Class information for:
Level 1: GENE PREDICTION//GENE FINDING//GENE RECOGNITION

Basic class information
Class id #P Avg. number of
references		 Database coverage
of references
11342 990 30.8 76%


Bar chart of Publication_year

Last years might be incomplete

Hierarchy of classes
The table includes all classes above and classes immediately below the current class.


Cluster id Level Cluster label #P
0 4 BIOCHEMISTRY & MOLECULAR BIOLOGY//CELL BIOLOGY//ONCOLOGY 4064930
90 3       MATHEMATICAL & COMPUTATIONAL BIOLOGY//BIOINFORMATICS//BMC BIOINFORMATICS 77178
126 2             MOLECULAR BIOLOGY AND EVOLUTION//BIOINFORMATICS//MATHEMATICAL & COMPUTATIONAL BIOLOGY 23963
11342 1                   GENE PREDICTION//GENE FINDING//GENE RECOGNITION 990

Terms with highest relevance score


rank Term termType Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 GENE PREDICTION authKW 468962 4% 36% 42
2 GENE FINDING authKW 192148 2% 35% 18
3 GENE RECOGNITION authKW 166541 1% 60% 9
4 SPLICE SITE PREDICTION authKW 140986 1% 57% 8
5 SPLICE SITE authKW 113915 2% 17% 22
6 RE ANNOTATION authKW 96378 1% 63% 5
7 P1 GENOMIC LIBRARY authKW 92527 0% 100% 3
8 SHANDONG PROV BIOPHYS FUNCT MACROMOL address 92527 0% 100% 3
9 EXON PREDICTION authKW 85403 1% 46% 6
10 SPLICED ALIGNMENT authKW 69394 0% 75% 3

Web of Science journal categories


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 Mathematical & Computational Biology 26593 30% 0% 298
2 Biotechnology & Applied Microbiology 9923 42% 0% 420
3 Biochemical Research Methods 7036 28% 0% 281
4 Genetics & Heredity 3197 24% 0% 241
5 Biochemistry & Molecular Biology 1461 34% 0% 337
6 Computer Science, Interdisciplinary Applications 792 8% 0% 81
7 Biology 215 5% 0% 48
8 Computer Science, Artificial Intelligence 142 4% 0% 37
9 Statistics & Probability 95 3% 0% 29
10 Computer Science, Information Systems 53 3% 0% 25

Address terms


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 SHANDONG PROV BIOPHYS FUNCT MACROMOL 92527 0% 100% 3
2 659 61685 0% 100% 2
3 NUTR DOENCAS METAB 61685 0% 100% 2
4 INRA FRANCE 46260 0% 50% 3
5 ASSOCIE INRA FRANCE 41122 0% 67% 2
6 AG PRAKT INFORMAT 30842 0% 100% 1
7 ANAL EXP SAO GENICA 30842 0% 100% 1
8 ATTAT 30842 0% 100% 1
9 BIO COMP IL 30842 0% 100% 1
10 BIOINFORMAT ERA7 30842 0% 100% 1

Journals


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 BIOINFORMATICS 45967 13% 1% 126
2 BIOTECHFORUM ( BTF ) 41466 6% 2% 59
3 BMC BIOINFORMATICS 20077 7% 1% 70
4 COMPUTER APPLICATIONS IN THE BIOSCIENCES 12212 2% 2% 19
5 JOURNAL OF COMPUTATIONAL BIOLOGY 11363 2% 2% 24
6 NUCLEIC ACIDS RESEARCH 9724 11% 0% 112
7 GENOME BIOLOGY 6426 3% 1% 25
8 CURRENT BIOINFORMATICS 4450 1% 2% 8
9 DNA RESEARCH 3910 1% 1% 9
10 COMPUTERS & CHEMISTRY 3794 1% 1% 11

Author Key Words


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class		 LCSH search Wikipedia search
1 GENE PREDICTION 468962 4% 36% 42 Search GENE+PREDICTION Search GENE+PREDICTION
2 GENE FINDING 192148 2% 35% 18 Search GENE+FINDING Search GENE+FINDING
3 GENE RECOGNITION 166541 1% 60% 9 Search GENE+RECOGNITION Search GENE+RECOGNITION
4 SPLICE SITE PREDICTION 140986 1% 57% 8 Search SPLICE+SITE+PREDICTION Search SPLICE+SITE+PREDICTION
5 SPLICE SITE 113915 2% 17% 22 Search SPLICE+SITE Search SPLICE+SITE
6 RE ANNOTATION 96378 1% 63% 5 Search RE+ANNOTATION Search RE+ANNOTATION
7 P1 GENOMIC LIBRARY 92527 0% 100% 3 Search P1+GENOMIC+LIBRARY Search P1+GENOMIC+LIBRARY
8 EXON PREDICTION 85403 1% 46% 6 Search EXON+PREDICTION Search EXON+PREDICTION
9 SPLICED ALIGNMENT 69394 0% 75% 3 Search SPLICED+ALIGNMENT Search SPLICED+ALIGNMENT
10 ARABIDOPSIS THALIANA CHROMOSOME 3 61685 0% 100% 2 Search ARABIDOPSIS+THALIANA+CHROMOSOME+3 Search ARABIDOPSIS+THALIANA+CHROMOSOME+3

Core articles
The table includes core articles in the class. The following variables is taken into account for the relevance score of an article in a cluster c:
(1) Number of references referring to publications in the class.
(2) Share of total number of active references referring to publications in the class.
(3) Age of the article. New articles get higher score than old articles.
(4) Citation rate, normalized to year.


