Class information for:
Level 1: EMBL OUTSTN//LECTURE NOTES IN BIOINFORMATICS//PROT INFORMAT OURCE

Basic class information
Class id #P Avg. number of
references		 Database coverage
of references
9683 1131 26.7 73%


Bar chart of Publication_year

Last years might be incomplete

Hierarchy of classes
The table includes all classes above and classes immediately below the current class.


Cluster id Level Cluster label #P
0 4 BIOCHEMISTRY & MOLECULAR BIOLOGY//CELL BIOLOGY//ONCOLOGY 4064930
90 3       MATHEMATICAL & COMPUTATIONAL BIOLOGY//BIOINFORMATICS//BMC BIOINFORMATICS 77178
126 2             MOLECULAR BIOLOGY AND EVOLUTION//BIOINFORMATICS//MATHEMATICAL & COMPUTATIONAL BIOLOGY 23963
9683 1                   EMBL OUTSTN//LECTURE NOTES IN BIOINFORMATICS//PROT INFORMAT OURCE 1131

Terms with highest relevance score


rank Term termType Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 EMBL OUTSTN address 329634 5% 23% 53
2 LECTURE NOTES IN BIOINFORMATICS journal 124919 2% 24% 19
3 PROT INFORMAT OURCE address 104121 1% 43% 9
4 BIOINFORMATICS journal 88737 17% 2% 187
5 J AN INT PROT INFORMAT DATABASE address 80991 0% 100% 3
6 SIMILARITY SCORE DISSECTION authKW 80991 0% 100% 3
7 EUROPEAN BIOINFORMAT address 71941 2% 10% 28
8 INTERPRO authKW 61704 0% 57% 4
9 HIGHER TECH COMP SCI ENGN address 60742 0% 75% 3
10 HLTH SCI TECHNOL ICIR address 60742 0% 75% 3

Web of Science journal categories


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 Mathematical & Computational Biology 26130 28% 0% 316
2 Biochemical Research Methods 8352 29% 0% 327
3 Biotechnology & Applied Microbiology 6283 32% 0% 362
4 Biochemistry & Molecular Biology 2485 40% 0% 456
5 Computer Science, Information Systems 621 7% 0% 75
6 Genetics & Heredity 562 11% 0% 119
7 Computer Science, Interdisciplinary Applications 356 5% 0% 61
8 Computer Science, Theory & Methods 221 5% 0% 51
9 Medical Informatics 219 2% 0% 21
10 Computer Science, Artificial Intelligence 81 3% 0% 32

Address terms


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 EMBL OUTSTN 329634 5% 23% 53
2 PROT INFORMAT OURCE 104121 1% 43% 9
3 J AN INT PROT INFORMAT DATABASE 80991 0% 100% 3
4 EUROPEAN BIOINFORMAT 71941 2% 10% 28
5 HIGHER TECH COMP SCI ENGN 60742 0% 75% 3
6 HLTH SCI TECHNOL ICIR 60742 0% 75% 3
7 BIOMED KNOWLEDGE DISCOVERY TEAMTSURUMI KU 53994 0% 100% 2
8 MEMOREC 53994 0% 100% 2
9 UMR 8023 53994 0% 100% 2
10 GSF FOR UNGSZENTRUM UMWELT GESUNDHEIT 40075 1% 21% 7

Journals


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 LECTURE NOTES IN BIOINFORMATICS 124919 2% 24% 19
2 BIOINFORMATICS 88737 17% 2% 187
3 NUCLEIC ACIDS RESEARCH 49688 24% 1% 269
4 BMC BIOINFORMATICS 14665 6% 1% 64
5 COMPARATIVE AND FUNCTIONAL GENOMICS 11856 1% 3% 13
6 BIOTECHFORUM ( BTF ) 6485 2% 1% 25
7 COMPUTER APPLICATIONS IN THE BIOSCIENCES 5794 1% 2% 14
8 INTERNATIONAL JOURNAL OF DATA MINING AND BIOINFORMATICS 3993 1% 2% 8
9 TRENDS IN GENETICS 2517 1% 1% 16
10 GENE-COMBIS 2248 0% 8% 1

