMC BIOINFORMATICS 77178
126 2             MOLECULAR BIOLOGY AND EVOLUTION//BIOINFORMATICS//MATHEMATICAL & COMPUTATIONAL BIOLOGY 23963
19900 1                   GENE INDEXED MUTANT//NAA PLANT SOIL NUTR UNIT//ORYZABASE 485

Terms with highest relevance score


rank Term termType Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 GENE INDEXED MUTANT authKW 125917 0% 100% 2
2 NAA PLANT SOIL NUTR UNIT address 125917 0% 100% 2
3 ORYZABASE authKW 125917 0% 100% 2
4 FUNCTIONAL GENE ANNOTATION authKW 83943 0% 67% 2
5 NAA PLANT address 83943 0% 67% 2
6 GENE CO EXPRESSION NETWORKS authKW 70825 1% 38% 3
7 GENE COEXPRESSION authKW 65574 1% 21% 5
8 ABERTAY ENVIRON address 62958 0% 100% 1
9 AGRICULTURAL OMICS authKW 62958 0% 100% 1
10 APPLEGFDB authKW 62958 0% 100% 1

Web of Science journal categories


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 Plant Sciences 4700 43% 0% 210
2 Mathematical & Computational Biology 3276 15% 0% 74
3 Biotechnology & Applied Microbiology 1344 23% 0% 112
4 Biochemical Research Methods 591 12% 0% 60
5 Biochemistry & Molecular Biology 550 31% 0% 148
6 Genetics & Heredity 531 15% 0% 72
7 Cell Biology 67 8% 0% 39
8 Agronomy 29 3% 0% 13
9 Horticulture 26 1% 0% 7
10 Multidisciplinary Sciences 16 1% 0% 6

Address terms


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 NAA PLANT SOIL NUTR UNIT 125917 0% 100% 2
2 NAA PLANT 83943 0% 67% 2
3 ABERTAY ENVIRON 62958 0% 100% 1
4 BAKER COMPUTAT BIOL ELECT COMP ENGN 62958 0% 100% 1
5 CBFP 62958 0% 100% 1
6 CENT GENET BRONNEN NEDERLAND 62958 0% 100% 1
7 CNRS 1165 62958 0% 100% 1
8 DEEP SEQ LIFE SCI 62958 0% 100% 1
9 DEP ENERGY GREAT LAKES BIOENERGY 62958 0% 100% 1
10 EXCELLENCE INTERACT LEGUME BIOINFORMAT 62958 0% 100% 1

Journals


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION 16319 3% 2% 13
2 RICE 14024 2% 3% 8
3 COMPARATIVE AND FUNCTIONAL GENOMICS 10477 2% 2% 8
4 NUCLEIC ACIDS RESEARCH 10199 16% 0% 80
5 PLANT PHYSIOLOGY 6581 10% 0% 47
6 PLANT AND CELL PHYSIOLOGY 6134 5% 0% 26
7 PLANT BIOTECHNOLOGY 4530 1% 1% 7
8 BMC PLANT BIOLOGY 3876 2% 1% 12
9 BMC BIOINFORMATICS 3329 4% 0% 20
10 BMC GENOMICS 2875 4% 0% 21

Author Key Words


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class		 LCSH search Wikipedia search
1 GENE INDEXED MUTANT 125917 0% 100% 2 Search GENE+INDEXED+MUTANT Search GENE+INDEXED+MUTANT
2 ORYZABASE 125917 0% 100% 2 Search ORYZABASE Search ORYZABASE
3 FUNCTIONAL GENE ANNOTATION 83943 0% 67% 2 Search FUNCTIONAL+GENE+ANNOTATION Search FUNCTIONAL+GENE+ANNOTATION
4 GENE CO EXPRESSION NETWORKS 70825 1% 38% 3 Search GENE+CO+EXPRESSION+NETWORKS Search GENE+CO+EXPRESSION+NETWORKS
5 GENE COEXPRESSION 65574 1% 21% 5 Search GENE+COEXPRESSION Search GENE+COEXPRESSION
6 AGRICULTURAL OMICS 62958 0% 100% 1 Search AGRICULTURAL+OMICS Search AGRICULTURAL+OMICS
7 APPLEGFDB 62958 0% 100% 1 Search APPLEGFDB Search APPLEGFDB
8 APPLICATIONS OF INTEGRATION 62958 0% 100% 1 Search APPLICATIONS+OF+INTEGRATION Search APPLICATIONS+OF+INTEGRATION
9 ARABIDOPOSIS 62958 0% 100% 1 Search ARABIDOPOSIS Search ARABIDOPOSIS
10 ARABIDOPSIS HORMONE RELATED GENE 62958 0% 100% 1 Search ARABIDOPSIS+HORMONE+RELATED+GENE Search ARABIDOPSIS+HORMONE+RELATED+GENE

Core articles
The table includes core articles in the class. The following variables is taken into account for the relevance score of an article in a cluster c:
(1) Number of references referring to publications in the class.
(2) Share of total number of active references referring to publications in the class.
(3) Age of the article. New articles get higher score than old articles.
(4) Citation rate, normalized to year.


