Class information for:
Level 1: COILED COIL//PROTEIN DESIGN//DE NOVO DESIGN

Basic class information
Class id #P Avg. number of
references		 Database coverage
of references
5549 1607 47.1 82%


Bar chart of Publication_year

Last years might be incomplete

Hierarchy of classes
The table includes all classes above and classes immediately below the current class.


Cluster id Level Cluster label #P
0 4 BIOCHEMISTRY & MOLECULAR BIOLOGY//CELL BIOLOGY//ONCOLOGY 4064930
219 3       PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS//PROTEIN FOLDING//PROTEIN STRUCTURE PREDICTION 50409
2636 2             COILED COIL//KRAB DOMAIN//PROTEIN DESIGN 3515
5549 1                   COILED COIL//PROTEIN DESIGN//DE NOVO DESIGN 1607

Terms with highest relevance score


rank Term termType Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 COILED COIL authKW 750914 11% 23% 173
2 PROTEIN DESIGN authKW 387014 8% 15% 134
3 DE NOVO DESIGN authKW 347333 4% 29% 64
4 FOUR HELIX BUNDLE authKW 270899 2% 39% 37
5 PROTEIN DE NOVO DESIGN authKW 191579 1% 92% 11
6 TEMPLATE ASSEMBLED SYNTHETIC PROTEINS authKW 182393 1% 80% 12
7 LEUCINE ZIPPER authKW 182109 4% 16% 61
8 DE NOVO PROTEINS authKW 155153 1% 58% 14
9 JOHNSON FDN address 150791 4% 13% 62
10 BIOL BIOCHEM 2 address 142483 1% 50% 15

Web of Science journal categories


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 Biochemistry & Molecular Biology 7820 57% 0% 921
2 Biophysics 2390 15% 0% 237
3 Chemistry, Multidisciplinary 1931 24% 0% 390
4 Biochemical Research Methods 370 6% 0% 96
5 Chemistry, Organic 257 7% 0% 118
6 Cell Biology 124 7% 0% 106
7 Chemistry, Medicinal 45 2% 0% 38
8 Chemistry, Inorganic & Nuclear 44 3% 0% 48
9 Biotechnology & Applied Microbiology 16 3% 0% 47
10 Polymer Science 14 2% 0% 39

Address terms


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 JOHNSON FDN 150791 4% 13% 62
2 BIOL BIOCHEM 2 142483 1% 50% 15
3 BIOMOL DESIGN DRUG DEV 71828 1% 34% 11
4 BCH DORIGNY 65670 1% 31% 11
5 ORGAN CHEM BCH DORIGNY 38000 0% 100% 2
6 ABT MOL EVOLUT GENOM 19000 0% 100% 1
7 ANAL SUPRAMOL SELF ASSEMBLY 19000 0% 100% 1
8 BIOCHEM BIOPHYS S964 19000 0% 100% 1
9 BIOCHEM BIOPHYSIOL 19000 0% 100% 1
10 BIOCRYSTALLOG EXCELLENCE 19000 0% 100% 1

Journals


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 FOLDING & DESIGN 21014 1% 8% 14
2 PROTEIN SCIENCE 16957 5% 1% 75
3 PROTEIN ENGINEERING 7023 2% 1% 29
4 BIOPOLYMERS 6675 3% 1% 48
5 JOURNAL OF THE AMERICAN CHEMICAL SOCIETY 6216 11% 0% 176
6 BIOCHEMISTRY 5258 8% 0% 123
7 JOURNAL OF MOLECULAR BIOLOGY 4249 5% 0% 73
8 JOURNAL OF STRUCTURAL BIOLOGY 3121 1% 1% 24
9 CURRENT OPINION IN STRUCTURAL BIOLOGY 2981 1% 1% 19
10 PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS 2288 2% 0% 28

Author Key Words


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class		 LCSH search Wikipedia search
1 COILED COIL 750914 11% 23% 173 Search COILED+COIL Search COILED+COIL
2 PROTEIN DESIGN 387014 8% 15% 134 Search PROTEIN+DESIGN Search PROTEIN+DESIGN
3 DE NOVO DESIGN 347333 4% 29% 64 Search DE+NOVO+DESIGN Search DE+NOVO+DESIGN
4 FOUR HELIX BUNDLE 270899 2% 39% 37 Search FOUR+HELIX+BUNDLE Search FOUR+HELIX+BUNDLE
5 PROTEIN DE NOVO DESIGN 191579 1% 92% 11 Search PROTEIN+DE+NOVO+DESIGN Search PROTEIN+DE+NOVO+DESIGN
6 TEMPLATE ASSEMBLED SYNTHETIC PROTEINS 182393 1% 80% 12 Search TEMPLATE+ASSEMBLED+SYNTHETIC+PROTEINS Search TEMPLATE+ASSEMBLED+SYNTHETIC+PROTEINS
7 LEUCINE ZIPPER 182109 4% 16% 61 Search LEUCINE+ZIPPER Search LEUCINE+ZIPPER
8 DE NOVO PROTEINS 155153 1% 58% 14 Search DE+NOVO+PROTEINS Search DE+NOVO+PROTEINS
9 4 ALPHA HELIX BUNDLE 135108 0% 89% 8 Search 4+ALPHA+HELIX+BUNDLE Search 4+ALPHA+HELIX+BUNDLE
10 MAQUETTE 135108 0% 89% 8 Search MAQUETTE Search MAQUETTE

Core articles
The table includes core articles in the class. The following variables is taken into account for the relevance score of an article in a cluster c:
(1) Number of references referring to publications in the class.
(2) Share of total number of active references referring to publications in the class.
(3) Age of the article. New articles get higher score than old articles.
(4) Citation rate, normalized to year.


