Class information for:
Level 1: EXPRESSION EVOLUTION//TRANS REGULATION//CIS REGULATORY DIVERGENCE

Basic class information
Class id #P Avg. number of
references		 Database coverage
of references
19783 489 51.2 87%


Bar chart of Publication_year

Last years might be incomplete

Hierarchy of classes
The table includes all classes above and classes immediately below the current class.


Cluster id Level Cluster label #P
0 4 BIOCHEMISTRY & MOLECULAR BIOLOGY//CELL BIOLOGY//ONCOLOGY 4064930
90 3       MATHEMATICAL & COMPUTATIONAL BIOLOGY//BIOINFORMATICS//BMC BIOINFORMATICS 77178
126 2             MOLECULAR BIOLOGY AND EVOLUTION//BIOINFORMATICS//MATHEMATICAL & COMPUTATIONAL BIOLOGY 23963
19783 1                   EXPRESSION EVOLUTION//TRANS REGULATION//CIS REGULATORY DIVERGENCE 489

Terms with highest relevance score


rank Term termType Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 EXPRESSION EVOLUTION authKW 339967 1% 78% 7
2 TRANS REGULATION authKW 190294 2% 38% 8
3 CIS REGULATORY DIVERGENCE authKW 124887 0% 100% 2
4 EXPRESSION CONSERVATION authKW 124887 0% 100% 2
5 RHESUS MACAQUE GENOME ARRAY authKW 124887 0% 100% 2
6 WE INFORMAT BIOINFORMAT address 124887 0% 100% 2
7 CIS REGULATION authKW 92694 3% 11% 14
8 EVOLUTION OF GENE EXPRESSION authKW 90822 1% 36% 4
9 KRAB ZINC FINGER GENES authKW 83257 0% 67% 2
10 EXPRESSION DIVERGENCE authKW 70239 1% 19% 6

Web of Science journal categories


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 Genetics & Heredity 10530 60% 0% 295
2 Evolutionary Biology 4416 20% 0% 98
3 Biotechnology & Applied Microbiology 1087 21% 0% 102
4 Mathematical & Computational Biology 650 7% 0% 34
5 Biochemistry & Molecular Biology 618 32% 0% 156
6 Biochemical Research Methods 185 7% 0% 36
7 Biology 184 6% 0% 30
8 Ecology 145 7% 0% 35
9 Cell Biology 40 7% 0% 33
10 Developmental Biology 34 2% 0% 10

Address terms


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 WE INFORMAT BIOINFORMAT 124887 0% 100% 2
2 ARABIDOPSIS STOCK 62443 0% 100% 1
3 CHAIR SYSTEMAT ZOOL 62443 0% 100% 1
4 EPHEUMR 5175 62443 0% 100% 1
5 EQUIPE RECH 7226 62443 0% 100% 1
6 EUROPEAN PUBL HEATH GEN 62443 0% 100% 1
7 GODDARD S 203 62443 0% 100% 1
8 GRP ANS IMMUNOREGULAT 5 62443 0% 100% 1
9 HLTH SERV DEV BIOSTAT UNIT 62443 0% 100% 1
10 IKC 62443 0% 100% 1

Journals


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 MOLECULAR BIOLOGY AND EVOLUTION 13701 7% 1% 35
2 GENOME RESEARCH 10196 3% 1% 15
3 GENOME BIOLOGY AND EVOLUTION 9052 3% 1% 14
4 MOLECULAR SYSTEMS BIOLOGY 5270 2% 1% 8
5 BMC GENOMICS 4729 6% 0% 27
6 NATURE REVIEWS GENETICS 3362 2% 1% 8
7 PLOS GENETICS 3337 4% 0% 18
8 GENOME BIOLOGY 2997 2% 0% 12
9 GENETICS 2560 5% 0% 23
10 BIOTECHFORUM ( BTF ) 1941 2% 0% 9

Author Key Words


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class		 LCSH search Wikipedia search
1 EXPRESSION EVOLUTION 339967 1% 78% 7 Search EXPRESSION+EVOLUTION Search EXPRESSION+EVOLUTION
2 TRANS REGULATION 190294 2% 38% 8 Search TRANS+REGULATION Search TRANS+REGULATION
3 CIS REGULATORY DIVERGENCE 124887 0% 100% 2 Search CIS+REGULATORY+DIVERGENCE Search CIS+REGULATORY+DIVERGENCE
4 EXPRESSION CONSERVATION 124887 0% 100% 2 Search EXPRESSION+CONSERVATION Search EXPRESSION+CONSERVATION
5 RHESUS MACAQUE GENOME ARRAY 124887 0% 100% 2 Search RHESUS+MACAQUE+GENOME+ARRAY Search RHESUS+MACAQUE+GENOME+ARRAY
6 CIS REGULATION 92694 3% 11% 14 Search CIS+REGULATION Search CIS+REGULATION
7 EVOLUTION OF GENE EXPRESSION 90822 1% 36% 4 Search EVOLUTION+OF+GENE+EXPRESSION Search EVOLUTION+OF+GENE+EXPRESSION
8 KRAB ZINC FINGER GENES 83257 0% 67% 2 Search KRAB+ZINC+FINGER+GENES Search KRAB+ZINC+FINGER+GENES
9 EXPRESSION DIVERGENCE 70239 1% 19% 6 Search EXPRESSION+DIVERGENCE Search EXPRESSION+DIVERGENCE
10 ACUTE ALLERGIC INFLAMMATION 62443 0% 100% 1 Search ACUTE+ALLERGIC+INFLAMMATION Search ACUTE+ALLERGIC+INFLAMMATION

Core articles
The table includes core articles in the class. The following variables is taken into account for the relevance score of an article in a cluster c:
(1) Number of references referring to publications in the class.
(2) Share of total number of active references referring to publications in the class.
(3) Age of the article. New articles get higher score than old articles.
(4) Citation rate, normalized to year.


