Class information for:
Level 1: TEXT MIN//TEXT MINING//BIOMEDICAL TEXT MINING

Basic class information
Class id #P Avg. number of
references		 Database coverage
of references
4183 1832 34.6 51%


Bar chart of Publication_year

Last years might be incomplete

Hierarchy of classes
The table includes all classes above and classes immediately below the current class.


Cluster id Level Cluster label #P
9 4 COMPUTER SCIENCE, THEORY & METHODS//COMPUTER SCIENCE, ARTIFICIAL INTELLIGENCE//COMPUTER SCIENCE, INFORMATION SYSTEMS 1247339
20 3       COMPUTER SCIENCE, INFORMATION SYSTEMS//COMPUTER SCIENCE, THEORY & METHODS//COMPUTER SCIENCE, SOFTWARE ENGINEERING 118625
164 2             RECOMMENDER SYSTEMS//COLLABORATIVE FILTERING//COMPUTER SCIENCE, ARTIFICIAL INTELLIGENCE 22632
4183 1                   TEXT MIN//TEXT MINING//BIOMEDICAL TEXT MINING 1832

Terms with highest relevance score


rank Term termType Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 TEXT MIN address 615593 3% 75% 49
2 TEXT MINING authKW 578878 12% 16% 215
3 BIOMEDICAL TEXT MINING authKW 368158 1% 82% 27
4 DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION journal 315242 6% 17% 111
5 LITERATURE BASED DISCOVERY authKW 274260 1% 69% 24
6 INFORMATION EXTRACTION authKW 264399 5% 16% 98
7 NAMED ENTITY RECOGNITION authKW 250639 2% 40% 38
8 BMC BIOINFORMATICS journal 186925 16% 4% 290
9 BIOMEDICAL LITERATURE authKW 178376 1% 63% 17
10 COMPUTAT PHARMACOL address 172844 1% 45% 23

Web of Science journal categories


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 Mathematical & Computational Biology 116162 46% 1% 844
2 Medical Informatics 23805 14% 1% 259
3 Biochemical Research Methods 22876 37% 0% 683
4 Biotechnology & Applied Microbiology 12518 35% 0% 647
5 Computer Science, Interdisciplinary Applications 5161 15% 0% 270
6 Computer Science, Information Systems 4360 13% 0% 240
7 Information Science & Library Science 2810 6% 0% 117
8 Computer Science, Artificial Intelligence 2253 10% 0% 177
9 Health Care Sciences & Services 591 4% 0% 78
10 Computer Science, Theory & Methods 303 4% 0% 77

Address terms


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 TEXT MIN 615593 3% 75% 49
2 COMPUTAT PHARMACOL 172844 1% 45% 23
3 BITEM GRP 99996 0% 100% 6
4 TEXT MIN NACTEM 90734 0% 78% 7
5 LISTER HILL BIOMED COMMUN 55061 1% 17% 20
6 TEXT MIN GRP 53330 0% 80% 4
7 INTELLIGENT AGENT SYST 49998 0% 100% 3
8 TEXT MIN SERV 49998 0% 100% 3
9 COMPUTAT LINGUIST 47957 1% 12% 25
10 KNOWLEDGE MANAGEMENT BIOINFORMAT 46290 0% 56% 5

Journals


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION 315242 6% 17% 111
2 BMC BIOINFORMATICS 186925 16% 4% 290
3 JOURNAL OF BIOMEDICAL INFORMATICS 149828 6% 8% 115
4 JOURNAL OF BIOMEDICAL SEMANTICS 99381 2% 16% 38
5 BIOINFORMATICS 79901 12% 2% 226
6 INTERNATIONAL JOURNAL OF DATA MINING AND BIOINFORMATICS 28139 1% 6% 27
7 BRIEFINGS IN BIOINFORMATICS 12641 1% 3% 23
8 JOURNAL OF THE AMERICAN MEDICAL INFORMATICS ASSOCIATION 11710 3% 1% 48
9 IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS 11508 2% 2% 28
10 BMC MEDICAL INFORMATICS AND DECISION MAKING 6322 1% 2% 20

Author Key Words


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class		 LCSH search Wikipedia search
1 TEXT MINING 578878 12% 16% 215 Search TEXT+MINING Search TEXT+MINING
2 BIOMEDICAL TEXT MINING 368158 1% 82% 27 Search BIOMEDICAL+TEXT+MINING Search BIOMEDICAL+TEXT+MINING
3 LITERATURE BASED DISCOVERY 274260 1% 69% 24 Search LITERATURE+BASED+DISCOVERY Search LITERATURE+BASED+DISCOVERY
4 INFORMATION EXTRACTION 264399 5% 16% 98 Search INFORMATION+EXTRACTION Search INFORMATION+EXTRACTION
5 NAMED ENTITY RECOGNITION 250639 2% 40% 38 Search NAMED+ENTITY+RECOGNITION Search NAMED+ENTITY+RECOGNITION
6 BIOMEDICAL LITERATURE 178376 1% 63% 17 Search BIOMEDICAL+LITERATURE Search BIOMEDICAL+LITERATURE
7 BIONLP 171419 1% 86% 12 Search BIONLP Search BIONLP
8 BIOMEDICAL NAMED ENTITY RECOGNITION 149994 0% 100% 9 Search BIOMEDICAL+NAMED+ENTITY+RECOGNITION Search BIOMEDICAL+NAMED+ENTITY+RECOGNITION
9 NATURAL LANGUAGE PROCESSING 142244 6% 8% 105 Search NATURAL+LANGUAGE+PROCESSING Search NATURAL+LANGUAGE+PROCESSING
10 LITERATURE MINING 131682 1% 44% 18 Search LITERATURE+MINING Search LITERATURE+MINING

Core articles
The table includes core articles in the class. The following variables is taken into account for the relevance score of an article in a cluster c:
(1) Number of references referring to publications in the class.
(2) Share of total number of active references referring to publications in the class.
(3) Age of the article. New articles get higher score than old articles.
(4) Citation rate, normalized to year.


