Class information for:
Level 1: BETA HAIRPIN//TRP CAGE//SIDE CHAIN INTERACTIONS

Basic class information
Class id #P Avg. number of
references		 Database coverage
of references
13680 820 47.7 87%


Bar chart of Publication_year

Last years might be incomplete

Hierarchy of classes
The table includes all classes above and classes immediately below the current class.


Cluster id Level Cluster label #P
0 4 BIOCHEMISTRY & MOLECULAR BIOLOGY//CELL BIOLOGY//ONCOLOGY 4064930
219 3       PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS//PROTEIN FOLDING//PROTEIN STRUCTURE PREDICTION 50409
260 2             PROTEIN FOLDING//JOURNAL OF CHEMICAL THEORY AND COMPUTATION//JOURNAL OF COMPUTATIONAL CHEMISTRY 19582
13680 1                   BETA HAIRPIN//TRP CAGE//SIDE CHAIN INTERACTIONS 820

Terms with highest relevance score


rank Term termType Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 BETA HAIRPIN authKW 1744397 12% 48% 98
2 TRP CAGE authKW 310293 2% 56% 15
3 SIDE CHAIN INTERACTIONS authKW 198583 1% 44% 12
4 BETA HAIRPIN PEPTIDE authKW 186174 1% 50% 10
5 BETANOVA authKW 155152 1% 83% 5
6 TRPZIP2 authKW 119156 0% 80% 4
7 B3 DOMAIN OF PROTEIN G authKW 116361 1% 63% 5
8 BETA HAIRPIN CONFORMATION authKW 116361 1% 63% 5
9 SOPHISTICATED RUMENTAT IL address 116361 1% 63% 5
10 BETA SHEET authKW 94243 4% 8% 33

Web of Science journal categories


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 Biophysics 2732 21% 0% 176
2 Biochemistry & Molecular Biology 2569 47% 0% 386
3 Chemistry, Multidisciplinary 1130 26% 0% 211
4 Chemistry, Physical 575 20% 0% 164
5 Physics, Atomic, Molecular & Chemical 401 10% 0% 81
6 Chemistry, Organic 43 5% 0% 41
7 Biochemical Research Methods 31 3% 0% 25
8 Mathematical & Computational Biology 25 1% 0% 11
9 Chemistry, Medicinal 18 2% 0% 18
10 Computer Science, Interdisciplinary Applications 5 1% 0% 11

Address terms


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 SOPHISTICATED RUMENTAT IL 116361 1% 63% 5
2 BIOPOLYMER STRUCT 79321 1% 30% 7
3 BASIC MED SCI NEUROSCI SENSE ORGANS SMBNOS 74474 0% 100% 2
4 SUPERCOMPUTAT MAT 74474 0% 100% 2
5 INTER EGIATE BIOTECHOL 49648 0% 67% 2
6 UNIV GDANSK 44675 1% 20% 6
7 BIOMED EXCELLENCE STRUCT FUNCT GENOMICS 37237 0% 100% 1
8 BIOMED EXCELLENCE STRUCT FUNT GENOM 37237 0% 100% 1
9 BIOMED STRUCT MODELLING UNIT 37237 0% 100% 1
10 BIOMOL PHYS MOL MODELING GRP 37237 0% 100% 1

Journals


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS 15736 6% 1% 52
2 BIOPOLYMERS 10075 5% 1% 42
3 PROTEIN SCIENCE 8086 5% 1% 37
4 JOURNAL OF THE AMERICAN CHEMICAL SOCIETY 4119 12% 0% 102
5 JOURNAL OF PHYSICAL CHEMISTRY B 2463 6% 0% 51
6 JOURNAL OF MOLECULAR BIOLOGY 2139 5% 0% 37
7 JOURNAL OF PEPTIDE SCIENCE 1310 1% 0% 8
8 JOURNAL OF CHEMICAL THEORY AND COMPUTATION 1147 1% 0% 12
9 JOURNAL OF PEPTIDE RESEARCH 1006 1% 1% 5
10 BIOCHEMISTRY 903 5% 0% 37

Author Key Words


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class		 LCSH search Wikipedia search
1 BETA HAIRPIN 1744397 12% 48% 98 Search BETA+HAIRPIN Search BETA+HAIRPIN
2 TRP CAGE 310293 2% 56% 15 Search TRP+CAGE Search TRP+CAGE
3 SIDE CHAIN INTERACTIONS 198583 1% 44% 12 Search SIDE+CHAIN+INTERACTIONS Search SIDE+CHAIN+INTERACTIONS
4 BETA HAIRPIN PEPTIDE 186174 1% 50% 10 Search BETA+HAIRPIN+PEPTIDE Search BETA+HAIRPIN+PEPTIDE
5 BETANOVA 155152 1% 83% 5 Search BETANOVA Search BETANOVA
6 TRPZIP2 119156 0% 80% 4 Search TRPZIP2 Search TRPZIP2
7 B3 DOMAIN OF PROTEIN G 116361 1% 63% 5 Search B3+DOMAIN+OF+PROTEIN+G Search B3+DOMAIN+OF+PROTEIN+G
8 BETA HAIRPIN CONFORMATION 116361 1% 63% 5 Search BETA+HAIRPIN+CONFORMATION Search BETA+HAIRPIN+CONFORMATION
9 BETA SHEET 94243 4% 8% 33 Search BETA+SHEET Search BETA+SHEET
10 BETA TURN 91970 3% 9% 27 Search BETA+TURN Search BETA+TURN

Core articles
The table includes core articles in the class. The following variables is taken into account for the relevance score of an article in a cluster c:
(1) Number of references referring to publications in the class.
(2) Share of total number of active references referring to publications in the class.
(3) Age of the article. New articles get higher score than old articles.
(4) Citation rate, normalized to year.


