Class information for:
Level 1: CONSERVED NON CODING ELEMENTS//IROQUOIS//ENERGY ENVIRONM BIOL COMP

Basic class information
Class id #P Avg. number of
references		 Database coverage
of references
19282 513 46.4 90%


Bar chart of Publication_year

Last years might be incomplete

Hierarchy of classes
The table includes all classes above and classes immediately below the current class.


Cluster id Level Cluster label #P
0 4 BIOCHEMISTRY & MOLECULAR BIOLOGY//CELL BIOLOGY//ONCOLOGY 4064930
90 3       MATHEMATICAL & COMPUTATIONAL BIOLOGY//BIOINFORMATICS//BMC BIOINFORMATICS 77178
126 2             MOLECULAR BIOLOGY AND EVOLUTION//BIOINFORMATICS//MATHEMATICAL & COMPUTATIONAL BIOLOGY 23963
19282 1                   CONSERVED NON CODING ELEMENTS//IROQUOIS//ENERGY ENVIRONM BIOL COMP 513

Terms with highest relevance score


rank Term termType Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 CONSERVED NON CODING ELEMENTS authKW 535686 3% 60% 15
2 IROQUOIS authKW 188602 3% 21% 15
3 ENERGY ENVIRONM BIOL COMP address 178566 1% 100% 3
4 SARS MARINE MOL BIOL address 145765 3% 19% 13
5 ULTRACONSERVED ELEMENTS authKW 137738 2% 26% 9
6 GENOMIC REGULATORY BLOCKS authKW 119044 0% 100% 2
7 ULTRACONSERVED ELEMENTS UCES authKW 119044 0% 100% 2
8 ZEBRAFISH TRANSGENESIS authKW 119044 0% 100% 2
9 CNE authKW 105812 1% 44% 4
10 ENHANCER EVOLUTION authKW 86572 1% 36% 4

Web of Science journal categories


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 Genetics & Heredity 10221 58% 0% 298
2 Biotechnology & Applied Microbiology 3498 35% 0% 181
3 Developmental Biology 1600 12% 0% 59
4 Evolutionary Biology 1276 11% 0% 55
5 Biochemistry & Molecular Biology 1079 40% 0% 203
6 Mathematical & Computational Biology 867 8% 0% 40
7 Biochemical Research Methods 291 9% 0% 45
8 Biology 66 4% 0% 20
9 Cell Biology 60 8% 0% 39
10 Anatomy & Morphology 38 1% 0% 7

Address terms


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 ENERGY ENVIRONM BIOL COMP 178566 1% 100% 3
2 SARS MARINE MOL BIOL 145765 3% 19% 13
3 PROGRAM COMPARAT EVOLUTIONARY GENOM 73252 1% 31% 4
4 BIOL DESAROLLO 59522 0% 100% 1
5 BIOL MOL SEVERO OATOA 59522 0% 100% 1
6 CANC AGINGINSERMU1081 59522 0% 100% 1
7 CSIC UPO JA 59522 0% 100% 1
8 DEV BIOLCHUOU KU 59522 0% 100% 1
9 DEV NEUROBIOL GENET 59522 0% 100% 1
10 DEV TRANSCRIPT REGULAT 59522 0% 100% 1

Journals


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 BIOTECHFORUM ( BTF ) 34986 8% 2% 39
2 GENOME RESEARCH 11058 3% 1% 16
3 GENOME BIOLOGY AND EVOLUTION 9905 3% 1% 15
4 MOLECULAR BIOLOGY AND EVOLUTION 3830 4% 0% 19
5 GENOME BIOLOGY 3353 3% 0% 13
6 TRENDS IN GENETICS 3137 2% 0% 12
7 ANNUAL REVIEW OF GENOMICS AND HUMAN GENETICS 2959 1% 1% 4
8 GENOMICS 2854 4% 0% 20
9 BMC GENOMICS 2462 4% 0% 20
10 BIOINFORMATICS 1990 4% 0% 19

Author Key Words


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class		 LCSH search Wikipedia search
1 CONSERVED NON CODING ELEMENTS 535686 3% 60% 15 Search CONSERVED+NON+CODING+ELEMENTS Search CONSERVED+NON+CODING+ELEMENTS
2 IROQUOIS 188602 3% 21% 15 Search IROQUOIS Search IROQUOIS
3 ULTRACONSERVED ELEMENTS 137738 2% 26% 9 Search ULTRACONSERVED+ELEMENTS Search ULTRACONSERVED+ELEMENTS
4 GENOMIC REGULATORY BLOCKS 119044 0% 100% 2 Search GENOMIC+REGULATORY+BLOCKS Search GENOMIC+REGULATORY+BLOCKS
5 ULTRACONSERVED ELEMENTS UCES 119044 0% 100% 2 Search ULTRACONSERVED+ELEMENTS+UCES Search ULTRACONSERVED+ELEMENTS+UCES
6 ZEBRAFISH TRANSGENESIS 119044 0% 100% 2 Search ZEBRAFISH+TRANSGENESIS Search ZEBRAFISH+TRANSGENESIS
7 CNE 105812 1% 44% 4 Search CNE Search CNE
8 ENHANCER EVOLUTION 86572 1% 36% 4 Search ENHANCER+EVOLUTION Search ENHANCER+EVOLUTION
9 IRX GENES 79361 0% 67% 2 Search IRX+GENES Search IRX+GENES
10 4 FOLD DEGENERATE SITES 59522 0% 100% 1 Search 4+FOLD+DEGENERATE+SITES Search 4+FOLD+DEGENERATE+SITES

Core articles
The table includes core articles in the class. The following variables is taken into account for the relevance score of an article in a cluster c:
(1) Number of references referring to publications in the class.
(2) Share of total number of active references referring to publications in the class.
(3) Age of the article. New articles get higher score than old articles.
(4) Citation rate, normalized to year.