Rank Reference # ref.
in cl.		 Shr. of ref. in
cl.		 Citations
1 MATHE, C , SAGOT, MF , SCHIEX, T , ROUZE, P , (2002) CURRENT METHODS OF GENE PREDICTION, THEIR STRENGTHS AND WEAKNESSES.NUCLEIC ACIDS RESEARCH. VOL. 30. ISSUE 19. P. 4103 -4117 82 62% 215
2 BRENT, MR , (2008) STEADY PROGRESS AND RECENT BREAKTHROUGHS IN THE ACCURACY OF AUTOMATED GENOME ANNOTATION.NATURE REVIEWS GENETICS. VOL. 9. ISSUE 1. P. 62 -73 35 69% 77
3 HAAS, BJ , SALZBERG, SL , ZHU, W , PERTEA, M , ALLEN, JE , ORVIS, J , WHITE, O , BUELL, CR , WORTMAN, JR , (2008) AUTOMATED EUKARYOTIC GENE STRUCTURE ANNOTATION USING EVIDENCEMODELER AND THE PROGRAM TO ASSEMBLE SPLICED ALIGNMENTS.GENOME BIOLOGY. VOL. 9. ISSUE 1. P. - 27 77% 160
4 LIU, Q , MACKEY, AJ , ROOS, DS , PEREIRA, FCN , (2008) EVIGAN: A HIDDEN VARIABLE MODEL FOR INTEGRATING GENE EVIDENCE FOR EUKARYOTIC GENE PREDICTION.BIOINFORMATICS. VOL. 24. ISSUE 5. P. 597 -605 28 93% 17
5 GOEL, N , SINGH, S , ASERI, TC , (2013) A COMPARATIVE ANALYSIS OF SOFT COMPUTING TECHNIQUES FOR GENE PREDICTION.ANALYTICAL BIOCHEMISTRY. VOL. 438. ISSUE 1. P. 14-21 28 80% 4
6 MAJI, S , GARG, D , (2013) PROGRESS IN GENE PREDICTION: PRINCIPLES AND CHALLENGES.CURRENT BIOINFORMATICS. VOL. 8. ISSUE 2. P. 226 -243 41 55% 3
7 LOMSADZE, A , TER-HOVHANNISYAN, V , CHERNOFF, YO , BORODOVSKY, M , (2005) GENE IDENTIFICATION IN NOVEL EUKARYOTIC GENOMES BY SELF-TRAINING ALGORITHM.NUCLEIC ACIDS RESEARCH. VOL. 33. ISSUE 20. P. 6494-6506 28 78% 173
8 GOODSWEN, SJ , KENNEDY, PJ , ELLIS, JT , (2012) EVALUATING HIGH-THROUGHPUT AB INITIO GENE FINDERS TO DISCOVER PROTEINS ENCODED IN EUKARYOTIC PATHOGEN GENOMES MISSED BY LABORATORY TECHNIQUES.PLOS ONE. VOL. 7. ISSUE 11. P. - 33 66% 6
9 CHURBANOV, A , (2006) CONTEMPORARY PROGRESS IN GENE STRUCTURE PREDICTION.CURRENT GENOMICS. VOL. 7. ISSUE 5. P. 283-292 38 67% 0
10 FOISSAC, S , GOUZY, J , ROMBAUTS, S , MATHE, C , AMSELEM, J , STERCK, L , VAN DE PEER, Y , ROUZE, P , SCHIEX, T , (2008) GENOME ANNOTATION IN PLANTS AND FUNGI: EUGENE AS A MODEL PLATFORM.CURRENT BIOINFORMATICS. VOL. 3. ISSUE 2. P. 87 -97 30 75% 15

Classes with closest relation at Level 1


Rank Class id link
1 35565 MKIAA//ATAD3//ATAD3A
2 15262 SMART CDNA LIBRARY//GENOME EXPLORAT GRPTSURUMI KU//EXPRESSED SEQUENCE TAGS
3 9683 EMBL OUTSTN//LECTURE NOTES IN BIOINFORMATICS//PROT INFORMAT OURCE
4 11165 LATENT PERIODICITY//TRIPLET PERIODICITY//LONG RANGE CORRELATION
5 2338 MULTIPLE SEQUENCE ALIGNMENT//SEQUENCE ALIGNMENT//COMPUTER APPLICATIONS IN THE BIOSCIENCES
6 28425 PROCESSED PSEUDOGENES//CYP4Z2P//DUPLICATED PSEUDOGENES
7 18864 DATABASE LIFE SCI//DDBJ//EMTRAIN
8 36366 BLOOMINGTON DROSOPHILA STOCK//BEIJING SPREADING WING//EDGP
9 19074 NATURAL ANTISENSE TRANSCRIPT//WRAP53//OVERLAPPING GENES
10 15359 STANDARDS IN GENOMIC SCIENCES//BIOL DATA MANAGEMENT TECHNOL//GEBA

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