Class information for:
Level 1: NSSNPS//POLYPHEN//LSDB

Basic class information
Class id #P Avg. number of
references		 Database coverage
of references
11331 990 43.5 86%


Bar chart of Publication_year

Last years might be incomplete

Hierarchy of classes
The table includes all classes above and classes immediately below the current class.


Cluster id Level Cluster label #P
0 4 BIOCHEMISTRY & MOLECULAR BIOLOGY//CELL BIOLOGY//ONCOLOGY 4064930
219 3       PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS//PROTEIN FOLDING//PROTEIN STRUCTURE PREDICTION 50409
365 2             PROTEIN STRUCTURE PREDICTION//PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS//PSEUDO AMINO ACID COMPOSITION 17331
11331 1                   NSSNPS//POLYPHEN//LSDB 990

Terms with highest relevance score


rank Term termType Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 NSSNPS authKW 510979 3% 61% 27
2 POLYPHEN authKW 260608 1% 65% 13
3 LSDB authKW 257006 2% 56% 15
4 HUMAN MUTATION journal 150327 14% 4% 139
5 PATHOGENICITY PREDICTION authKW 146946 1% 53% 9
6 SNYDER ROBINSON SYNDROME authKW 138787 1% 75% 6
7 MUTATION DATABASE authKW 133011 2% 25% 17
8 BRISTOL SYST BIOMED address 123369 0% 100% 4
9 POLYPHEN 2 authKW 110148 1% 71% 5
10 DBNSFP authKW 92527 0% 100% 3

Web of Science journal categories


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 Mathematical & Computational Biology 14781 23% 0% 223
2 Genetics & Heredity 7212 36% 0% 354
3 Biochemical Research Methods 3714 21% 0% 207
4 Biotechnology & Applied Microbiology 3439 26% 0% 254
5 Biochemistry & Molecular Biology 1577 35% 0% 348
6 Biophysics 247 7% 0% 67
7 Medical Informatics 61 1% 0% 11
8 Computer Science, Interdisciplinary Applications 25 2% 0% 20
9 Cell Biology 14 4% 0% 41
10 Medicine, Research & Experimental 4 2% 0% 20

Address terms


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 BRISTOL SYST BIOMED 123369 0% 100% 4
2 NETWORK BIOMED RARE DIS CIBERER 92527 0% 100% 3
3 BIOTECHNOL CHEM BIOMED ENGN 80578 1% 19% 14
4 GENOM DISORDERS 55963 1% 26% 7
5 HUMAN VARIOME PROJECT 55514 0% 60% 3
6 CELL BIOL GENETMGC 41122 0% 67% 2
7 PL INFORMAT MANAGEMENT ECON 41122 0% 67% 2
8 BIO SCI TECHNOL 35848 2% 6% 21
9 AFFILIATED HOSP 1BEIJING GENOME CAS 30842 0% 100% 1
10 AGR BYPROD PROC 30842 0% 100% 1

Journals


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 HUMAN MUTATION 150327 14% 4% 139
2 BIOINFORMATICS 24457 9% 1% 92
3 INTERDISCIPLINARY SCIENCES-COMPUTATIONAL LIFE SCIENCES 19537 1% 5% 14
4 BMC BIOINFORMATICS 11052 5% 1% 52
5 NUCLEIC ACIDS RESEARCH 6104 9% 0% 89
6 BMC GENOMICS 3255 3% 0% 32
7 DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION 2308 1% 1% 7
8 GENOME MEDICINE 2297 1% 1% 7
9 HUMAN GENOMICS 2163 0% 2% 3
10 BRIEFINGS IN BIOINFORMATICS 2161 1% 1% 7

Author Key Words


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class		 LCSH search Wikipedia search
1 NSSNPS 510979 3% 61% 27 Search NSSNPS Search NSSNPS
2 POLYPHEN 260608 1% 65% 13 Search POLYPHEN Search POLYPHEN
3 LSDB 257006 2% 56% 15 Search LSDB Search LSDB
4 PATHOGENICITY PREDICTION 146946 1% 53% 9 Search PATHOGENICITY+PREDICTION Search PATHOGENICITY+PREDICTION
5 SNYDER ROBINSON SYNDROME 138787 1% 75% 6 Search SNYDER+ROBINSON+SYNDROME Search SNYDER+ROBINSON+SYNDROME
6 MUTATION DATABASE 133011 2% 25% 17 Search MUTATION+DATABASE Search MUTATION+DATABASE
7 POLYPHEN 2 110148 1% 71% 5 Search POLYPHEN+2 Search POLYPHEN+2
8 DBNSFP 92527 0% 100% 3 Search DBNSFP Search DBNSFP
9 FATHMM 92527 0% 100% 3 Search FATHMM Search FATHMM
10 SNPSGO 92527 0% 100% 3 Search SNPSGO Search SNPSGO

Core articles
The table includes core articles in the class. The following variables is taken into account for the relevance score of an article in a cluster c:
(1) Number of references referring to publications in the class.
(2) Share of total number of active references referring to publications in the class.
(3) Age of the article. New articles get higher score than old articles.
(4) Citation rate, normalized to year.


