Class information for:
Level 1: PSEUDO AMINO ACID COMPOSITION//PROTEIN STRUCTURAL CLASS//JACKKNIFE TEST

Basic class information
Class id #P Avg. number of
references		 Database coverage
of references
2741 2161 50.1 79%


Bar chart of Publication_year

Last years might be incomplete

Hierarchy of classes
The table includes all classes above and classes immediately below the current class.


Cluster id Level Cluster label #P
0 4 BIOCHEMISTRY & MOLECULAR BIOLOGY//CELL BIOLOGY//ONCOLOGY 4064930
219 3       PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS//PROTEIN FOLDING//PROTEIN STRUCTURE PREDICTION 50409
365 2             PROTEIN STRUCTURE PREDICTION//PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS//PSEUDO AMINO ACID COMPOSITION 17331
2741 1                   PSEUDO AMINO ACID COMPOSITION//PROTEIN STRUCTURAL CLASS//JACKKNIFE TEST 2161

Terms with highest relevance score


rank Term termType Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 PSEUDO AMINO ACID COMPOSITION authKW 1656956 6% 95% 123
2 PROTEIN STRUCTURAL CLASS authKW 516072 2% 83% 44
3 JACKKNIFE TEST authKW 429794 2% 89% 34
4 COMPUTAT MUTAT PROJECT address 427379 2% 92% 33
5 PROTEIN SUBCELLULAR LOCALIZATION authKW 357289 1% 82% 31
6 PSEAAC authKW 282568 1% 100% 20
7 COVARIANT DISCRIMINANT ALGORITHM authKW 240183 1% 100% 17
8 INCREMENT OF DIVERSITY authKW 232498 1% 69% 24
9 NETWORK ORIENTED INTELLIGENT COMPUTAT address 215483 1% 49% 31
10 NEAREST NEIGHBOR ALGORITHM authKW 214552 1% 56% 27

Web of Science journal categories


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 Mathematical & Computational Biology 47158 27% 1% 587
2 Biochemical Research Methods 7813 21% 0% 444
3 Biochemistry & Molecular Biology 5766 44% 0% 948
4 Biology 4286 13% 0% 283
5 Biotechnology & Applied Microbiology 2755 16% 0% 350
6 Biophysics 1295 10% 0% 212
7 Computer Science, Interdisciplinary Applications 1186 7% 0% 149
8 Computer Science, Artificial Intelligence 604 5% 0% 107
9 Chemistry, Medicinal 318 4% 0% 94
10 Mathematics, Interdisciplinary Applications 102 2% 0% 44

Address terms


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 COMPUTAT MUTAT PROJECT 427379 2% 92% 33
2 NETWORK ORIENTED INTELLIGENT COMPUTAT 215483 1% 49% 31
3 NEUROINFORMATMINIST EDUC 180177 1% 49% 26
4 GENOM COMPUTAT BIOL 146140 2% 21% 49
5 COMP AIDED DRUG DISCOVERY 135231 1% 32% 30
6 CEGMR 130973 2% 24% 39
7 ENGN NONFOOD BIOREFINERY 75459 1% 23% 23
8 UPJOHN S 71219 1% 46% 11
9 THEORET BIOPHYS 70958 1% 18% 28
10 BIOINFORMAT DRUG DISCOVERY 64580 0% 57% 8

Journals


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 PROTEIN AND PEPTIDE LETTERS 161007 8% 7% 170
2 JOURNAL OF THEORETICAL BIOLOGY 55999 10% 2% 207
3 CURRENT BIOINFORMATICS 28712 1% 7% 30
4 AMINO ACIDS 28532 4% 2% 85
5 MEDICINAL CHEMISTRY 17480 2% 4% 33
6 BMC BIOINFORMATICS 16162 4% 1% 93
7 BIOINFORMATICS 13672 5% 1% 102
8 COMPUTATIONAL BIOLOGY AND CHEMISTRY 12605 1% 3% 28
9 CURRENT PROTEOMICS 8598 1% 5% 12
10 INTERDISCIPLINARY SCIENCES-COMPUTATIONAL LIFE SCIENCES 6561 1% 4% 12

Author Key Words


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class		 LCSH search Wikipedia search
1 PSEUDO AMINO ACID COMPOSITION 1656956 6% 95% 123 Search PSEUDO+AMINO+ACID+COMPOSITION Search PSEUDO+AMINO+ACID+COMPOSITION
2 PROTEIN STRUCTURAL CLASS 516072 2% 83% 44 Search PROTEIN+STRUCTURAL+CLASS Search PROTEIN+STRUCTURAL+CLASS
3 JACKKNIFE TEST 429794 2% 89% 34 Search JACKKNIFE+TEST Search JACKKNIFE+TEST
4 PROTEIN SUBCELLULAR LOCALIZATION 357289 1% 82% 31 Search PROTEIN+SUBCELLULAR+LOCALIZATION Search PROTEIN+SUBCELLULAR+LOCALIZATION
5 PSEAAC 282568 1% 100% 20 Search PSEAAC Search PSEAAC
6 COVARIANT DISCRIMINANT ALGORITHM 240183 1% 100% 17 Search COVARIANT+DISCRIMINANT+ALGORITHM Search COVARIANT+DISCRIMINANT+ALGORITHM
7 INCREMENT OF DIVERSITY 232498 1% 69% 24 Search INCREMENT+OF+DIVERSITY Search INCREMENT+OF+DIVERSITY
8 NEAREST NEIGHBOR ALGORITHM 214552 1% 56% 27 Search NEAREST+NEIGHBOR+ALGORITHM Search NEAREST+NEIGHBOR+ALGORITHM
9 CHOUS PSEUDO AMINO ACID COMPOSITION 211926 1% 100% 15 Search CHOUS+PSEUDO+AMINO+ACID+COMPOSITION Search CHOUS+PSEUDO+AMINO+ACID+COMPOSITION
10 SUPPORT VECTOR MACHINE 185782 14% 4% 311 Search SUPPORT+VECTOR+MACHINE Search SUPPORT+VECTOR+MACHINE

Core articles
The table includes core articles in the class. The following variables is taken into account for the relevance score of an article in a cluster c:
(1) Number of references referring to publications in the class.
(2) Share of total number of active references referring to publications in the class.
(3) Age of the article. New articles get higher score than old articles.
(4) Citation rate, normalized to year.


