Class information for:
Level 1: WHOLE GENOME DUPLICATION//GENOME DUPLICATION//GENE DUPLICATION

Basic class information
Class id #P Avg. number of
references		 Database coverage
of references
8300 1269 52.9 87%


Bar chart of Publication_year

Last years might be incomplete

Hierarchy of classes
The table includes all classes above and classes immediately below the current class.


Cluster id Level Cluster label #P
0 4 BIOCHEMISTRY & MOLECULAR BIOLOGY//CELL BIOLOGY//ONCOLOGY 4064930
90 3       MATHEMATICAL & COMPUTATIONAL BIOLOGY//BIOINFORMATICS//BMC BIOINFORMATICS 77178
126 2             MOLECULAR BIOLOGY AND EVOLUTION//BIOINFORMATICS//MATHEMATICAL & COMPUTATIONAL BIOLOGY 23963
8300 1                   WHOLE GENOME DUPLICATION//GENOME DUPLICATION//GENE DUPLICATION 1269

Terms with highest relevance score


rank Term termType Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 WHOLE GENOME DUPLICATION authKW 617391 6% 36% 72
2 GENOME DUPLICATION authKW 350246 5% 23% 62
3 GENE DUPLICATION authKW 350126 13% 9% 169
4 PLANT GENOME M PING address 163753 3% 17% 40
5 DOSAGE BALANCE authKW 153987 1% 80% 8
6 GENE DUPLICABILITY authKW 144365 0% 100% 6
7 NEOFUNCTIONALIZATION authKW 136828 2% 25% 23
8 PALEOPOLYPLOIDY authKW 132324 1% 50% 11
9 SUBFUNCTIONALIZATION authKW 128491 2% 21% 25
10 GENE RETENTION authKW 128319 1% 67% 8

Web of Science journal categories


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 Genetics & Heredity 30451 64% 0% 807
2 Evolutionary Biology 21710 27% 0% 348
3 Biotechnology & Applied Microbiology 2363 19% 0% 244
4 Biochemistry & Molecular Biology 2208 36% 0% 463
5 Mathematical & Computational Biology 1759 7% 0% 90
6 Developmental Biology 790 5% 0% 68
7 Plant Sciences 731 12% 0% 151
8 Biochemical Research Methods 304 6% 0% 77
9 Biology 292 5% 0% 63
10 Cell Biology 106 7% 0% 86

Address terms


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 PLANT GENOME M PING 163753 3% 17% 40
2 BIOINFORMAT BIOL STAT 106991 1% 34% 13
3 PROGRAM COMPARAT EVOLUTIONARY GENOM 66624 0% 46% 6
4 HUMAN GENOME NETWORK PROJECT 48122 0% 100% 2
5 INFORMAT GEN STRUCT 48122 0% 100% 2
6 IPLANT ABORAT 32738 1% 19% 7
7 MOL MARINE BIOL 31652 0% 26% 5
8 LEHRSTUHL ZOOL EVOLUTIONSBIOL 29859 0% 21% 6
9 CAFS AQUAT GENOM 29608 0% 31% 4
10 SMURFIT GENET 27747 2% 5% 23

Journals


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 MOLECULAR BIOLOGY AND EVOLUTION 51248 9% 2% 109
2 GENOME BIOLOGY AND EVOLUTION 24364 3% 3% 37
3 JOURNAL OF EXPERIMENTAL ZOOLOGY PART B-MOLECULAR AND DEVELOPMENTAL EVOLUTION 21527 2% 4% 25
4 BIOTECHFORUM ( BTF ) 19628 4% 2% 46
5 BMC EVOLUTIONARY BIOLOGY 17283 4% 1% 49
6 TRENDS IN GENETICS 16320 3% 2% 43
7 JOURNAL OF MOLECULAR EVOLUTION 9554 3% 1% 39
8 GENOME BIOLOGY 6281 2% 1% 28
9 GENOME RESEARCH 4451 1% 1% 16
10 BMC GENOMICS 4376 3% 0% 42

Author Key Words


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class		 LCSH search Wikipedia search
1 WHOLE GENOME DUPLICATION 617391 6% 36% 72 Search WHOLE+GENOME+DUPLICATION Search WHOLE+GENOME+DUPLICATION
2 GENOME DUPLICATION 350246 5% 23% 62 Search GENOME+DUPLICATION Search GENOME+DUPLICATION
3 GENE DUPLICATION 350126 13% 9% 169 Search GENE+DUPLICATION Search GENE+DUPLICATION
4 DOSAGE BALANCE 153987 1% 80% 8 Search DOSAGE+BALANCE Search DOSAGE+BALANCE
5 GENE DUPLICABILITY 144365 0% 100% 6 Search GENE+DUPLICABILITY Search GENE+DUPLICABILITY
6 NEOFUNCTIONALIZATION 136828 2% 25% 23 Search NEOFUNCTIONALIZATION Search NEOFUNCTIONALIZATION
7 PALEOPOLYPLOIDY 132324 1% 50% 11 Search PALEOPOLYPLOIDY Search PALEOPOLYPLOIDY
8 SUBFUNCTIONALIZATION 128491 2% 21% 25 Search SUBFUNCTIONALIZATION Search SUBFUNCTIONALIZATION
9 GENE RETENTION 128319 1% 67% 8 Search GENE+RETENTION Search GENE+RETENTION
10 HOX CLUSTER 120904 1% 36% 14 Search HOX+CLUSTER Search HOX+CLUSTER

Core articles
The table includes core articles in the class. The following variables is taken into account for the relevance score of an article in a cluster c:
(1) Number of references referring to publications in the class.
(2) Share of total number of active references referring to publications in the class.
(3) Age of the article. New articles get higher score than old articles.
(4) Citation rate, normalized to year.


