Class information for:
Level 1: ALPHA HELIX//ALPHA HELIX STABILITY//N CAP

Basic class information
Class id #P Avg. number of
references		 Database coverage
of references
7436 1368 46.1 76%


Bar chart of Publication_year

Last years might be incomplete

Hierarchy of classes
The table includes all classes above and classes immediately below the current class.


Cluster id Level Cluster label #P
0 4 BIOCHEMISTRY & MOLECULAR BIOLOGY//CELL BIOLOGY//ONCOLOGY 4064930
219 3       PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS//PROTEIN FOLDING//PROTEIN STRUCTURE PREDICTION 50409
260 2             PROTEIN FOLDING//JOURNAL OF CHEMICAL THEORY AND COMPUTATION//JOURNAL OF COMPUTATIONAL CHEMISTRY 19582
7436 1                   ALPHA HELIX//ALPHA HELIX STABILITY//N CAP 1368

Terms with highest relevance score


rank Term termType Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 ALPHA HELIX authKW 290824 7% 13% 100
2 ALPHA HELIX STABILITY authKW 208306 1% 67% 14
3 N CAP authKW 189052 1% 71% 12
4 ALANINE BASED PEPTIDES authKW 180786 1% 90% 9
5 HELIX COIL THEORY authKW 178556 1% 100% 8
6 POLYPROLINE II authKW 124972 1% 40% 14
7 HELIX STABILITY authKW 121662 1% 42% 13
8 HELIX PROPENSITIES authKW 121514 1% 78% 7
9 RAMACHANDRAN PLOT authKW 112967 1% 28% 18
10 HELIX COIL TRANSITION authKW 100399 2% 19% 24

Web of Science journal categories


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 Biochemistry & Molecular Biology 7095 59% 0% 807
2 Biophysics 5835 24% 0% 330
3 Chemistry, Physical 936 20% 0% 271
4 Chemistry, Multidisciplinary 414 14% 0% 191
5 Physics, Atomic, Molecular & Chemical 357 8% 0% 104
6 Biochemical Research Methods 88 4% 0% 50
7 Mathematical & Computational Biology 16 1% 0% 13
8 Computer Science, Interdisciplinary Applications 11 1% 0% 20
9 Physics, Fluids & Plasmas 3 1% 0% 13
10 Physics, Mathematical 1 1% 0% 14

Address terms


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 BIOINFORMAT CEN EXCELLENCE STRUCT BIOL BIOC 44639 0% 100% 2
2 N ENGLAND STUCT BIOL 44639 0% 100% 2
3 JENKINS BIOPHYS 32816 0% 29% 5
4 CIENCIAS FIS MATEMAT NAT 29139 1% 16% 8
5 TC JENKINS BIOPHYS 24000 1% 7% 15
6 1831 MIDORIGAOKA 22320 0% 100% 1
7 A060 22320 0% 100% 1
8 BBSRC EPSRC FUNDED SYNTHET BIOL 22320 0% 100% 1
9 BIOMOLEC STRUCT MODELLING UNIT BIOCHEM 22320 0% 100% 1
10 CHEM MOL LIFE SCINAMGU 22320 0% 100% 1

Journals


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 PROTEIN SCIENCE 28758 7% 1% 90
2 PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS 25200 6% 1% 85
3 BIOPOLYMERS 21934 6% 1% 80
4 JOURNAL OF PHYSICAL CHEMISTRY B 7321 8% 0% 113
5 JOURNAL OF MOLECULAR BIOLOGY 6829 6% 0% 85
6 PROTEINS-STRUCTURE FUNCTION AND GENETICS 6061 1% 2% 11
7 BIOCHEMISTRY 5913 9% 0% 120
8 GENETIC ENGINEER & BIOTECHNOLOGIST 5578 0% 25% 1
9 PROTEIN ENGINEERING 4320 2% 1% 21
10 ADVANCES IN PROTEIN CHEMISTRY 3331 1% 2% 7

Author Key Words


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class		 LCSH search Wikipedia search
1 ALPHA HELIX 290824 7% 13% 100 Search ALPHA+HELIX Search ALPHA+HELIX
2 ALPHA HELIX STABILITY 208306 1% 67% 14 Search ALPHA+HELIX+STABILITY Search ALPHA+HELIX+STABILITY
3 N CAP 189052 1% 71% 12 Search N+CAP Search N+CAP
4 ALANINE BASED PEPTIDES 180786 1% 90% 9 Search ALANINE+BASED+PEPTIDES Search ALANINE+BASED+PEPTIDES
5 HELIX COIL THEORY 178556 1% 100% 8 Search HELIX+COIL+THEORY Search HELIX+COIL+THEORY
6 POLYPROLINE II 124972 1% 40% 14 Search POLYPROLINE+II Search POLYPROLINE+II
7 HELIX STABILITY 121662 1% 42% 13 Search HELIX+STABILITY Search HELIX+STABILITY
8 HELIX PROPENSITIES 121514 1% 78% 7 Search HELIX+PROPENSITIES Search HELIX+PROPENSITIES
9 RAMACHANDRAN PLOT 112967 1% 28% 18 Search RAMACHANDRAN+PLOT Search RAMACHANDRAN+PLOT
10 HELIX COIL TRANSITION 100399 2% 19% 24 Search HELIX+COIL+TRANSITION Search HELIX+COIL+TRANSITION

Core articles
The table includes core articles in the class. The following variables is taken into account for the relevance score of an article in a cluster c:
(1) Number of references referring to publications in the class.
(2) Share of total number of active references referring to publications in the class.
(3) Age of the article. New articles get higher score than old articles.
(4) Citation rate, normalized to year.


