Class information for:
Level 1: NETWORK MOTIFS//SUBGRAPH SAMPLING//PROGRAMA GENOM COMPUTAC

Basic class information
Class id #P Avg. number of
references		 Database coverage
of references
21530 415 41.7 77%


Bar chart of Publication_year

Last years might be incomplete

Hierarchy of classes
The table includes all classes above and classes immediately below the current class.


Cluster id Level Cluster label #P
0 4 BIOCHEMISTRY & MOLECULAR BIOLOGY//CELL BIOLOGY//ONCOLOGY 4064930
90 3       MATHEMATICAL & COMPUTATIONAL BIOLOGY//BIOINFORMATICS//BMC BIOINFORMATICS 77178
548 2             BMC SYSTEMS BIOLOGY//MATHEMATICAL & COMPUTATIONAL BIOLOGY//BOOLEAN NETWORKS 14655
21530 1                   NETWORK MOTIFS//SUBGRAPH SAMPLING//PROGRAMA GENOM COMPUTAC 415

Terms with highest relevance score


rank Term termType Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 NETWORK MOTIFS authKW 1177189 12% 33% 48
2 SUBGRAPH SAMPLING authKW 165550 1% 75% 3
3 PROGRAMA GENOM COMPUTAC address 162368 2% 28% 8
4 GRAPHLET COUNTING authKW 147157 0% 100% 2
5 NETWORK MOTIF DETECTION ALGORITHM authKW 147157 0% 100% 2
6 REGULATORY NETWORK MOTIFS authKW 147157 0% 100% 2
7 SPECTRAL PLOT authKW 147157 0% 100% 2
8 STRONG WEAK TIE LINK authKW 147157 0% 100% 2
9 FEED FORWARD LOOP authKW 147145 2% 25% 8
10 PROGRAMA BIOL MOL COMPUTAC address 110364 1% 50% 3

Web of Science journal categories


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 Mathematical & Computational Biology 8777 27% 0% 111
2 Biochemical Research Methods 659 14% 0% 58
3 Biotechnology & Applied Microbiology 351 13% 0% 56
4 Biology 339 9% 0% 36
5 Biochemistry & Molecular Biology 302 26% 0% 106
6 Genetics & Heredity 283 12% 0% 50
7 Physics, Mathematical 250 7% 0% 31
8 Physics, Fluids & Plasmas 176 6% 0% 23
9 Multidisciplinary Sciences 121 3% 0% 13
10 Computer Science, Information Systems 87 4% 0% 18

Address terms


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 PROGRAMA GENOM COMPUTAC 162368 2% 28% 8
2 PROGRAMA BIOL MOL COMPUTAC 110364 1% 50% 3
3 PROGRAM COMPUTAT GENOM 94591 1% 21% 6
4 CIFN 90552 1% 31% 4
5 AD T SYST BIOCOMPUTAT GRP 73578 0% 100% 1
6 ANAL GENOM EVOLUT FUNCT 73578 0% 100% 1
7 BIONANOTECNOL NANOCIENCIAS NANOTECNOL 73578 0% 100% 1
8 C ITALIO NACL 73578 0% 100% 1
9 CATALANA RECERCA ESTUDIS AVANCATS COMPLEX 73578 0% 100% 1
10 CHANGZHOU BIOMED INFORMAT TECHNOL 73578 0% 100% 1

Journals


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 BMC SYSTEMS BIOLOGY 20213 5% 1% 21
2 MOLECULAR BIOSYSTEMS 6950 4% 1% 16
3 IET SYSTEMS BIOLOGY 1989 1% 1% 3
4 BMC BIOINFORMATICS 1637 3% 0% 13
5 MOLECULAR SYSTEMS BIOLOGY 1549 1% 1% 4
6 NANO COMMUNICATION NETWORKS 1413 0% 2% 1
7 BIOSYSTEMS 1321 2% 0% 7
8 IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS 1034 1% 0% 4
9 DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION 1011 1% 0% 3
10 PLOS COMPUTATIONAL BIOLOGY 1005 2% 0% 8

Author Key Words


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class		 LCSH search Wikipedia search
1 NETWORK MOTIFS 1177189 12% 33% 48 Search NETWORK+MOTIFS Search NETWORK+MOTIFS
2 SUBGRAPH SAMPLING 165550 1% 75% 3 Search SUBGRAPH+SAMPLING Search SUBGRAPH+SAMPLING
3 GRAPHLET COUNTING 147157 0% 100% 2 Search GRAPHLET+COUNTING Search GRAPHLET+COUNTING
4 NETWORK MOTIF DETECTION ALGORITHM 147157 0% 100% 2 Search NETWORK+MOTIF+DETECTION+ALGORITHM Search NETWORK+MOTIF+DETECTION+ALGORITHM
5 REGULATORY NETWORK MOTIFS 147157 0% 100% 2 Search REGULATORY+NETWORK+MOTIFS Search REGULATORY+NETWORK+MOTIFS
6 SPECTRAL PLOT 147157 0% 100% 2 Search SPECTRAL+PLOT Search SPECTRAL+PLOT
7 STRONG WEAK TIE LINK 147157 0% 100% 2 Search STRONG+WEAK+TIE+LINK Search STRONG+WEAK+TIE+LINK
8 FEED FORWARD LOOP 147145 2% 25% 8 Search FEED+FORWARD+LOOP Search FEED+FORWARD+LOOP
9 ASSOCIATED MATRIX 98103 0% 67% 2 Search ASSOCIATED+MATRIX Search ASSOCIATED+MATRIX
10 NETWORK ORIENTED APPROACH 98103 0% 67% 2 Search NETWORK+ORIENTED+APPROACH Search NETWORK+ORIENTED+APPROACH

Core articles
The table includes core articles in the class. The following variables is taken into account for the relevance score of an article in a cluster c:
(1) Number of references referring to publications in the class.
(2) Share of total number of active references referring to publications in the class.
(3) Age of the article. New articles get higher score than old articles.
(4) Citation rate, normalized to year.


