Class information for:
Level 1: KINASE SPECIFIC//PTM CODE//CELLULAR MOL LOG TEAM

Basic class information
Class id #P Avg. number of
references		 Database coverage
of references
20432 461 48.1 89%


Bar chart of Publication_year

Last years might be incomplete

Hierarchy of classes
The table includes all classes above and classes immediately below the current class.


Cluster id Level Cluster label #P
0 4 BIOCHEMISTRY & MOLECULAR BIOLOGY//CELL BIOLOGY//ONCOLOGY 4064930
219 3       PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS//PROTEIN FOLDING//PROTEIN STRUCTURE PREDICTION 50409
365 2             PROTEIN STRUCTURE PREDICTION//PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS//PSEUDO AMINO ACID COMPOSITION 17331
20432 1                   KINASE SPECIFIC//PTM CODE//CELLULAR MOL LOG TEAM 461

Terms with highest relevance score


rank Term termType Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 KINASE SPECIFIC authKW 198709 1% 100% 3
2 PTM CODE authKW 198709 1% 100% 3
3 CELLULAR MOL LOG TEAM address 150531 1% 45% 5
4 PHOSPHORYLATION NETWORK authKW 149030 1% 75% 3
5 PHOSPHORYLATION PREDICTION authKW 132472 0% 100% 2
6 POSITION WEIGHT AMINO ACID COMPOSITION authKW 132472 0% 100% 2
7 POST TRANSLATIONAL MODIFICATIONS OF PROTEINS PTMS authKW 132472 0% 100% 2
8 PROFILE PROFILE SEQUENCE SIMILARITY PSI BLAST FFAS authKW 132472 0% 100% 2
9 SOL H SNYDER NEUROSCI address 132472 0% 100% 2
10 SOLVENT ACCESSIBLE SURFACE AREA ASA authKW 132472 0% 100% 2

Web of Science journal categories


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 Mathematical & Computational Biology 10517 28% 0% 128
2 Biochemical Research Methods 5096 35% 0% 162
3 Biotechnology & Applied Microbiology 1425 24% 0% 112
4 Biochemistry & Molecular Biology 1384 46% 0% 213
5 Cell Biology 215 13% 0% 59
6 Genetics & Heredity 119 8% 0% 37
7 Biology 86 5% 0% 21
8 Biophysics 66 5% 0% 25
9 Computer Science, Interdisciplinary Applications 30 3% 0% 13
10 Evolutionary Biology 19 2% 0% 8

Address terms


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 CELLULAR MOL LOG TEAM 150531 1% 45% 5
2 SOL H SNYDER NEUROSCI 132472 0% 100% 2
3 MOL BIOINFORMAT 73578 2% 11% 10
4 ADV CHEM PHYS BIOL PHARMACEUT SCI 66236 0% 100% 1
5 BIOPHYSEPIGEN TRANSLAT PROGRAM 66236 0% 100% 1
6 CHROMATOG RANDA 66236 0% 100% 1
7 COMP INTELLIGENCE LEARNING DISCOVERY 66236 0% 100% 1
8 CYBERNET INTELLIGENCE 66236 0% 100% 1
9 EPIGENET CHROMATIN DYNAMEPIGEN TRANSLAT PR 66236 0% 100% 1
10 GENOME ORIENTED BIOINFORRNAT 66236 0% 100% 1

Journals


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 BIOINFORMATICS 12016 10% 0% 44
2 BMC BIOINFORMATICS 11411 8% 0% 36
3 DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION 6496 2% 1% 8
4 SCIENCE SIGNALING 5176 2% 1% 11
5 MOLECULAR & CELLULAR PROTEOMICS 4817 3% 0% 15
6 MOLECULAR BIOSYSTEMS 2435 2% 0% 10
7 BRIEFINGS IN BIOINFORMATICS 2373 1% 1% 5
8 NUCLEIC ACIDS RESEARCH 2258 8% 0% 37
9 MOLECULAR SYSTEMS BIOLOGY 2180 1% 1% 5
10 PLOS COMPUTATIONAL BIOLOGY 1417 2% 0% 10