Rank Reference # ref. in
cl.		 Shr. of ref. in
cl.		 Citations
1 NIROULA, A , VIHINEN, M , (2016) VARIATION INTERPRETATION PREDICTORS: PRINCIPLES, TYPES, PERFORMANCE, AND CHOICE.HUMAN MUTATION. VOL. 37. ISSUE 6. P. 579 -597 111 46% 6
2 KUMAR, A , RAJENDRAN, V , SETHUMADHAVAN, R , SHUKLA, P , TIWARI, S , PUROHIT, R , (2014) COMPUTATIONAL SNP ANALYSIS: CURRENT APPROACHES AND FUTURE PROSPECTS.CELL BIOCHEMISTRY AND BIOPHYSICS. VOL. 68. ISSUE 2. P. 233-239 43 88% 6
3 RIERA, C , LOIS, S , DE LA CRUZ, X , (2014) PREDICTION OF PATHOLOGICAL MUTATIONS IN PROTEINS: THE CHALLENGE OF INTEGRATING SEQUENCE CONSERVATION AND STRUCTURE STABILITY PRINCIPLES.WILEY INTERDISCIPLINARY REVIEWS-COMPUTATIONAL MOLECULAR SCIENCE. VOL. 4. ISSUE 3. P. 249 -268 64 52% 2
4 KULSHRESHTHA, S , CHAUDHARY, V , GOSWAMI, GK , MATHUR, N , (2016) COMPUTATIONAL APPROACHES FOR PREDICTING MUTANT PROTEIN STABILITY.JOURNAL OF COMPUTER-AIDED MOLECULAR DESIGN. VOL. 30. ISSUE 5. P. 401 -412 45 71% 0
5 WANG, MJ , SUN, ZW , AKUTSU, T , SONG, JM , (2013) RECENT ADVANCES IN PREDICTING FUNCTIONAL IMPACT OF SINGLE AMINO ACID POLYMORPHISMS: A REVIEW OF USEFUL FEATURES, COMPUTATIONAL METHODS AND AVAILABLE TOOLS.CURRENT BIOINFORMATICS. VOL. 8. ISSUE 2. P. 161 -176 56 59% 6
6 TANG, HM , THOMAS, PD , (2016) TOOLS FOR PREDICTING THE FUNCTIONAL IMPACT OF NONSYNONYMOUS GENETIC VARIATION.GENETICS. VOL. 203. ISSUE 2. P. 635 -647 55 52% 0
7 PONS, T , VAZQUEZ, M , MATEY-HERNANDEZ, ML , BRUNAK, S , VALENCIA, A , IZARZUGAZA, JMG , (2016) KINMUTRF: A RANDOM FOREST CLASSIFIER OF SEQUENCE VARIANTS IN THE HUMAN PROTEIN KINASE SUPERFAMILY.BMC GENOMICS. VOL. 17. ISSUE . P. - 40 70% 0
8 PETERSON, TA , DOUGHTY, E , KANN, MG , (2013) TOWARDS PRECISION MEDICINE: ADVANCES IN COMPUTATIONAL APPROACHES FOR THE ANALYSIS OF HUMAN VARIANTS.JOURNAL OF MOLECULAR BIOLOGY. VOL. 425. ISSUE 21. P. 4047 -4063 60 40% 31
9 CASTELLANA, S , MAZZA, T , (2013) CONGRUENCY IN THE PREDICTION OF PATHOGENIC MISSENSE MUTATIONS: STATE-OF-THE-ART WEB-BASED TOOLS.BRIEFINGS IN BIOINFORMATICS. VOL. 14. ISSUE 4. P. 448 -459 34 72% 27
10 KUMAR, P , HENIKOFF, S , NG, PC , (2009) PREDICTING THE EFFECTS OF CODING NON-SYNONYMOUS VARIANTS ON PROTEIN FUNCTION USING THE SIFT ALGORITHM.NATURE PROTOCOLS. VOL. 4. ISSUE 7. P. 1073-1082 12 71% 2135

Classes with closest relation at Level 1


Rank Class id link
1 10177 RETURN OF RESULTS//INCIDENTAL FINDINGS//SECONDARY FINDINGS
2 10975 GENE PRIORITIZATION//DISEASE GENE PREDICTION//HUMAN DISEASE NETWORK
3 3965 EVOLUT CANC//CANCER GENOME//CANCER GENOMICS
4 15175 STAPHYLOCOCCAL NUCLEASE//THERMODYNAMIC MOLECULAR SWITCH//T4 LYSOZYME
5 3009 RARE VARIANTS//GENETIC EPIDEMIOLOGY//BURDEN TEST
6 2013 GENOME ASSEMBLY//BIOINFORMATICS//VARIANT CALLING
7 20432 KINASE SPECIFIC//PTM CODE//CELLULAR MOL LOG TEAM
8 4394 HAPLOTYPE INFERENCE//LINKAGE DISEQUILIBRIUM//HAPLOTYPE ASSEMBLY
9 19282 CONSERVED NON CODING ELEMENTS//IROQUOIS//ENERGY ENVIRONM BIOL COMP
10 9196 PROTEIN FUNCTION PREDICTION//COMPLEX SCI SOFTWARE//PHYLOGENETIC MOTIFS

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