Class information for:
Level 1: DRUG DESIGN BIOTECHNOL//METAL BINDING RESIDUES//METAL CATIONS M2

Basic class information
Class id #P Avg. number of
references		 Database coverage
of references
26991 240 46.6 79%


Bar chart of Publication_year

Last years might be incomplete

Hierarchy of classes
The table includes all classes above and classes immediately below the current class.


Cluster id Level Cluster label #P
0 4 BIOCHEMISTRY & MOLECULAR BIOLOGY//CELL BIOLOGY//ONCOLOGY 4064930
219 3       PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS//PROTEIN FOLDING//PROTEIN STRUCTURE PREDICTION 50409
365 2             PROTEIN STRUCTURE PREDICTION//PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS//PSEUDO AMINO ACID COMPOSITION 17331
26991 1                   DRUG DESIGN BIOTECHNOL//METAL BINDING RESIDUES//METAL CATIONS M2 240

Terms with highest relevance score


rank Term termType Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 DRUG DESIGN BIOTECHNOL address 415613 3% 47% 7
2 METAL BINDING RESIDUES authKW 254461 1% 100% 2
3 METAL CATIONS M2 authKW 169639 1% 67% 2
4 AB INITIC CALCULATIONS authKW 127231 0% 100% 1
5 ANTI PLATELET AGENTS AND FLAVONOIDS authKW 127231 0% 100% 1
6 APO HOLO PAIRS authKW 127231 0% 100% 1
7 AROMATIC AMINOACID SIDE CHAINS authKW 127231 0% 100% 1
8 BADER CHARGES AIM authKW 127231 0% 100% 1
9 BIDENTATION authKW 127231 0% 100% 1
10 BINUCLEAR ENZYMES authKW 127231 0% 100% 1

Web of Science journal categories


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 Biophysics 783 21% 0% 51
2 Biochemistry & Molecular Biology 722 46% 0% 111
3 Biochemical Research Methods 587 17% 0% 41
4 Mathematical & Computational Biology 466 8% 0% 20
5 Crystallography 323 10% 0% 25
6 Chemistry, Multidisciplinary 231 22% 0% 53
7 Chemistry, Inorganic & Nuclear 129 9% 0% 22
8 Physics, Atomic, Molecular & Chemical 88 9% 0% 21
9 Chemistry, Physical 81 15% 0% 36
10 Biotechnology & Applied Microbiology 49 8% 0% 18

Address terms


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 DRUG DESIGN BIOTECHNOL 415613 3% 47% 7
2 BIO ERSITY ECOSYST 127231 0% 100% 1
3 BIOL DRUG DESIGN 127231 0% 100% 1
4 CHEM DATABASE SERV 127231 0% 100% 1
5 EUROPEAN MOL BIOINFORMAT 127231 0% 100% 1
6 EUSKAL HERRIKO UIBERTSITATEA DONOSTIA INT PHYS 127231 0% 100% 1
7 HUMAN HEZKUNTZA ZIENTZIEN FAK 127231 0% 100% 1
8 MACHINE LEARNING NEUTRAL NETWORKS GRP 127231 0% 100% 1
9 PROGRAMME COMPUTAT STRUCT BIOL 127231 0% 100% 1
10 UMR8229 127231 0% 100% 1

Journals


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS 7187 8% 0% 19
2 ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY 4877 5% 0% 13
3 METALLOMICS 3105 2% 0% 5
4 CURRENT BIOINFORMATICS 2585 1% 1% 3
5 CRYSTALLOGRAPHY REVIEWS 1842 0% 1% 1
6 JOURNAL OF BIOLOGICAL INORGANIC CHEMISTRY 1573 2% 0% 5
7 RECEPTOR 1366 0% 1% 1
8 BIOINFORMATICS 1181 4% 0% 10
9 ARCHAEA-AN INTERNATIONAL MICROBIOLOGICAL JOURNAL 858 0% 1% 1
10 JOURNAL OF INORGANIC BIOCHEMISTRY 806 3% 0% 6

Author Key Words


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class		 LCSH search Wikipedia search
1 METAL BINDING RESIDUES 254461 1% 100% 2 Search METAL+BINDING+RESIDUES Search METAL+BINDING+RESIDUES
2 METAL CATIONS M2 169639 1% 67% 2 Search METAL+CATIONS+M2 Search METAL+CATIONS+M2
3 AB INITIC CALCULATIONS 127231 0% 100% 1 Search AB+INITIC+CALCULATIONS Search AB+INITIC+CALCULATIONS
4 ANTI PLATELET AGENTS AND FLAVONOIDS 127231 0% 100% 1 Search ANTI+PLATELET+AGENTS+AND+FLAVONOIDS Search ANTI+PLATELET+AGENTS+AND+FLAVONOIDS
5 APO HOLO PAIRS 127231 0% 100% 1 Search APO+HOLO+PAIRS Search APO+HOLO+PAIRS
6 AROMATIC AMINOACID SIDE CHAINS 127231 0% 100% 1 Search AROMATIC+AMINOACID+SIDE+CHAINS Search AROMATIC+AMINOACID+SIDE+CHAINS
7 BADER CHARGES AIM 127231 0% 100% 1 Search BADER+CHARGES+AIM Search BADER+CHARGES+AIM
8 BIDENTATION 127231 0% 100% 1 Search BIDENTATION Search BIDENTATION
9 BINUCLEAR ENZYMES 127231 0% 100% 1 Search BINUCLEAR+ENZYMES Search BINUCLEAR+ENZYMES
10 BIO LIGANDS 127231 0% 100% 1 Search BIO+LIGANDS Search BIO+LIGANDS

Core articles
The table includes core articles in the class. The following variables is taken into account for the relevance score of an article in a cluster c:
(1) Number of references referring to publications in the class.
(2) Share of total number of active references referring to publications in the class.
(3) Age of the article. New articles get higher score than old articles.
(4) Citation rate, normalized to year.