Author Key Words


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class		 LCSH search Wikipedia search
1 KINASE SPECIFIC 198709 1% 100% 3 Search KINASE+SPECIFIC Search KINASE+SPECIFIC
2 PTM CODE 198709 1% 100% 3 Search PTM+CODE Search PTM+CODE
3 PHOSPHORYLATION NETWORK 149030 1% 75% 3 Search PHOSPHORYLATION+NETWORK Search PHOSPHORYLATION+NETWORK
4 PHOSPHORYLATION PREDICTION 132472 0% 100% 2 Search PHOSPHORYLATION+PREDICTION Search PHOSPHORYLATION+PREDICTION
5 POSITION WEIGHT AMINO ACID COMPOSITION 132472 0% 100% 2 Search POSITION+WEIGHT+AMINO+ACID+COMPOSITION Search POSITION+WEIGHT+AMINO+ACID+COMPOSITION
6 POST TRANSLATIONAL MODIFICATIONS OF PROTEINS PTMS 132472 0% 100% 2 Search POST+TRANSLATIONAL+MODIFICATIONS+OF+PROTEINS+PTMS Search POST+TRANSLATIONAL+MODIFICATIONS+OF+PROTEINS+PTMS
7 PROFILE PROFILE SEQUENCE SIMILARITY PSI BLAST FFAS 132472 0% 100% 2 Search PROFILE+PROFILE+SEQUENCE+SIMILARITY+PSI+BLAST+FFAS Search PROFILE+PROFILE+SEQUENCE+SIMILARITY+PSI+BLAST+FFAS
8 SOLVENT ACCESSIBLE SURFACE AREA ASA 132472 0% 100% 2 Search SOLVENT+ACCESSIBLE+SURFACE+AREA+ASA Search SOLVENT+ACCESSIBLE+SURFACE+AREA+ASA
9 PHOSPHORYLATION SITE PREDICTION 119223 1% 60% 3 Search PHOSPHORYLATION+SITE+PREDICTION Search PHOSPHORYLATION+SITE+PREDICTION
10 APK 88314 0% 67% 2 Search APK Search APK

Core articles
The table includes core articles in the class. The following variables is taken into account for the relevance score of an article in a cluster c:
(1) Number of references referring to publications in the class.
(2) Share of total number of active references referring to publications in the class.
(3) Age of the article. New articles get higher score than old articles.
(4) Citation rate, normalized to year.