Rank Reference # ref. in
cl.		 Shr. of ref. in
cl.		 Citations
1 DOIG, AJ , (2008) STABILITY AND DESIGN OF ALPHA-HELICAL PEPTIDES.MOLECULAR BIOLOGY OF PROTEIN FOLDING, PT A. VOL. 83. ISSUE . P. 1 -52 173 76% 9
2 CHENG, RP , GIRINATH, P , SUZUKI, Y , KUO, HT , HSU, HC , WANG, WR , YANG, PA , GULLICKSON, D , WU, CH , KOYACK, MJ , ET AL (2010) POSITIONAL EFFECTS ON HELICAL ALA-BASED PEPTIDES.BIOCHEMISTRY. VOL. 49. ISSUE 43. P. 9372-9384 85 70% 2
3 MIKHONIN, AV , ASHER, SA , BYKOV, SV , MURZA, A , (2007) UV RAMAN SPATIALLY RESOLVED MELTING DYNAMICS OF ISOTOPICALLY LABELED POLYALANYL PEPTIDE: SLOW ALPHA-HELIX MELTING FOLLOWS 3(10)-HELICES AND PI-BULGES PREMELTING.JOURNAL OF PHYSICAL CHEMISTRY B. VOL. 111. ISSUE 12. P. 3280 -3292 104 59% 18
4 DOIG, AJ , (2002) RECENT ADVANCES IN HELIX-COIL THEORY.BIOPHYSICAL CHEMISTRY. VOL. 101. ISSUE . P. 281-293 70 86% 76
5 CHAKRABARTTY, A , BALDWIN, RL , (1995) STABILITY OF ALPHA-HELICES.ADVANCES IN PROTEIN CHEMISTRY, VOL 46. VOL. 46. ISSUE . P. 141-176 69 78% 370
6 ANDREWS, MJI , TABOR, AB , (1999) FORMING STABLE HELICAL PEPTIDES USING NATURAL AND ARTIFICIAL AMINO ACIDS.TETRAHEDRON. VOL. 55. ISSUE 40. P. 11711 -11743 105 54% 121
7 MAKHATADZE, GI , (2005) THERMODYNAMICS OF ALPHA-HELIX FORMATION.PEPTIDE SOLVATION AND H-BONDS. VOL. 72. ISSUE . P. 199 -226 62 77% 18
8 TOAL, S , MERAL, D , VERBARO, D , URBANC, B , SCHWEITZER-STENNER, R , (2013) PH-INDEPENDENCE OF TRIALANINE AND THE EFFECTS OF TERMINI BLOCKING IN SHORT PEPTIDES: A COMBINED VIBRATIONAL, NMR, UVCD, AND MOLECULAR DYNAMICS STUDY.JOURNAL OF PHYSICAL CHEMISTRY B. VOL. 117. ISSUE 14. P. 3689 -3706 52 66% 20
9 SHI, ZS , CHEN, K , LIU, ZG , KALLENBACH, NR , (2006) CONFORMATION OF THE BACKBONE IN UNFOLDED PROTEINS.CHEMICAL REVIEWS. VOL. 106. ISSUE 5. P. 1877-1897 74 45% 157
10 NEWELL, NE , (2015) MAPPING SIDE CHAIN INTERACTIONS AT PROTEIN HELIX TERMINI.BMC BIOINFORMATICS. VOL. 16. ISSUE . P. - 40 82% 1

Classes with closest relation at Level 1


Rank Class id link
1 13680 BETA HAIRPIN//TRP CAGE//SIDE CHAIN INTERACTIONS
2 15175 STAPHYLOCOCCAL NUCLEASE//THERMODYNAMIC MOLECULAR SWITCH//T4 LYSOZYME
3 19037 BIOMAG BANK//PROT DATA BANK EUROPE//CHEMICAL SHIFT
4 5549 COILED COIL//PROTEIN DESIGN//DE NOVO DESIGN
5 25941 BETA SHEET RANDOM COIL TRANSITION//HOMOPOLYPEPTIDE CHAIN//2 VIRIAL COEF
6 15710 ALPHA HELIX MIMETICS//STAPLED PEPTIDES//PROTEOMIMETICS
7 12405 PROTEIN SECONDARY STRUCTURE PREDICTION//SECONDARY STRUCTURE PREDICTION//SOLVENT ACCESSIBILITY
8 573 PROTEIN FOLDING//PHI VALUE//FOLDING RATE
9 18895 AB INITIO MO STUDY//DIPEPTIDE WATER COMPLEX//GIOCOMMS
10 8058 GENERALIZED ENSEMBLE ALGORITHM//REPLICA EXCHANGE METHOD//MULTICANONICAL MOLECULAR DYNAMICS

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