Rank Reference # ref.
in cl.		 Shr. of ref. in
cl.		 Citations
1 TRAN, NTL , MOHAN, S , XU, ZQ , HUANG, CH , (2015) CURRENT INNOVATIONS AND FUTURE CHALLENGES OF NETWORK MOTIF DETECTION.BRIEFINGS IN BIOINFORMATICS. VOL. 16. ISSUE 3. P. 497 -525 25 61% 2
2 ALON, U , (2007) NETWORK MOTIFS: THEORY AND EXPERIMENTAL APPROACHES.NATURE REVIEWS GENETICS. VOL. 8. ISSUE 6. P. 450 -461 24 27% 1152
3 WONG, E , BAUR, B , QUADER, S , HUANG, CH , (2012) BIOLOGICAL NETWORK MOTIF DETECTION: PRINCIPLES AND PRACTICE.BRIEFINGS IN BIOINFORMATICS. VOL. 13. ISSUE 2. P. 202 -215 20 65% 21
4 PRATAP, A , TALIYAN, S , SINGH, TR , (2014) NMDB: NETWORK MOTIF DATABASE ENVISAGED AND EXPLICATED FROM HUMAN DISEASE SPECIFIC PATHWAYS.JOURNAL OF BIOLOGICAL SYSTEMS. VOL. 22. ISSUE 1. P. 89-100 12 92% 0
5 LI, X , STONES, DS , WANG, HD , DENG, HL , LIU, XG , WANG, G , (2012) NETMODE: NETWORK MOTIF DETECTION WITHOUT NAUTY.PLOS ONE. VOL. 7. ISSUE 12. P. - 13 81% 9
6 WANG, JX , HUANG, YN , WU, FX , PAN, Y , (2012) SYMMETRY COMPRESSION METHOD FOR DISCOVERING NETWORK MOTIFS.IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS. VOL. 9. ISSUE 6. P. 1776 -1789 14 74% 2
7 FRETTER, C , MULLER-HANNEMANN, M , HUTT, MT , (2012) SUBGRAPH FLUCTUATIONS IN RANDOM GRAPHS.PHYSICAL REVIEW E. VOL. 85. ISSUE 5. P. - 16 64% 2
8 CAMAS, FM , POYATOS, JF , (2008) WHAT DETERMINES THE ASSEMBLY OF TRANSCRIPTIONAL NETWORK MOTIFS IN ESCHERICHIA COLI?.PLOS ONE. VOL. 3. ISSUE 11. P. - 21 50% 9
9 WIDDER, S , SOLE, R , MACIA, J , (2012) EVOLVABILITY OF FEED-FORWARD LOOP ARCHITECTURE BIASES ITS ABUNDANCE IN TRANSCRIPTION NETWORKS.BMC SYSTEMS BIOLOGY. VOL. 6. ISSUE . P. - 16 59% 3
10 MASOUDI-NEJAD, A , SCHREIBER, F , KASHANI, ZRM , (2012) BUILDING BLOCKS OF BIOLOGICAL NETWORKS: A REVIEW ON MAJOR NETWORK MOTIF DISCOVERY ALGORITHMS.IET SYSTEMS BIOLOGY. VOL. 6. ISSUE 5. P. 164-174 13 68% 17

Classes with closest relation at Level 1


Rank Class id link
1 6275 GENE REGULATORY NETWORK//NETWORK INFERENCE//REVERSE ENGINEERING
2 681 PROTEIN INTERACTION NETWORK//PROTEIN PROTEIN INTERACTION NETWORK//ESSENTIAL PROTEINS
3 5632 BOOLEAN NETWORKS//SEMI TENSOR PRODUCT//BOOLEAN CONTROL NETWORK
4 18561 GENOTYPE PHENOTYPE MAP//ELEMENTARY LANDSCAPES//NEUTRAL NETWORKS
5 8965 CHEMICAL REACTION NETWORKS//MASS ACTION KINETICS//ULTRASENSITIVITY
6 1585 CHEMICAL MASTER EQUATION//STOCHASTIC GENE EXPRESSION//TAU LEAPING
7 25 COMPLEX NETWORKS//SCALE FREE NETWORKS//EPIDEMIC SPREADING
8 29813 NETWORK CONTROLLABILITY//LINEAR STRUCTURED SYSTEMS//STRUCTURE CONTROLLABILITY
9 2111 MOTIF DISCOVERY//TRANSCRIPTION FACTOR BINDING SITE//MOTIF FINDING
10 7960 SYNTHETIC BIOLOGY//ACS SYNTHETIC BIOLOGY//GENETIC CIRCUITS

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