Rank Reference # ref.
in cl.		 Shr. of ref. in
cl.		 Citations
1 SERIN, EAR , NIJVEEN, H , HILHORST, HWM , LIGTERINK, W , (2016) LEARNING FROM CO-EXPRESSION NETWORKS: POSSIBILITIES AND CHALLENGES.FRONTIERS IN PLANT SCIENCE. VOL. 7. ISSUE . P. - 43 29% 5
2 OBAYASHI, T , OKAMURA, Y , ITO, S , TADAKA, S , AOKI, Y , SHIROTA, M , KINOSHITA, K , (2014) ATTED-II IN 2014: EVALUATION OF GENE COEXPRESSION IN AGRICULTURALLY IMPORTANT PLANTS.PLANT AND CELL PHYSIOLOGY. VOL. 55. ISSUE 1. P. - 22 56% 40
3 TOHGE, T , FERNIE, AR , (2012) CO-EXPRESSION AND CO-RESPONSES: WITHIN AND BEYOND TRANSCRIPTION.FRONTIERS IN PLANT SCIENCE. VOL. 3. ISSUE . P. - 33 46% 7
4 SCHAEFER, RJ , MICHNO, JM , MYERS, CL , (2017) UNRAVELING GENE FUNCTION IN AGRICULTURAL SPECIES USING GENE CO-EXPRESSION NETWORKS.BIOCHIMICA ET BIOPHYSICA ACTA-GENE REGULATORY MECHANISMS. VOL. 1860. ISSUE 1. P. 53 -63 26 30% 1
5 TZFADIA, O , DIELS, T , DE MEYER, S , VANDEPOELE, K , AHARONI, A , VAN DE PEER, Y , (2016) COEXPNETVIZ: COMPARATIVE CO-EXPRESSION NETWORKS CONSTRUCTION AND VISUALIZATION TOOL.FRONTIERS IN PLANT SCIENCE. VOL. 6. ISSUE . P. - 16 62% 1
6 DE BODT, S , HOLLUNDER, J , NELISSEN, H , MEULEMEESTER, N , INZE, D , (2012) CORNET 2.0: INTEGRATING PLANT COEXPRESSION, PROTEIN-PROTEIN INTERACTIONS, REGULATORY INTERACTIONS, GENE ASSOCIATIONS AND FUNCTIONAL ANNOTATIONS.NEW PHYTOLOGIST. VOL. 195. ISSUE 3. P. 707-720 25 40% 31
7 FICKLIN, SP , FELTUS, FA , (2011) GENE COEXPRESSION NETWORK ALIGNMENT AND CONSERVATION OF GENE MODULES BETWEEN TWO GRASS SPECIES: MAIZE AND RICE.PLANT PHYSIOLOGY. VOL. 156. ISSUE 3. P. 1244 -1256 22 43% 55
8 OBAYASHI, T , KINOSHITA, K , (2010) COEXPRESSION LANDSCAPE IN ATTED-II: USAGE OF GENE LIST AND GENE NETWORK FOR VARIOUS TYPES OF PATHWAYS.JOURNAL OF PLANT RESEARCH. VOL. 123. ISSUE 3. P. 311-319 21 50% 35
9 OBAYASHI, T , NISHIDA, K , KASAHARA, K , KINOSHITA, K , (2011) ATTED-II UPDATES: CONDITION-SPECIFIC GENE COEXPRESSION TO EXTEND COEXPRESSION ANALYSES AND APPLICATIONS TO A BROAD RANGE OF FLOWERING PLANTS.PLANT AND CELL PHYSIOLOGY. VOL. 52. ISSUE 2. P. 213 -219 14 61% 89
10 CAO, PJ , JUNG, KH , CHOI, D , HWANG, D , ZHU, J , RONALD, PC , (2012) THE RICE OLIGONUCLEOTIDE ARRAY DATABASE: AN ATLAS OF RICE GENE EXPRESSION.RICE. VOL. 5. ISSUE . P. - 19 46% 39

Classes with closest relation at Level 1


Rank Class id link
1 20966 DYNAMICAL NETWORK BIOMARKER//EDGE BIOMARKER//ABORAT INNOVAT MATH MODELLING
2 18864 DATABASE LIFE SCI//DDBJ//EMTRAIN
3 16632 BRACHYPODIUM//BIBAC//BRACHYPODIUM DISTACHYON
4 1849 NAC TRANSCRIPTION FACTOR//AP2 ERF//ABIOTIC STRESS
5 20039 ORTHOLOGY//BIDIRECTIONAL BEST HIT//GENOME FUNCTIONAL PREDICTION
6 681 PROTEIN INTERACTION NETWORK//PROTEIN PROTEIN INTERACTION NETWORK//ESSENTIAL PROTEINS
7 18980 WRKY TRANSCRIPTION FACTOR//WRKY//WRKY PROTEIN
8 6919 CELLULOSE SYNTHASE//SECONDARY CELL WALL//CESA
9 31716 LIMS//BREEDING GENET OURCES//ATTRIBUTE MATCHING ALGORITHM
10 2901 BMC BIOINFORMATICS//MICROARRAY IMAGE//BIOINFORMATICS

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