Rank Reference # ref.
in cl.		 Shr. of ref. in
cl.		 Citations
1 ANDERSON, JM , KIER, BL , JURBAN, B , BYRNE, A , SHU, I , EIDENSCHINK, LA , SHCHERBAKOV, AA , HUDSON, M , FESINMEYER, RM , ANDERSEN, NH , (2016) ARYL-ARYL INTERACTIONS IN DESIGNED PEPTIDE FOLDS: SPECTROSCOPIC CHARACTERISTICS AND OPTIMAL PLACEMENT FOR STRUCTURE STABILIZATION.BIOPOLYMERS. VOL. 105. ISSUE 6. P. 337 -356 41 84% 1
2 SANTIVERI, CM , JIMENEZ, MA , (2010) TRYPTOPHAN RESIDUES: SCARCE IN PROTEINS BUT STRONG STABILIZERS OF BETA-HAIRPIN PEPTIDES.BIOPOLYMERS. VOL. 94. ISSUE 6. P. 779 -790 63 60% 29
3 ZERZE, GH , UZ, B , MITTAL, J , (2015) FOLDING THERMODYNAMICS OF BETA-HAIRPINS STUDIED BY REPLICA-EXCHANGE MOLECULAR DYNAMICS SIMULATIONS.PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS. VOL. 83. ISSUE 7. P. 1307 -1315 47 73% 2
4 SANTIVERI, CM , LEON, E , RICO, M , JIMENEZ, MA , (2008) CONTEXT-DEPENDENCE OF THE CONTIRIBUTION OF DISULFIDE BONDS TO BETA-HAIRPIN STABILITY.CHEMISTRY-A EUROPEAN JOURNAL. VOL. 14. ISSUE 2. P. 488 -499 55 68% 34
5 MUNOZ, V , GHIRLANDO, R , BLANCO, FJ , JAS, GS , HOFRICHTER, J , EATON, WA , (2006) FOLDING AND AGGREGATION KINETICS OF A BETA-HAIRPIN.BIOCHEMISTRY. VOL. 45. ISSUE 23. P. 7023 -7035 63 59% 54
6 LEWANDOWSKA, A , OLDZIEJ, S , LIWO, A , SCHERAGA, HA , (2010) BETA-HAIRPIN-FORMING PEPTIDES; MODELS OF EARLY STAGES OF PROTEIN FOLDING.BIOPHYSICAL CHEMISTRY. VOL. 151. ISSUE 1-2. P. 1-9 43 78% 27
7 HUDSON, FM , ANDERSEN, NH , (2006) MEASURING COOPERATIVITY IN THE FORMATION OF A THREE-STRANDED BETA SHEET (DOUBLE HAIRPIN).BIOPOLYMERS. VOL. 83. ISSUE 4. P. 424-433 40 95% 2
8 DHANASEKARAN, M , PRAKASH, O , GONG, XX , BAURES, PW , (2004) EXPECTED AND UNEXPECTED RESULTS FROM COMBINED BETA-HAIRPIN DESIGN ELEMENTS.ORGANIC & BIOMOLECULAR CHEMISTRY. VOL. 2. ISSUE 14. P. 2071-2082 61 65% 7
9 WU, L , MCELHENY, D , TAKEKIYO, T , KEIDERLING, TA , (2010) GEOMETRY AND EFFICACY OF CROSS-STRAND TRP/TRP, TRP/TYR, AND TYR/TYR AROMATIC INTERACTION IN A BETA-HAIRPIN PEPTIDE.BIOCHEMISTRY. VOL. 49. ISSUE 22. P. 4705-4714 42 74% 31
10 ANDERSEN, NH , OLSEN, KA , FESINMEYER, RM , TAN, X , HUDSON, FM , EIDENSCHINK, LA , FARAZI, SR , (2006) MINIMIZATION AND OPTIMIZATION OF DESIGNED BETA-HAIRPIN FOLDS.JOURNAL OF THE AMERICAN CHEMICAL SOCIETY. VOL. 128. ISSUE 18. P. 6101-6110 42 76% 50

Classes with closest relation at Level 1


Rank Class id link
1 7436 ALPHA HELIX//ALPHA HELIX STABILITY//N CAP
2 8058 GENERALIZED ENSEMBLE ALGORITHM//REPLICA EXCHANGE METHOD//MULTICANONICAL MOLECULAR DYNAMICS
3 573 PROTEIN FOLDING//PHI VALUE//FOLDING RATE
4 37505 14 RESIDUE PEPTIDES//AMIDE TO E OLEFIN MUTATION//AMIDE TO ESTER MUTATION
5 6749 MARKOV STATE MODEL//ENHANCED SAMPLING//TRANSITION PATH SAMPLING
6 12385 BETA TURN MIMETIC//PEPTIDOMIMETICS//BICYCLIC DIPEPTIDE
7 19037 BIOMAG BANK//PROT DATA BANK EUROPE//CHEMICAL SHIFT
8 6361 BETA PEPTIDES//BETA AMINO ACIDS//FOLDAMERS
9 5549 COILED COIL//PROTEIN DESIGN//DE NOVO DESIGN
10 13291 COMPUTATIONAL PROTEIN DESIGN//PROTEIN DESIGN//DEAD END ELIMINATION

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