Rank Reference # ref.
in cl.		 Shr. of ref. in
cl.		 Citations
1 HARMSTON, N , BARESIC, A , LENHARD, B , (2013) THE MYSTERY OF EXTREME NON-CODING CONSERVATION.PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES. VOL. 368. ISSUE 1632. P. - 66 57% 14
2 SAKURABA, Y , KIMURA, T , MASUYA, H , NOGUCHI, H , SEZUTSU, H , TAKAHASI, KR , TOYODA, A , FUKUMURA, R , MURATA, T , SAKAKI, Y , ET AL (2008) IDENTIFICATION AND CHARACTERIZATION OF NEW LONG CONSERVED NONCODING SEQUENCES IN VERTEBRATES.MAMMALIAN GENOME. VOL. 19. ISSUE 10-12. P. 703-712 34 74% 18
3 POLYCHRONOPOULOS, D , SELLIS, D , ALMIRANTIS, Y , (2014) CONSERVED NONCODING ELEMENTS FOLLOW POWER-LAW-LIKE DISTRIBUTIONS IN SEVERAL GENOMES AS A RESULT OF GENOME DYNAMICS.PLOS ONE. VOL. 9. ISSUE 5. P. - 39 51% 1
4 SIEPEL, A , BEJERANO, G , PEDERSEN, JS , HINRICHS, AS , HOU, MM , ROSENBLOOM, K , CLAWSON, H , SPIETH, J , HILLIER, LW , RICHARDS, S , ET AL (2005) EVOLUTIONARILY CONSERVED ELEMENTS IN VERTEBRATE, INSECT, WORM, AND YEAST GENOMES.GENOME RESEARCH. VOL. 15. ISSUE 8. P. 1034 -1050 25 32% 1514
5 WOOLFE, A , ELGAR, G , (2008) ORGANIZATION OF CONSERVED ELEMENTS NEAR KEY DEVELOPMENTAL REGULATORS IN VERTEBRATE GENOMES.LONG-RANGE CONTROL OF GENE EXPRESSION. VOL. 61. ISSUE . P. 307-338 38 45% 22
6 VENKATESH, B , MAESO, I , RAVI, V , IRIMIA, M , TENA, JJ , GONZALEZ-PEREZ, E , TRAN, D , CAMPUZANO, S , GOMEZ-SKARMETA, JL , GARCIA-FERNANDEZ, J , (2012) AN ANCIENT GENOMIC REGULATORY BLOCK CONSERVED ACROSS BILATERIANS AND ITS DISMANTLING IN TETRAPODS BY RETROGENE REPLACEMENT.GENOME RESEARCH. VOL. 22. ISSUE 4. P. 642 -655 34 46% 6
7 POLLARD, KS , HUBISZ, MJ , ROSENBLOOM, KR , SIEPEL, A , (2010) DETECTION OF NONNEUTRAL SUBSTITUTION RATES ON MAMMALIAN PHYLOGENIES.GENOME RESEARCH. VOL. 20. ISSUE 1. P. 110-121 21 38% 415
8 DIMITRIEVA, S , BUCHER, P , (2013) UCNEBASE-A DATABASE OF ULTRACONSERVED NON-CODING ELEMENTS AND GENOMIC REGULATORY BLOCKS.NUCLEIC ACIDS RESEARCH. VOL. 41. ISSUE D1. P. D101 -D109 17 74% 15
9 ROYO, JL , HIDALGO, C , RONCERO, Y , SEDA, MA , AKALIN, A , LENHARD, B , CASARES, F , GOMEZ-SKARMETA, JL , (2011) DISSECTING THE TRANSCRIPTIONAL REGULATORY PROPERTIES OF HUMAN CHROMOSOME 16 HIGHLY CONSERVED NON-CODING REGIONS.PLOS ONE. VOL. 6. ISSUE 9. P. - 24 57% 5
10 RITTER, DI , LI, QA , KOSTKA, D , POLLARD, KS , GUO, S , CHUANG, JH , (2010) THE IMPORTANCE OF BEING CIS: EVOLUTION OF ORTHOLOGOUS FISH AND MAMMALIAN ENHANCER ACTIVITY.MOLECULAR BIOLOGY AND EVOLUTION. VOL. 27. ISSUE 10. P. 2322 -2332 23 58% 21

Classes with closest relation at Level 1


Rank Class id link
1 4702 CHIP SEQ//ENHANCER//PEAK CALLING
2 2111 MOTIF DISCOVERY//TRANSCRIPTION FACTOR BINDING SITE//MOTIF FINDING
3 19783 EXPRESSION EVOLUTION//TRANS REGULATION//CIS REGULATORY DIVERGENCE
4 13045 ISOCHORES//EVOLUZ MOL//MALE MUTATION BIAS
5 8300 WHOLE GENOME DUPLICATION//GENOME DUPLICATION//GENE DUPLICATION
6 36483 GENOMIC DATA VISUALIZATION//ALTERNATE ASSEMBLIES OF COW GENOMES//BAC FISH MAPPING
7 31504 NEMO LIKE KINASE//NLK//UNIT NERVOUS DEV SYST
8 36950 NPAS4//NPAS3//LE PAS
9 2338 MULTIPLE SEQUENCE ALIGNMENT//SEQUENCE ALIGNMENT//COMPUTER APPLICATIONS IN THE BIOSCIENCES
10 11342 GENE PREDICTION//GENE FINDING//GENE RECOGNITION

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