Class information for:
Level 1: SITE SPECIFIC RECOMBINATION//SERINE RECOMBINASE//PHIC31 INTEGRASE

Basic class information
Class id #P Avg. number of
references		 Database coverage
of references
7535 1357 37.3 80%


Bar chart of Publication_year

Last years might be incomplete

Hierarchy of classes
The table includes all classes above and classes immediately below the current class.


Cluster id Level Cluster label #P
7 4 INFECTIOUS DISEASES//MICROBIOLOGY//VIROLOGY 1353914
33 3       JOURNAL OF BACTERIOLOGY//MICROBIOLOGY//MOLECULAR MICROBIOLOGY 107033
1115 2             GENOME EDITING//CRISPR CAS9//CRISPR 9706
7535 1                   SITE SPECIFIC RECOMBINATION//SERINE RECOMBINASE//PHIC31 INTEGRASE 1357

Terms with highest relevance score


rank Term termType Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 SITE SPECIFIC RECOMBINATION authKW 1464779 13% 37% 174
2 SERINE RECOMBINASE authKW 529117 2% 87% 27
3 PHIC31 INTEGRASE authKW 281241 1% 63% 20
4 PHI C31 INTEGRASE authKW 238885 1% 56% 19
5 TYROSINE RECOMBINASE authKW 206699 2% 44% 21
6 SITE SPECIFIC DNA RECOMBINATION authKW 202498 1% 75% 12
7 LAMBDA INTEGRASE authKW 190585 1% 71% 12
8 RECOMBINASE MEDIATED CASSETTE EXCHANGE authKW 170521 1% 63% 12
9 PHAGE INTEGRASE authKW 165682 1% 82% 9
10 BACTERIOPHAGE HK022 authKW 144000 1% 80% 8

Web of Science journal categories


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 Biochemistry & Molecular Biology 8261 63% 0% 861
2 Genetics & Heredity 1683 16% 0% 213
3 Microbiology 1166 13% 0% 182
4 Cell Biology 1135 16% 0% 222
5 Biotechnology & Applied Microbiology 414 9% 0% 119
6 Developmental Biology 278 3% 0% 44
7 Biology 276 5% 0% 64
8 Biochemical Research Methods 180 5% 0% 65
9 Biophysics 71 4% 0% 51
10 Medicine, Research & Experimental 49 3% 0% 47

Address terms


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 ANDERSONS BIOMED LIFE SCI 22500 0% 100% 1
2 ANIM DIS MODELING 22500 0% 100% 1
3 AUSTRALIAN BACTERIAL PATHOGENESIS PROGRAMME 22500 0% 100% 1
4 BACTERIAL GENOME PLASTIC UNIT 22500 0% 100% 1
5 BIOCHEM MOLL BIOL GRP 22500 0% 100% 1
6 BIOL MED BOX G 22500 0% 100% 1
7 BIOL SCI IFM 22500 0% 100% 1
8 BIOMED LIFE 22500 0% 100% 1
9 CELL BIOL GS10 22500 0% 100% 1
10 CHIRURG FOR UNGS OR 22500 0% 100% 1

Journals


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 JOURNAL OF MOLECULAR BIOLOGY 20523 11% 1% 146
2 NUCLEIC ACIDS RESEARCH 8648 9% 0% 124
3 COLD SPRING HARBOR SYMPOSIA ON QUANTITATIVE BIOLOGY 5336 2% 1% 23
4 GENESIS 4799 1% 1% 18
5 FLY 4374 1% 2% 9
6 JOURNAL OF BACTERIOLOGY 4352 6% 0% 81
7 MOLECULAR MICROBIOLOGY 3944 3% 0% 46
8 EMBO JOURNAL 3354 4% 0% 51
9 CELL 2852 3% 0% 44
10 JOURNAL OF KNOT THEORY AND ITS RAMIFICATIONS 2545 1% 1% 14

Author Key Words


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class		 LCSH search Wikipedia search
1 SITE SPECIFIC RECOMBINATION 1464779 13% 37% 174 Search SITE+SPECIFIC+RECOMBINATION Search SITE+SPECIFIC+RECOMBINATION
2 SERINE RECOMBINASE 529117 2% 87% 27 Search SERINE+RECOMBINASE Search SERINE+RECOMBINASE
3 PHIC31 INTEGRASE 281241 1% 63% 20 Search PHIC31+INTEGRASE Search PHIC31+INTEGRASE
4 PHI C31 INTEGRASE 238885 1% 56% 19 Search PHI+C31+INTEGRASE Search PHI+C31+INTEGRASE
5 TYROSINE RECOMBINASE 206699 2% 44% 21 Search TYROSINE+RECOMBINASE Search TYROSINE+RECOMBINASE
6 SITE SPECIFIC DNA RECOMBINATION 202498 1% 75% 12 Search SITE+SPECIFIC+DNA+RECOMBINATION Search SITE+SPECIFIC+DNA+RECOMBINATION
7 LAMBDA INTEGRASE 190585 1% 71% 12 Search LAMBDA+INTEGRASE Search LAMBDA+INTEGRASE
8 RECOMBINASE MEDIATED CASSETTE EXCHANGE 170521 1% 63% 12 Search RECOMBINASE+MEDIATED+CASSETTE+EXCHANGE Search RECOMBINASE+MEDIATED+CASSETTE+EXCHANGE
9 PHAGE INTEGRASE 165682 1% 82% 9 Search PHAGE+INTEGRASE Search PHAGE+INTEGRASE
10 BACTERIOPHAGE HK022 144000 1% 80% 8 Search BACTERIOPHAGE+HK022 Search BACTERIOPHAGE+HK022

Core articles
The table includes core articles in the class. The following variables is taken into account for the relevance score of an article in a cluster c:
(1) Number of references referring to publications in the class.
(2) Share of total number of active references referring to publications in the class.
(3) Age of the article. New articles get higher score than old articles.
(4) Citation rate, normalized to year.