Rank Reference # ref.
in cl.		 Shr. of ref. in
cl.		 Citations
1 GARTEN, Y , COULET, A , ALTMAN, RB , (2010) RECENT PROGRESS IN AUTOMATICALLY EXTRACTING INFORMATION FROM THE PHARMACOGENOMIC LITERATURE.PHARMACOGENOMICS. VOL. 11. ISSUE 10. P. 1467 -1489 67 81% 17
2 JENSEN, LJ , SARIC, J , BORK, P , (2006) LITERATURE MINING FOR THE BIOLOGIST: FROM INFORMATION RETRIEVAL TO BIOLOGICAL DISCOVERY.NATURE REVIEWS GENETICS. VOL. 7. ISSUE 2. P. 119 -129 55 72% 282
3 HUANG, CC , LU, ZY , (2016) COMMUNITY CHALLENGES IN BIOMEDICAL TEXT MINING OVER 10 YEARS: SUCCESS, FAILURE AND THE FUTURE.BRIEFINGS IN BIOINFORMATICS. VOL. 17. ISSUE 1. P. 132 -144 41 84% 2
4 REBHOLZ-SCHUHMANN, D , KAFKAS, S , KIM, JH , LI, C , YEPES, AJ , HOEHNDORF, R , BACKOFEN, R , LEWIN, I , (2013) EVALUATING GOLD STANDARD CORPORA AGAINST GENE/PROTEIN TAGGING SOLUTIONS AND LEXICAL RESOURCES.JOURNAL OF BIOMEDICAL SEMANTICS. VOL. 4. ISSUE . P. - 45 92% 4
5 VANEGAS, JA , MATOS, S , GONZALEZ, F , OLIVEIRA, JL , (2015) AN OVERVIEW OF BIOMOLECULAR EVENT EXTRACTION FROM SCIENTIFIC DOCUMENTS.COMPUTATIONAL AND MATHEMATICAL METHODS IN MEDICINE. VOL. . ISSUE . P. - 45 90% 0
6 HAHN, U , COHEN, KB , GARTEN, Y , SHAH, NH , (2012) MINING THE PHARMACOGENOMICS LITERATURE-A SURVEY OF THE STATE OF THE ART.BRIEFINGS IN BIOINFORMATICS. VOL. 13. ISSUE 4. P. 460 -494 71 57% 13
7 LI, C , LIAKATA, M , REBHOLZ-SCHUHMANN, D , (2014) BIOLOGICAL NETWORK EXTRACTION FROM SCIENTIFIC LITERATURE: STATE OF THE ART AND CHALLENGES.BRIEFINGS IN BIOINFORMATICS. VOL. 15. ISSUE 5. P. 856 -877 58 60% 16
8 LU, ZY , WEI, CH , KAO, HY , (2015) GNORMPLUS: AN INTEGRATIVE APPROACH FOR TAGGING GENES, GENE FAMILIES, AND PROTEIN DOMAINS.BIOMED RESEARCH INTERNATIONAL. VOL. . ISSUE . P. - 38 95% 4
9 FARO, A , GIORDANO, D , SPAMPINATO, C , (2012) COMBINING LITERATURE TEXT MINING WITH MICROARRAY DATA: ADVANCES FOR SYSTEM BIOLOGY MODELING.BRIEFINGS IN BIOINFORMATICS. VOL. 13. ISSUE 1. P. 61-82 53 66% 19
10 FLEUREN, WWM , ALKEMA, W , (2015) APPLICATION OF TEXT MINING IN THE BIOMEDICAL DOMAIN.METHODS. VOL. 74. ISSUE . P. 97 -106 54 55% 10

Classes with closest relation at Level 1


Rank Class id link
1 7708 JOURNAL OF THE AMERICAN MEDICAL INFORMATICS ASSOCIATION//NATURAL LANGUAGE PROCESSING//BIOMED INFORMAT
2 10975 GENE PRIORITIZATION//DISEASE GENE PREDICTION//HUMAN DISEASE NETWORK
3 3139 JOURNAL OF THE AMERICAN MEDICAL INFORMATICS ASSOCIATION//SNOMED CT//MEDICAL INFORMATICS
4 18864 DATABASE LIFE SCI//DDBJ//EMTRAIN
5 21978 NAT LANGUAGE PROC INFORMAT SYST GRP//SEMANTIC ROLE LABELING//TIMEML
6 9301 WORDNET//WORD SENSE DISAMBIGUATION//SEMANTIC SIMILARITY
7 35708 TREE KERNELS//RATIONAL KERNELS//STRING KERNELS
8 9574 GENE SET ANALYSIS//GENE ONTOLOGY//BMC BIOINFORMATICS
9 6856 NETWORK PHARMACOLOGY//DRUG REPOSITIONING//SYSTEMS PHARMACOLOGY
10 9683 EMBL OUTSTN//LECTURE NOTES IN BIOINFORMATICS//PROT INFORMAT OURCE

Go to start page