Rank Reference # ref. in
cl.		 Shr. of ref. in
cl.		 Citations
1 WOOLFSON, DN , (2005) THE DESIGN OF COILED-COIL STRUCTURES AND ASSEMBLIES.FIBROUS PROTEINS: COILED-COILS, COLLAGEN AND ELASTOMERS. VOL. 70. ISSUE . P. 79 -+ 92 76% 291
2 ZASTROW, ML , PECORARO, VL , (2013) DESIGNING FUNCTIONAL METALLOPROTEINS: FROM STRUCTURAL TO CATALYTIC METAL SITES.COORDINATION CHEMISTRY REVIEWS. VOL. 257. ISSUE 17-18. P. 2565-2588 103 53% 35
3 YU, FT , CANGELOSI, VM , ZASTROW, ML , TEGONI, M , PLEGARIA, JS , TEBO, AG , MOCNY, CS , RUCKTHONG, L , QAYYUM, H , PECORARO, VL , (2014) PROTEIN DESIGN: TOWARD FUNCTIONAL METALLOENZYMES.CHEMICAL REVIEWS. VOL. 114. ISSUE 7. P. 3495 -3578 181 20% 97
4 APOSTOLOVIC, B , DANIAL, M , KLOK, HA , (2010) COILED COILS: ATTRACTIVE PROTEIN FOLDING MOTIFS FOR THE FABRICATION OF SELF-ASSEMBLED, RESPONSIVE AND BIOACTIVE MATERIALS.CHEMICAL SOCIETY REVIEWS. VOL. 39. ISSUE 9. P. 3541 -3575 98 51% 102
5 MASON, JM , ARNDT, KM , (2004) COILED COIL DOMAINS: STABILITY, SPECIFICITY, AND BIOLOGICAL IMPLICATIONS.CHEMBIOCHEM. VOL. 5. ISSUE 2. P. 170 -176 59 81% 331
6 TAKEI, T , TSUMOTO, K , YOSHINO, M , KOJIMA, S , YAZAKI, K , UEDA, T , TAKEI, T , ARISAKA, F , MIURA, K , (2014) ROLE OF POSITIONS E AND G IN THE FIBROUS ASSEMBLY FORMATION OF AN AMPHIPATHIC ALPHA-HELIX-FORMING POLYPEPTIDE.BIOPOLYMERS. VOL. 102. ISSUE 3. P. 260-272 60 87% 0
7 TAKEI, T , HASEGAWA, K , IMADA, K , NAMBA, K , TSUMOTO, K , KURIKI, Y , YOSHINO, M , YAZAKI, K , KOJIMA, S , TAKEI, T , ET AL (2013) EFFECTS OF CHAIN LENGTH OF AN AMPHIPATHIC POLYPEPTIDE CARRYING THE REPEATED AMINO ACID SEQUENCE (LETLAKA)(N) ON ALPHA-HELIX AND FIBROUS ASSEMBLY FORMATION.BIOCHEMISTRY. VOL. 52. ISSUE 16. P. 2810-2820 58 84% 1
8 TEGONI, M , (2014) DE NOVO DESIGNED COPPER A- HELICAL PEPTIDES: FROM DESIGN TO FUNCTION.EUROPEAN JOURNAL OF INORGANIC CHEMISTRY. VOL. 2014. ISSUE 13. P. 2177 -2193 93 50% 3
9 DEGRADO, WF , SUMMA, CM , PAVONE, V , NASTRI, F , LOMBARDI, A , (1999) DE NOVO DESIGN AND STRUCTURAL CHARACTERIZATION OF PROTEINS AND METALLOPROTEINS.ANNUAL REVIEW OF BIOCHEMISTRY. VOL. 68. ISSUE . P. 779 -819 113 40% 428
10 REEDY, CJ , GIBNEY, BR , (2004) HEME PROTEIN ASSEMBLIES.CHEMICAL REVIEWS. VOL. 104. ISSUE 2. P. 617-649 118 36% 181

Classes with closest relation at Level 1


Rank Class id link
1 27495 UM SYLVESTER BRAMAN FAMILY BREAST CANC//GCN4P//DNA PROMOTER ELEMENTS TRE AND CRE
2 13291 COMPUTATIONAL PROTEIN DESIGN//PROTEIN DESIGN//DEAD END ELIMINATION
3 27924 HIGH INTENS XRAY DIFFRACT//ARTIFICIAL SELENOENZYME//BIOELECTRONIS
4 25941 BETA SHEET RANDOM COIL TRANSITION//HOMOPOLYPEPTIDE CHAIN//2 VIRIAL COEF
5 7436 ALPHA HELIX//ALPHA HELIX STABILITY//N CAP
6 19390 ARTIFICIAL METALLOENZYMES//BIOHYBRID CATALYSIS//CHEMOGENETIC OPTIMIZATION
7 13680 BETA HAIRPIN//TRP CAGE//SIDE CHAIN INTERACTIONS
8 37505 14 RESIDUE PEPTIDES//AMIDE TO E OLEFIN MUTATION//AMIDE TO ESTER MUTATION
9 15175 STAPHYLOCOCCAL NUCLEASE//THERMODYNAMIC MOLECULAR SWITCH//T4 LYSOZYME
10 15710 ALPHA HELIX MIMETICS//STAPLED PEPTIDES//PROTEOMIMETICS

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