Rank Reference # ref. in
cl.		 Shr. of ref. in
cl.		 Citations
1 CHOU, KC , (2015) IMPACTS OF BIOINFORMATICS TO MEDICINAL CHEMISTRY.MEDICINAL CHEMISTRY. VOL. 11. ISSUE 3. P. 218 -234 215 87% 81
2 CHOU, KC , (2011) SOME REMARKS ON PROTEIN ATTRIBUTE PREDICTION AND PSEUDO AMINO ACID COMPOSITION.JOURNAL OF THEORETICAL BIOLOGY. VOL. 273. ISSUE 1. P. 236 -247 174 88% 446
3 CHEN, W , LIN, H , CHOU, KC , (2015) PSEUDO NUCLEOTIDE COMPOSITION OR PSEKNC: AN EFFECTIVE FORMULATION FOR ANALYZING GENOMIC SEQUENCES.MOLECULAR BIOSYSTEMS. VOL. 11. ISSUE 10. P. 2620 -2634 173 93% 28
4 CHEN, W , DING, H , FENG, PM , LIN, H , CHOU, KC , (2016) IACP: A SEQUENCE-BASED TOOL FOR IDENTIFYING ANTICANCER PEPTIDES.ONCOTARGET. VOL. 7. ISSUE 13. P. 16895 -16909 108 84% 16
5 XU, Y , CHOU, KC , (2016) RECENT PROGRESS IN PREDICTING POSTTRANSLATIONAL MODIFICATION SITES IN PROTEINS.CURRENT TOPICS IN MEDICINAL CHEMISTRY. VOL. 16. ISSUE 6. P. 591 -603 144 87% 4
6 JIA, JH , LIU, Z , XIAO, X , LIU, BX , CHOU, KC , (2015) IPPI-ESML: AN ENSEMBLE CLASSIFIER FOR IDENTIFYING THE INTERACTIONS OF PROTEINS BY INCORPORATING THEIR PHYSICOCHEMICAL PROPERTIES AND WAVELET TRANSFORMS INTO PSEAAC.JOURNAL OF THEORETICAL BIOLOGY. VOL. 377. ISSUE . P. 47 -56 106 80% 56
7 CHOU, KC , (2009) PSEUDO AMINO ACID COMPOSITION AND ITS APPLICATIONS IN BIOINFORMATICS, PROTEOMICS AND SYSTEM BIOLOGY.CURRENT PROTEOMICS. VOL. 6. ISSUE 4. P. 262-274 146 83% 160
8 FAN, YN , XIAO, X , MIN, JL , CHOU, KC , (2014) INR-DRUG: PREDICTING THE INTERACTION OF DRUGS WITH NUCLEAR RECEPTORS IN CELLULAR NETWORKING.INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES. VOL. 15. ISSUE 3. P. 4915 -4937 136 86% 28
9 JIA, JH , LIU, Z , XIAO, X , LIU, BX , CHOU, KC , (2016) PSUC-LYS: PREDICT LYSINE SUCCINYLATION SITES IN PROTEINS WITH PSEAAC AND ENSEMBLE RANDOM FOREST APPROACH.JOURNAL OF THEORETICAL BIOLOGY. VOL. 394. ISSUE . P. 223 -230 79 85% 17
10 QIU, WR , XIAO, X , CHOU, KC , (2014) IRSPOT-TNCPSEAAC: IDENTIFY RECOMBINATION SPOTS WITH TRINUCLEOTIDE COMPOSITION AND PSEUDO AMINO ACID COMPONENTS.INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES. VOL. 15. ISSUE 2. P. 1746 -1766 97 88% 79

Classes with closest relation at Level 1


Rank Class id link
1 12405 PROTEIN SECONDARY STRUCTURE PREDICTION//SECONDARY STRUCTURE PREDICTION//SOLVENT ACCESSIBILITY
2 20432 KINASE SPECIFIC//PTM CODE//CELLULAR MOL LOG TEAM
3 36904 UNITE PROTEOMIE FONCTIONNELLE BIOP ERVAT ALIM//ANTI S AUREUS EOS//ANTI S AUREUS PEPTIDES
4 18004 INTERACTION PROPENSITY//PROTEIN RNA INTERACTIONS//DNA BINDING RESIDUES
5 12242 GRAPHICAL REPRESENTATION//ALIGNMENT FREE//ALIGNMENT FREE METHOD
6 9683 EMBL OUTSTN//LECTURE NOTES IN BIOINFORMATICS//PROT INFORMAT OURCE
7 7367 CHEM BIOACT//UNIDAD INVEST DISENO FARMACOS CONECTIVIDAD MOL//UNIV CIENCIA MOL
8 9196 PROTEIN FUNCTION PREDICTION//COMPLEX SCI SOFTWARE//PHYLOGENETIC MOTIFS
9 26332 CYSTEINE BONDING STATE//DISULFIDE CONNECTIVITY PREDICTION//MEDIUM AND LONG RANGE
10 33701 POLYTECH ENGN ALGECIRAS//INTELLIGENT MODELLING SYST GRP//MODELING AND PREDICTING

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