Class information for:
Level 1: CHIP SEQ//ENHANCER//PEAK CALLING

Basic class information
Class id #P Avg. number of
references		 Database coverage
of references
4702 1741 50.6 91%


Bar chart of Publication_year

Last years might be incomplete

Hierarchy of classes
The table includes all classes above and classes immediately below the current class.


Cluster id Level Cluster label #P
0 4 BIOCHEMISTRY & MOLECULAR BIOLOGY//CELL BIOLOGY//ONCOLOGY 4064930
71 3       GENETICS & HEREDITY//CHROMATIN//CELL BIOLOGY 83302
343 2             EZH2//CHROMATIN//POLYCOMB 17754
4702 1                   CHIP SEQ//ENHANCER//PEAK CALLING 1741

Terms with highest relevance score


rank Term termType Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 CHIP SEQ authKW 451430 6% 25% 103
2 ENHANCER authKW 108902 6% 6% 98
3 PEAK CALLING authKW 95477 0% 78% 7
4 VERTEBRATE GENOM GRP address 87686 0% 100% 5
5 GENOME RESEARCH journal 85669 5% 6% 82
6 ENHANCER RNA authKW 73070 0% 83% 5
7 MASSIVELY PARALLEL REPORTER ASSAYS authKW 70149 0% 100% 4
8 PROGRAM COMPUTAT BIOL BIOINFORMAT address 59360 2% 9% 37
9 DNASE SEQ authKW 57389 0% 55% 6
10 CHROMATIN LANDSCAPE authKW 56118 0% 80% 4

Web of Science journal categories


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 Mathematical & Computational Biology 14767 17% 0% 297
2 Genetics & Heredity 12490 35% 0% 618
3 Biotechnology & Applied Microbiology 10523 33% 0% 580
4 Biochemical Research Methods 7754 23% 0% 395
5 Biochemistry & Molecular Biology 4280 42% 0% 737
6 Cell Biology 3104 23% 0% 397
7 Developmental Biology 200 3% 0% 44
8 Multidisciplinary Sciences 120 2% 0% 29
9 Biology 85 3% 0% 47
10 Cell & Tissue Engineering 60 1% 0% 11

Address terms


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 VERTEBRATE GENOM GRP 87686 0% 100% 5
2 PROGRAM COMPUTAT BIOL BIOINFORMAT 59360 2% 9% 37
3 COLUMBIA STEM CELL INITIATMED 35074 0% 100% 2
4 GROWTH CONTROL CANC 35074 0% 100% 2
5 PRINCESS MARGARET CANC CENTRE 35074 0% 100% 2
6 FUNCT CANC EPIGENET 31547 1% 15% 12
7 GENOME TECHNOL BIOL GRP 28689 0% 27% 6
8 QUANTITAT BIOMED SCI 24737 1% 12% 12
9 GENOME SCI SYST BIOL 23652 1% 8% 17
10 MED COUNCIL MRC MOL HAEMATOL UNIT 23382 0% 67% 2

Journals


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 GENOME RESEARCH 85669 5% 6% 82
2 EPIGENETICS & CHROMATIN 34909 1% 8% 24
3 BIOINFORMATICS 27717 7% 1% 130
4 GENOME BIOLOGY 12921 3% 2% 47
5 NATURE METHODS 10563 2% 2% 32
6 BMC GENOMICS 10216 4% 1% 75
7 NUCLEIC ACIDS RESEARCH 8684 8% 0% 141
8 NATURE REVIEWS GENETICS 7132 1% 2% 22
9 BMC BIOINFORMATICS 6987 3% 1% 55
10 CELL 4870 4% 0% 65

Author Key Words


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class		 LCSH search Wikipedia search
1 CHIP SEQ 451430 6% 25% 103 Search CHIP+SEQ Search CHIP+SEQ
2 ENHANCER 108902 6% 6% 98 Search ENHANCER Search ENHANCER
3 PEAK CALLING 95477 0% 78% 7 Search PEAK+CALLING Search PEAK+CALLING
4 ENHANCER RNA 73070 0% 83% 5 Search ENHANCER+RNA Search ENHANCER+RNA
5 MASSIVELY PARALLEL REPORTER ASSAYS 70149 0% 100% 4 Search MASSIVELY+PARALLEL+REPORTER+ASSAYS Search MASSIVELY+PARALLEL+REPORTER+ASSAYS
6 DNASE SEQ 57389 0% 55% 6 Search DNASE+SEQ Search DNASE+SEQ
7 CHROMATIN LANDSCAPE 56118 0% 80% 4 Search CHROMATIN+LANDSCAPE Search CHROMATIN+LANDSCAPE
8 ENHANCER PREDICTION 56118 0% 80% 4 Search ENHANCER+PREDICTION Search ENHANCER+PREDICTION
9 ERNA 56110 0% 40% 8 Search ERNA Search ERNA
10 HISTONE MODIFICATION 54508 4% 4% 75 Search HISTONE+MODIFICATION Search HISTONE+MODIFICATION

Core articles
The table includes core articles in the class. The following variables is taken into account for the relevance score of an article in a cluster c:
(1) Number of references referring to publications in the class.
(2) Share of total number of active references referring to publications in the class.
(3) Age of the article. New articles get higher score than old articles.
(4) Citation rate, normalized to year.