Rank Reference # ref.
in cl.		 Shr. of ref. in
cl.		 Citations
1 TROST, B , KUSALIK, A , (2011) COMPUTATIONAL PREDICTION OF EUKARYOTIC PHOSPHORYLATION SITES.BIOINFORMATICS. VOL. 27. ISSUE 21. P. 2927 -2935 60 63% 52
2 HUANG, GH , LI, XM , (2015) A REVIEW OF COMPUTATIONAL IDENTIFICATION OF PROTEIN POST-TRANSLATIONAL MODIFICATIONS.MINI-REVIEWS IN ORGANIC CHEMISTRY. VOL. 12. ISSUE 6. P. 468 -480 77 51% 0
3 PALMERI, A , FERRE, F , HELMER-CITTERICH, M , (2014) EXPLOITING HOLISTIC APPROACHES TO MODEL SPECIFICITY IN PROTEIN PHOSPHORYLATION.FRONTIERS IN GENETICS. VOL. 5. ISSUE . P. - 51 57% 2
4 XUE, Y , GAO, XJ , CAO, J , LIU, ZX , JIN, CJ , WEN, LP , YAO, XB , REN, JA , (2010) A SUMMARY OF COMPUTATIONAL RESOURCES FOR PROTEIN PHOSPHORYLATION.CURRENT PROTEIN & PEPTIDE SCIENCE. VOL. 11. ISSUE 6. P. 485-496 51 53% 23
5 GONG, HP , LIU, XQ , WU, J , HE, ZY , (2014) DATA CONSTRUCTION FOR PHOSPHORYLATION SITE PREDICTION.BRIEFINGS IN BIOINFORMATICS. VOL. 15. ISSUE 5. P. 839 -855 27 87% 0
6 SU, MG , LEE, TY , (2013) INCORPORATING SUBSTRATE SEQUENCE MOTIFS AND SPATIAL AMINO ACID COMPOSITION TO IDENTIFY KINASE-SPECIFIC PHOSPHORYLATION SITES ON PROTEIN THREE-DIMENSIONAL STRUCTURES.BMC BIOINFORMATICS. VOL. 14. ISSUE . P. - 30 75% 5
7 HUANG, KY , SU, MG , KAO, HJ , HSIEH, YC , JHONG, JH , CHENG, KH , HUANG, HD , LEE, TY , (2016) DBPTM 2016: 10-YEAR ANNIVERSARY OF A RESOURCE FOR POST-TRANSLATIONAL MODIFICATION OF PROTEINS.NUCLEIC ACIDS RESEARCH. VOL. 44. ISSUE D1. P. D435 -D446 31 48% 6
8 VESELOVSKY, AV , POROIKOV, VV , SOBOLEV, BN , (2014) PREDICTION OF PROTEIN POST-TRANSLATIONAL MODIFICATIONS: MAIN TRENDS AND METHODS.RUSSIAN CHEMICAL REVIEWS. VOL. 83. ISSUE 2. P. 143 -154 50 41% 2
9 TROST, B , MALEKI, F , KUSALIK, A , NAPPER, S , (2016) DAPPLE 2: A TOOL FOR THE HOMOLOGY-BASED PREDICTION OF POST-TRANSLATIONAL MODIFICATION SITES.JOURNAL OF PROTEOME RESEARCH. VOL. 15. ISSUE 8. P. 2760 -2767 24 69% 1
10 WANG, MH , JIANG, YJ , XU, XY , (2015) A NOVEL METHOD FOR PREDICTING POST-TRANSLATIONAL MODIFICATIONS ON SERINE AND THREONINE SITES BY USING SITE-MODIFICATION NETWORK PROFILES.MOLECULAR BIOSYSTEMS. VOL. 11. ISSUE 11. P. 3092 -3100 24 63% 2

Classes with closest relation at Level 1


Rank Class id link
1 4677 PHOSPHOPROTEOMICS//PHOSPHOPEPTIDES//PHOSPHOPEPTIDE ENRICHMENT
2 31973 PUPYLATION//PROKARYOTIC UBIQUITIN LIKE PROTEIN//PAFA
3 8818 BIOL RUMENTAT//INTRINSICALLY DISORDERED PROTEINS//INTRINSIC DISORDER
4 19394 N TERMINAL ACETYLTRANSFERASE//ARD1//N TERMINAL ACETYLATION
5 2741 PSEUDO AMINO ACID COMPOSITION//PROTEIN STRUCTURAL CLASS//JACKKNIFE TEST
6 22552 O GLYCOSYLATION//PPGALNAC T//GALNAC TRANSFERASE
7 9656 JOURNAL OF BIOMOLECULAR SCREENING//ASSAY AND DRUG DEVELOPMENT TECHNOLOGIES//PHOS TAG
8 26252 TYROSYLPROTEIN SULFOTRANSFERASE//TYROSINE SULFATION//PROTEIN SULFATION
9 17383 BY KINASE//BACTERIAL PROTEIN KINASES//BACTERIAL PROTEIN PHOSPHORYLATION
10 37128 C MANNOSYLATION//MESIR PASTE//ACONOGONON MOLLE

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