Rank Reference # ref. in
cl.		 Shr. of ref. in
cl.		 Citations
1 GRINDLEY, NDF , WHITESON, KL , RICE, PA , (2006) MECHANISMS OF SITE-SPECIFIC RECOMBINATION.ANNUAL REVIEW OF BIOCHEMISTRY. VOL. 75. ISSUE . P. 567 -605 106 79% 307
2 LEE, L , SADOWSKI, PD , (2005) STRAND SELECTION BY THE TYROSINE RECOMBINASES.PROGRESS IN NUCLEIC ACID RESEARCH AND MOLECULAR BIOLOGY, VOL 80. VOL. 80. ISSUE . P. 1 -42 116 78% 10
3 GROTH, AC , CALOS, MP , (2004) PHAGE INTEGRASES: BIOLOGY AND APPLICATIONS.JOURNAL OF MOLECULAR BIOLOGY. VOL. 335. ISSUE 3. P. 667-678 75 85% 204
4 FOGG, PCM , COLLOMS, S , ROSSER, S , STARK, M , SMITH, MCM , (2014) NEW APPLICATIONS FOR PHAGE INTEGRASES.JOURNAL OF MOLECULAR BIOLOGY. VOL. 426. ISSUE 15. P. 2703 -2716 79 65% 21
5 MA, CH , LIU, YT , SAVVA, CG , ROWLEY, PA , CANNON, B , FAN, HF , RUSSELL, R , HOLZENBURG, A , JAYARAM, M , (2014) ORGANIZATION OF DNA PARTNERS AND STRAND EXCHANGE MECHANISMS DURING FLP SITE-SPECIFIC RECOMBINATION ANALYZED BY DIFFERENCE TOPOLOGY, SINGLE MOLECULE FRET AND SINGLE MOLECULE TPM.JOURNAL OF MOLECULAR BIOLOGY. VOL. 426. ISSUE 4. P. 793 -815 56 86% 2
6 GAJ, T , SIRK, SJ , BARBAS, CF , (2014) EXPANDING THE SCOPE OF SITE-SPECIFIC RECOMBINASES FOR GENETIC AND METABOLIC ENGINEERING.BIOTECHNOLOGY AND BIOENGINEERING. VOL. 111. ISSUE 1. P. 1-15 76 52% 17
7 OLORUNNIJI, FJ , ROSSER, SJ , STARK, WM , (2016) SITE-SPECIFIC RECOMBINASES: MOLECULAR MACHINES FOR THE GENETIC REVOLUTION.BIOCHEMICAL JOURNAL. VOL. 473. ISSUE . P. 673 -684 65 52% 3
8 RAJEEV, L , MALANOWSKA, K , GARDNER, JF , (2009) CHALLENGING A PARADIGM: THE ROLE OF DNA HOMOLOGY IN TYROSINE RECOMBINASE REACTIONS.MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS. VOL. 73. ISSUE 2. P. 300 -+ 59 75% 31
9 BOWYER, J , ZHAO, J , SUBSOONTORN, P , WONG, W , ROSSER, S , BATES, D , (2016) MECHANISTIC MODELING OF A REWRITABLE RECOMBINASE ADDRESSABLE DATA MODULE.IEEE TRANSACTIONS ON BIOMEDICAL CIRCUITS AND SYSTEMS. VOL. 10. ISSUE 6. P. 1161 -1170 45 83% 1
10 VAN DUYNE, GD , RUTHERFORD, K , (2013) LARGE SERINE RECOMBINASE DOMAIN STRUCTURE AND ATTACHMENT SITE BINDING.CRITICAL REVIEWS IN BIOCHEMISTRY AND MOLECULAR BIOLOGY. VOL. 48. ISSUE 5. P. 476-491 51 78% 10

Classes with closest relation at Level 1


Rank Class id link
1 8740 CRE RECOMBINASE//TET SYSTEM//RTTA
2 15145 MARKER FREE//MARKER FREE TRANSGENIC PLANTS//SITE SPECIFIC RECOMBINATION
3 4021 DNA TRANSPOSITION//PHAGE MU//TRANSPOSASE
4 18221 SKIRBALL PROGRAM MOL PATHOGENESIS//RETRON//MSDNA
5 36366 BLOOMINGTON DROSOPHILA STOCK//BEIJING SPREADING WING//EDGP
6 9979 DNA SEGREGATION//FTSK//PARB
7 12602 HOLLIDAY JUNCTION//BRANCH MIGRATION//RUVAB
8 8709 H NS//HISTONE LIKE PROTEIN//NUCLEOID ASSOCIATED PROTEIN
9 13204 PPGPP//STRINGENT RESPONSE//PPPGPP
10 13617 2 MU M PLASMID//2 MU M CIRCLE//YEP VECTOR

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