Rank Reference # ref.
in cl.		 Shr. of ref. in
cl.		 Citations
1 SHLYUEVA, D , STAMPFEL, G , STARK, A , (2014) TRANSCRIPTIONAL ENHANCERS: FROM PROPERTIES TO GENOME-WIDE PREDICTIONS.NATURE REVIEWS GENETICS. VOL. 15. ISSUE 4. P. 272 -286 61 40% 177
2 KLEFTOGIANNIS, D , KALNIS, P , BAJIC, VB , (2016) PROGRESS AND CHALLENGES IN BIOINFORMATICS APPROACHES FOR ENHANCER IDENTIFICATION.BRIEFINGS IN BIOINFORMATICS. VOL. 17. ISSUE 6. P. 967 -979 69 72% 0
3 ANDERSSON, R , (2015) PROMOTER OR ENHANCER, WHAT'S THE DIFFERENCE? DECONSTRUCTION OF ESTABLISHED DISTINCTIONS AND PRESENTATION OF A UNIFYING MODEL.BIOESSAYS. VOL. 37. ISSUE 3. P. 314 -323 67 58% 14
4 BAILEY, T , KRAJEWSKI, P , LADUNGA, I , LEFEBVRE, C , LI, QH , LIU, T , MADRIGAL, P , TASLIM, C , ZHANG, J , (2013) PRACTICAL GUIDELINES FOR THE COMPREHENSIVE ANALYSIS OF CHIP-SEQ DATA.PLOS COMPUTATIONAL BIOLOGY. VOL. 9. ISSUE 11. P. - 59 66% 47
5 LI, WB , NOTANI, D , ROSENFELD, MG , (2016) ENHANCERS AS NON-CODING RNA TRANSCRIPTION UNITS: RECENT INSIGHTS AND FUTURE PERSPECTIVES.NATURE REVIEWS GENETICS. VOL. 17. ISSUE 4. P. 207 -223 62 35% 15
6 HEINZ, S , ROMANOSKI, CE , BENNER, C , GLASS, CK , (2015) THE SELECTION AND FUNCTION OF CELL TYPE-SPECIFIC ENHANCERS.NATURE REVIEWS MOLECULAR CELL BIOLOGY. VOL. 16. ISSUE 3. P. 144 -154 49 39% 69
7 MEYER, CA , LIU, XS , (2014) IDENTIFYING AND MITIGATING BIAS IN NEXT-GENERATION SEQUENCING METHODS FOR CHROMATIN BIOLOGY.NATURE REVIEWS GENETICS. VOL. 15. ISSUE 11. P. 709 -721 54 50% 34
8 KUNDAJE, A , MEULEMAN, W , ERNST, J , BILENKY, M , YEN, A , HERAVI-MOUSSAVI, A , KHERADPOUR, P , ZHANG, Z , WANG, J , ZILLER, MJ , ET AL (2015) INTEGRATIVE ANALYSIS OF 111 REFERENCE HUMAN EPIGENOMES.NATURE. VOL. 518. ISSUE 7539. P. 317 -330 32 32% 238
9 YAN, LY , GUO, HS , HU, BQ , LI, R , YONG, J , ZHAO, YY , ZHI, X , FAN, XY , GUO, F , WANG, XY , ET AL (2016) EPIGENOMIC LANDSCAPE OF HUMAN FETAL BRAIN, HEART, AND LIVER.JOURNAL OF BIOLOGICAL CHEMISTRY. VOL. 291. ISSUE 9. P. 4386 -4398 38 76% 1
10 HAH, N , BENNER, C , CHONG, LW , YU, RT , DOWNES, M , EVANS, RM , (2015) INFLAMMATION-SENSITIVE SUPER ENHANCERS FORM DOMAINS OF COORDINATELY REGULATED ENHANCER RNAS.PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. VOL. 112. ISSUE 3. P. E297 -E302 32 73% 21

Classes with closest relation at Level 1


Rank Class id link
1 19282 CONSERVED NON CODING ELEMENTS//IROQUOIS//ENERGY ENVIRONM BIOL COMP
2 2111 MOTIF DISCOVERY//TRANSCRIPTION FACTOR BINDING SITE//MOTIF FINDING
3 3065 CHROMOSOME TERRITORY//NUCLEAR ARCHITECTURE//NUCLEAR ORGANIZATION
4 1631 5 HYDROXYMETHYLCYTOSINE//DNA METHYLATION//5HMC
5 12023 SET8//HISTONE//PR SET7
6 7400 RNA SEQ//TRANSCRIPTOME ASSEMBLY//RNA SEQUENCING
7 8478 EQTL//GENETICAL GENOMICS//EQTL MAPPING
8 14125 USP22//SET1//UBIQUITIN SPECIFIC PROTEASE 22
9 11594 CTCF//CONTROL GENET PROC//SUHW
10 3273 NUCLEOSOME POSITIONING//ISWI//NUCLEOSOME

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