Author Key Words


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class		 LCSH search Wikipedia search
1 SIMILARITY SCORE DISSECTION 80991 0% 100% 3 Search SIMILARITY+SCORE+DISSECTION Search SIMILARITY+SCORE+DISSECTION
2 INTERPRO 61704 0% 57% 4 Search INTERPRO Search INTERPRO
3 PROTEIN SEQUENCE CLUSTERING 60742 0% 75% 3 Search PROTEIN+SEQUENCE+CLUSTERING Search PROTEIN+SEQUENCE+CLUSTERING
4 4D BIOINFORMATICS 53994 0% 100% 2 Search 4D+BIOINFORMATICS Search 4D+BIOINFORMATICS
5 ADRIS 53994 0% 100% 2 Search ADRIS Search ADRIS
6 BLAST SOFTWARE 53994 0% 100% 2 Search BLAST+SOFTWARE Search BLAST+SOFTWARE
7 FOLD CRITICAL SEQUENCE SEGMENT 53994 0% 100% 2 Search FOLD+CRITICAL+SEQUENCE+SEGMENT Search FOLD+CRITICAL+SEQUENCE+SEGMENT
8 FOSSIL SEDIMENT FILTRATION 53994 0% 100% 2 Search FOSSIL+SEDIMENT+FILTRATION Search FOSSIL+SEDIMENT+FILTRATION
9 MOLECULAR BIOLOGY DATABASE 53994 0% 100% 2 Search MOLECULAR+BIOLOGY+DATABASE Search MOLECULAR+BIOLOGY+DATABASE
10 NON GLOBULAR SEQUENCE SEGMENT 53994 0% 100% 2 Search NON+GLOBULAR+SEQUENCE+SEGMENT Search NON+GLOBULAR+SEQUENCE+SEGMENT

Core articles
The table includes core articles in the class. The following variables is taken into account for the relevance score of an article in a cluster c:
(1) Number of references referring to publications in the class.
(2) Share of total number of active references referring to publications in the class.
(3) Age of the article. New articles get higher score than old articles.
(4) Citation rate, normalized to year.