Rank Reference # ref.
in cl.		 Shr. of ref. in
cl.		 Citations
1 ROSATO, A , VALASATAVA, Y , ANDREINI, C , (2016) MINIMAL FUNCTIONAL SITES IN METALLOPROTEINS AND THEIR USAGE IN STRUCTURAL BIOINFORMATICS.INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES. VOL. 17. ISSUE 5. P. - 28 54% 0
2 SOBOLEV, V , EDELMAN, M , (2013) WEB TOOLS FOR PREDICTING METAL BINDING SITES IN PROTEINS.ISRAEL JOURNAL OF CHEMISTRY. VOL. 53. ISSUE 3-4. P. 166 -172 22 61% 0
3 LIU, ZX , WANG, YB , ZHOU, CH , XUE, Y , ZHAO, W , LIU, HY , (2014) COMPUTATIONALLY CHARACTERIZING AND COMPREHENSIVE ANALYSIS OF ZINC-BINDING SITES IN PROTEINS.BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS. VOL. 1844. ISSUE 1. P. 171-180 24 51% 2
4 GUTTEN, O , RULISEK, L , (2015) HOW SIMPLE IS TOO SIMPLE? COMPUTATIONAL PERSPECTIVE ON IMPORTANCE OF SECOND-SHELL ENVIRONMENT FOR METAL-ION SELECTIVITY.PHYSICAL CHEMISTRY CHEMICAL PHYSICS. VOL. 17. ISSUE 22. P. 14393 -14404 21 53% 2
5 ZHAO, W , XU, M , LIANG, Z , DING, B , NIU, LW , LIU, HY , TENG, MK , (2011) STRUCTURE-BASED DE NOVO PREDICTION OF ZINC-BINDING SITES IN PROTEINS OF UNKNOWN FUNCTION.BIOINFORMATICS. VOL. 27. ISSUE 9. P. 1262 -1268 16 73% 10
6 PETUKH, M , ZHENIROVSKYY, M , LI, C , LI, L , WANG, L , ALEXOV, E , (2012) PREDICTING NONSPECIFIC ION BINDING USING DELPHI.BIOPHYSICAL JOURNAL. VOL. 102. ISSUE 12. P. 2885 -2893 22 43% 6
7 HE, W , LIANG, Z , TENG, MK , NIU, LW , (2015) MFASD: A STRUCTURE-BASED ALGORITHM FOR DISCRIMINATING DIFFERENT TYPES OF METAL-BINDING SITES.BIOINFORMATICS. VOL. 31. ISSUE 12. P. 1938 -1944 13 59% 4
8 ZHOU, WZ , TANG, GW , ALTMAN, RB , (2015) HIGH RESOLUTION PREDICTION OF CALCIUM-BINDING SITES IN 3D PROTEIN STRUCTURES USING FEATURE.JOURNAL OF CHEMICAL INFORMATION AND MODELING. VOL. 55. ISSUE 8. P. 1663 -1672 12 57% 2
9 GUTTEN, O , RULISEK, L , (2013) PREDICTING THE STABILITY CONSTANTS OF METAL-ION COMPLEXES FROM FIRST PRINCIPLES.INORGANIC CHEMISTRY. VOL. 52. ISSUE 18. P. 10347 -10355 16 40% 11
10 KIRBERGER, M , WANG, X , ZHAO, K , TANG, S , CHEN, GT , YANG, JJ , (2010) INTEGRATION OF DIVERSE RESEARCH METHODS TO ANALYZE AND ENGINEER CA2+-BINDING PROTEINS: FROM PREDICTION TO PRODUCTION.CURRENT BIOINFORMATICS. VOL. 5. ISSUE 1. P. 68-80 26 28% 2

Classes with closest relation at Level 1


Rank Class id link
1 9196 PROTEIN FUNCTION PREDICTION//COMPLEX SCI SOFTWARE//PHYLOGENETIC MOTIFS
2 14197 ARTIFICIAL TRANSCRIPTION FACTOR//ZINC FINGER//RECOGNITION CODE
3 16146 EF HAND PROTEIN//EF HAND//ONCOMODULIN
4 26332 CYSTEINE BONDING STATE//DISULFIDE CONNECTIVITY PREDICTION//MEDIUM AND LONG RANGE
5 11727 METALLOMICS//METALLOPROTEOMICS//INDUCTIVELY COUPLED PLASMA MASS SPECTROMETRY
6 11262 METAL CATION MOLECULE COMPLEX//SCI MODELING COMPUTAT CHINESE//CONTINUAL EDUC
7 11541 CARBONIC ANHYDRASE//HUMAN CARBONIC ANHYDRASE II//IMIDAZOLIDINE RING HYDROLYSIS
8 7584 FERRIC UPTAKE REGULATOR//FUR//NIKR
9 31639 CYCLOALCANES//MOLECULAR CONFORMATIONAL SPACE//FRE 2411
10 8525 PROTON AFFINITY//KINETIC METHOD//PROTONATION ENTROPY

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