Rank Reference # ref.
in cl.		 Shr. of ref. in
cl.		 Citations
1 WANG, YP , WANG, XY , PATERSON, AH , (2012) GENOME AND GENE DUPLICATIONS AND GENE EXPRESSION DIVERGENCE: A VIEW FROM PLANTS.YEAR IN EVOLUTIONARY BIOLOGY. VOL. 1256. ISSUE . P. 1-14 68 61% 49
2 INNAN, H , KONDRASHOV, F , (2010) THE EVOLUTION OF GENE DUPLICATIONS: CLASSIFYING AND DISTINGUISHING BETWEEN MODELS.NATURE REVIEWS GENETICS. VOL. 11. ISSUE 2. P. 97 -108 44 59% 408
3 SATO, Y , NISHIDA, M , (2010) TELEOST FISH WITH SPECIFIC GENOME DUPLICATION AS UNIQUE MODELS OF VERTEBRATE EVOLUTION.ENVIRONMENTAL BIOLOGY OF FISHES. VOL. 88. ISSUE 2. P. 169 -188 75 59% 30
4 GLASAUER, SMK , NEUHAUSS, SCF , (2014) WHOLE-GENOME DUPLICATION IN TELEOST FISHES AND ITS EVOLUTIONARY CONSEQUENCES.MOLECULAR GENETICS AND GENOMICS. VOL. 289. ISSUE 6. P. 1045 -1060 62 48% 52
5 CONANT, GC , BIRCHLER, JA , PIRES, JC , (2014) DOSAGE, DUPLICATION, AND DIPLOIDIZATION: CLARIFYING THE INTERPLAY OF MULTIPLE MODELS FOR DUPLICATE GENE EVOLUTION OVER TIME.CURRENT OPINION IN PLANT BIOLOGY. VOL. 19. ISSUE . P. 91 -98 48 65% 40
6 BYRNE, KP , BLANC, G , (2006) COMPUTATIONAL ANALYSES OF ANCIENT POLYPLOIDY.CURRENT BIOINFORMATICS. VOL. 1. ISSUE 2. P. 131 -146 73 66% 3
7 TAYLOR, JS , RAES, J , (2004) DUPLICATION AND DIVERGENCE: THE EVOLUTION OF NEW GENES AND OLD IDEAS.ANNUAL REVIEW OF GENETICS. VOL. 38. ISSUE . P. 615 -643 55 57% 397
8 JIANG, WK , LIU, YL , XIA, EH , GAO, LZ , (2013) PREVALENT ROLE OF GENE FEATURES IN DETERMINING EVOLUTIONARY FATES OF WHOLE-GENOME DUPLICATION DUPLICATED GENES IN FLOWERING PLANTS.PLANT PHYSIOLOGY. VOL. 161. ISSUE 4. P. 1844-1861 53 61% 24
9 FREELING, M , (2009) BIAS IN PLANT GENE CONTENT FOLLOWING DIFFERENT SORTS OF DUPLICATION: TANDEM, WHOLE-GENOME, SEGMENTAL, OR BY TRANSPOSITION.ANNUAL REVIEW OF PLANT BIOLOGY. VOL. 60. ISSUE . P. 433-453 46 55% 261
10 ACHARYA, D , GHOSH, TC , (2016) GLOBAL ANALYSIS OF HUMAN DUPLICATED GENES REVEALS THE RELATIVE IMPORTANCE OF WHOLE-GENOME DUPLICATES ORIGINATED IN THE EARLY VERTEBRATE EVOLUTION.BMC GENOMICS. VOL. 17. ISSUE . P. - 47 71% 0

Classes with closest relation at Level 1


Rank Class id link
1 34698 ACCELERATION OF AMINO ACID SUBSTITUTIONS//CANCER HUMAN PREDISPOSITION TO//CANCER HUMAN PROGRESSION OF
2 20039 ORTHOLOGY//BIDIRECTIONAL BEST HIT//GENOME FUNCTIONAL PREDICTION
3 6967 POLYPLOIDY//ALLOPOLYPLOIDY//AUTOPOLYPLOIDY
4 16263 INTRALOCUS SEXUAL CONFLICT//SEX BIASED GENE EXPRESSION//SEXUAL ANTAGONISM
5 10256 CODON MODELS//POSITIVE SELECTION//MOLECULAR BIOLOGY AND EVOLUTION
6 28425 PROCESSED PSEUDOGENES//CYP4Z2P//DUPLICATED PSEUDOGENES
7 19282 CONSERVED NON CODING ELEMENTS//IROQUOIS//ENERGY ENVIRONM BIOL COMP
8 14677 GENOME REARRANGEMENT//SORTING BY REVERSALS//GENOME REARRANGEMENTS
9 19783 EXPRESSION EVOLUTION//TRANS REGULATION//CIS REGULATORY DIVERGENCE
10 22783 BIDIRECTIONAL PROMOTER//OPERON PREDICTION//INTERGENIC DISTANCE

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