Rank Reference # ref.
in cl.		 Shr. of ref. in
cl.		 Citations
1 COOLON, JD , MCMANUS, CJ , STEVENSON, KR , GRAVELEY, BR , WITTKOPP, PJ , (2014) TEMPO AND MODE OF REGULATORY EVOLUTION IN DROSOPHILA.GENOME RESEARCH. VOL. 24. ISSUE 5. P. 797 -808 39 50% 20
2 MACK, KL , CAMPBELL, P , NACHMAN, MW , (2016) GENE REGULATION AND SPECIATION IN HOUSE MICE.GENOME RESEARCH. VOL. 26. ISSUE 4. P. 451 -461 27 44% 4
3 THOMPSON, DA , CUBILLOS, FA , (2017) NATURAL GENE EXPRESSION VARIATION STUDIES IN YEAST.YEAST. VOL. 34. ISSUE 1. P. 3 -17 44 31% 0
4 SOMEL, M , ROHLFS, R , LIU, XL , (2014) TRANSCRIPTOMIC INSIGHTS INTO HUMAN BRAIN EVOLUTION: ACCELERATION, NEUTRALITY, HETEROCHRONY.CURRENT OPINION IN GENETICS & DEVELOPMENT. VOL. 29. ISSUE . P. 110 -119 36 34% 6
5 MCMANUS, CJ , COOLON, JD , DUFF, MO , EIPPER-MAINS, J , GRAVELEY, BR , WITTKOPP, PJ , (2010) REGULATORY DIVERGENCE IN DROSOPHILA REVEALED BY MRNA-SEQ.GENOME RESEARCH. VOL. 20. ISSUE 6. P. 816 -825 21 46% 121
6 TIROSH, I , BARKAI, N , (2011) INFERRING REGULATORY MECHANISMS FROM PATTERNS OF EVOLUTIONARY DIVERGENCE.MOLECULAR SYSTEMS BIOLOGY. VOL. 7. ISSUE . P. - 33 35% 16
7 STAUBACH, F , TESCHKE, M , VOOLSTRA, CR , WOLF, JBW , TAUTZ, D , (2010) A TEST OF THE NEUTRAL MODEL OF EXPRESSION CHANGE IN NATURAL POPULATIONS OF HOUSE MOUSE SUBSPECIES.EVOLUTION. VOL. 64. ISSUE 2. P. 549-560 22 55% 5
8 SUVOROV, A , NOLTE, V , PANDEY, RV , FRANSSEN, SU , FUTSCHIK, A , SCHLOTTERER, C , (2013) INTRA-SPECIFIC REGULATORY VARIATION IN DROSOPHILA PSEUDOOBSCURA.PLOS ONE. VOL. 8. ISSUE 12. P. - 18 58% 8
9 SCHAEFKE, B , EMERSON, JJ , WANG, TY , LU, MYJ , HSIEH, LC , LI, WH , (2013) INHERITANCE OF GENE EXPRESSION LEVEL AND SELECTIVE CONSTRAINTS ON TRANS- AND CIS-REGULATORY CHANGES IN YEAST.MOLECULAR BIOLOGY AND EVOLUTION. VOL. 30. ISSUE 9. P. 2121 -2133 21 45% 21
10 WARNEFORS, M , EYRE-WALKER, A , (2012) A SELECTION INDEX FOR GENE EXPRESSION EVOLUTION AND ITS APPLICATION TO THE DIVERGENCE BETWEEN HUMANS AND CHIMPANZEES.PLOS ONE. VOL. 7. ISSUE 4. P. - 25 41% 6

Classes with closest relation at Level 1


Rank Class id link
1 8478 EQTL//GENETICAL GENOMICS//EQTL MAPPING
2 16263 INTRALOCUS SEXUAL CONFLICT//SEX BIASED GENE EXPRESSION//SEXUAL ANTAGONISM
3 19282 CONSERVED NON CODING ELEMENTS//IROQUOIS//ENERGY ENVIRONM BIOL COMP
4 8300 WHOLE GENOME DUPLICATION//GENOME DUPLICATION//GENE DUPLICATION
5 14114 MEIOTIC DRIVE//HYBRID INVIABILITY//HYBRID STERILITY
6 10256 CODON MODELS//POSITIVE SELECTION//MOLECULAR BIOLOGY AND EVOLUTION
7 16388 BCPH UNIT MOL PHYSIOL//WING PATTERN//NYMPHALID GROUNDPLAN
8 7981 SACCHAROMYCES SENSU STRICTO//GENET GENOM MICROBIOL//WINE YEAST
9 18561 GENOTYPE PHENOTYPE MAP//ELEMENTARY LANDSCAPES//NEUTRAL NETWORKS
10 2111 MOTIF DISCOVERY//TRANSCRIPTION FACTOR BINDING SITE//MOTIF FINDING

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