Rank Reference # ref.
in cl.		 Shr. of ref. in
cl.		 Citations
1 BAIROCH, A , APWEILER, R , WU, CH , BARKER, WC , BOECKMANN, B , FERRO, S , GASTEIGER, E , HUANG, HZ , LOPEZ, R , MAGRANE, M , ET AL (2005) THE UNIVERSAL PROTEIN RESOURCE (UNIPROT).NUCLEIC ACIDS RESEARCH. VOL. 33. ISSUE . P. D154-D159 19 73% 674
2 BOECKMANN, B , BAIROCH, A , APWEILER, R , BLATTER, MC , ESTREICHER, A , GASTEIGER, E , MARTIN, MJ , MICHOUD, K , O'DONOVAN, C , PHAN, I , ET AL (2003) THE SWISS-PROT PROTEIN KNOWLEDGEBASE AND ITS SUPPLEMENT TREMBL IN 2003.NUCLEIC ACIDS RESEARCH. VOL. 31. ISSUE 1. P. 365-370 15 65% 1745
3 APWEILER, R , BAIROCH, A , WU, CH , BARKER, WC , BOECKMANN, B , FERRO, S , GASTEIGER, E , HUANG, HZ , LOPEZ, R , MAGRANE, M , ET AL (2004) UNIPROT: THE UNIVERSAL PROTEIN KNOWLEDGEBASE.NUCLEIC ACIDS RESEARCH. VOL. 32. ISSUE . P. D115-D119 15 75% 724
4 SHOOP, E , SILVERSTEIN, KAT , JOHNSON, JE , RETZEL, EF , (2001) METAFAM: A UNIFIED CLASSIFICATION OF PROTEIN FAMILIES. II. SCHEMA AND QUERY CAPABILITIES.BIOINFORMATICS. VOL. 17. ISSUE 3. P. 262-271 24 80% 8
5 MULDER, NJ , APWEILER, R , (2002) TOOLS AND RESOURCES FOR IDENTIFYING PROTEIN FAMILIES, DOMAINS AND MOTIFS.GENOME BIOLOGY. VOL. 3. ISSUE 1. P. - 23 79% 5
6 KRAUSE, A , (2006) LARGE SCALE PROTEIN SEQUENCE CLUSTERING - NOT SOLVED BUT SOLVABLE.CURRENT BIOINFORMATICS. VOL. 1. ISSUE 2. P. 247-254 26 60% 2
7 ZDOBNOV, EM , APWEILER, R , (2001) INTERPROSCAN - AN INTEGRATION PLATFORM FOR THE SIGNATURE-RECOGNITION METHODS IN INTERPRO.BIOINFORMATICS. VOL. 17. ISSUE 9. P. 847-848 8 89% 1416
8 MURVAI, J , VLAHOVICEK, K , BARTA, E , CATALETTO, B , PONGOR, S , (2000) THE SBASE PROTEIN DOMAIN LIBRARY, RELEASE 7.0: A COLLECTION OF ANNOTATED PROTEIN SEQUENCE SEGMENTS.NUCLEIC ACIDS RESEARCH. VOL. 28. ISSUE 1. P. 260 -262 20 83% 11
9 CAMON, E , MAGRANE, M , BARRELL, D , BINNS, D , FLEISCHMANN, W , KERSEY, P , MULDER, N , OINN, T , MASLEN, J , COX, A , ET AL (2003) THE GENE ONTOLOGY ANNOTATION (GOA) PROJECT: IMPLEMENTATION OF GO IN SWISS-PROT, TREMBL, AND INTERPRO.GENOME RESEARCH. VOL. 13. ISSUE 4. P. 662-672 17 65% 217
10 YONA, G , LINIAL, N , LINIAL, M , (2000) PROTOMAP: AUTOMATIC CLASSIFICATION OF PROTEIN SEQUENCES AND HIERARCHY OF PROTEIN FAMILIES.NUCLEIC ACIDS RESEARCH. VOL. 28. ISSUE 1. P. 49-55 16 84% 97

Classes with closest relation at Level 1


Rank Class id link
1 18864 DATABASE LIFE SCI//DDBJ//EMTRAIN
2 20039 ORTHOLOGY//BIDIRECTIONAL BEST HIT//GENOME FUNCTIONAL PREDICTION
3 24117 EVOLUTIONARY BIOINFORMAT//FOLD SUPERFAMILY//EVOLUTION OF DOMAIN ARCHITECTURE
4 2338 MULTIPLE SEQUENCE ALIGNMENT//SEQUENCE ALIGNMENT//COMPUTER APPLICATIONS IN THE BIOSCIENCES
5 11342 GENE PREDICTION//GENE FINDING//GENE RECOGNITION
6 4994 PROTEIN STRUCTURE COMPARISON//PROTEIN STRUCTURE ALIGNMENT//STRUCTURE COMPARISON
7 9196 PROTEIN FUNCTION PREDICTION//COMPLEX SCI SOFTWARE//PHYLOGENETIC MOTIFS
8 37470 SEQUENCE UNIQUENESS//BIOCHEM MOL BIOL ERNESTO QUAGLIARIELLO//SIMILARITY LEVEL
9 35524 FUNCTIONAL DATA MODEL//KINGS COMP SCI//AV P HEGER
10 31716 LIMS//BREEDING GENET OURCES//ATTRIBUTE MATCHING ALGORITHM

Go to start page