Class information for:
Level 1: GENE REGULATORY NETWORK//NETWORK INFERENCE//REVERSE ENGINEERING

Basic class information
Class id #P Avg. number of
references		 Database coverage
of references
6275 1505 40.6 72%


Bar chart of Publication_year

Last years might be incomplete

Hierarchy of classes
The table includes all classes above and classes immediately below the current class.


Cluster id Level Cluster label #P
0 4 BIOCHEMISTRY & MOLECULAR BIOLOGY//CELL BIOLOGY//ONCOLOGY 4064930
90 3       MATHEMATICAL & COMPUTATIONAL BIOLOGY//BIOINFORMATICS//BMC BIOINFORMATICS 77178
548 2             BMC SYSTEMS BIOLOGY//MATHEMATICAL & COMPUTATIONAL BIOLOGY//BOOLEAN NETWORKS 14655
6275 1                   GENE REGULATORY NETWORK//NETWORK INFERENCE//REVERSE ENGINEERING 1505

Terms with highest relevance score


rank Term termType Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 GENE REGULATORY NETWORK authKW 612258 11% 19% 163
2 NETWORK INFERENCE authKW 332799 3% 37% 44
3 REVERSE ENGINEERING authKW 127950 6% 8% 83
4 DREAM CHALLENGE authKW 121726 0% 100% 6
5 MATHEMATICAL & COMPUTATIONAL BIOLOGY WoSSC 117554 51% 1% 769
6 GENE NETWORKS authKW 115944 4% 10% 57
7 GENE NETWORK INFERENCE authKW 91291 0% 75% 6
8 BMC SYSTEMS BIOLOGY journal 87084 6% 5% 83
9 GENE REGULATORY NETWORK INFERENCE authKW 81150 0% 100% 4
10 BIOINFORMATICS journal 80854 14% 2% 206

Web of Science journal categories


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 Mathematical & Computational Biology 117554 51% 1% 769
2 Biochemical Research Methods 21942 40% 0% 605
3 Biotechnology & Applied Microbiology 13811 41% 0% 612
4 Statistics & Probability 2144 10% 0% 145
5 Computer Science, Interdisciplinary Applications 1448 9% 0% 134
6 Genetics & Heredity 766 11% 0% 160
7 Computer Science, Artificial Intelligence 569 6% 0% 85
8 Biology 418 5% 0% 81
9 Biochemistry & Molecular Biology 271 15% 0% 233
10 Mathematics, Interdisciplinary Applications 262 3% 0% 52

Address terms


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 COMPUTAT BIOL MACHINE LEARNING 76173 1% 29% 13
2 SYST BIOL BIOCHEM MOL BIOPHYS 60863 0% 100% 3
3 BIOENVIRONM INTEGRAT BIOSCI 40575 0% 100% 2
4 JBI 36515 0% 60% 3
5 KNOWLEDGE DISCOVERY BIOINFORMAT GRP 30428 0% 50% 3
6 JOINT SYST BIOL 29496 1% 18% 8
7 COMPUTAT ASTROBIOL FUNDAMENTAL BIOL 27049 0% 67% 2
8 INFECT DIS MOL MEDMED 27049 0% 67% 2
9 INFORMAT DECIS ALGORITHMS S 27049 0% 67% 2
10 BONN AACHEN INT IT 26075 0% 21% 6

Journals


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 BMC SYSTEMS BIOLOGY 87084 6% 5% 83
2 BIOINFORMATICS 80854 14% 2% 206
3 BMC BIOINFORMATICS 52159 9% 2% 139
4 IET SYSTEMS BIOLOGY 38146 2% 8% 25
5 IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS 36270 3% 4% 45
6 JOURNAL OF COMPUTATIONAL BIOLOGY 18741 3% 2% 38
7 STATISTICAL APPLICATIONS IN GENETICS AND MOLECULAR BIOLOGY 12982 1% 4% 18
8 INTERNATIONAL JOURNAL OF DATA MINING AND BIOINFORMATICS 4688 1% 2% 10
9 JOURNAL OF BIOINFORMATICS AND COMPUTATIONAL BIOLOGY 4472 1% 2% 9
10 IEE PROCEEDINGS SYSTEMS BIOLOGY 3903 0% 5% 4

Author Key Words


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class		 LCSH search Wikipedia search
1 GENE REGULATORY NETWORK 612258 11% 19% 163 Search GENE+REGULATORY+NETWORK Search GENE+REGULATORY+NETWORK
2 NETWORK INFERENCE 332799 3% 37% 44 Search NETWORK+INFERENCE Search NETWORK+INFERENCE
3 REVERSE ENGINEERING 127950 6% 8% 83 Search REVERSE+ENGINEERING Search REVERSE+ENGINEERING
4 DREAM CHALLENGE 121726 0% 100% 6 Search DREAM+CHALLENGE Search DREAM+CHALLENGE
5 GENE NETWORKS 115944 4% 10% 57 Search GENE+NETWORKS Search GENE+NETWORKS
6 GENE NETWORK INFERENCE 91291 0% 75% 6 Search GENE+NETWORK+INFERENCE Search GENE+NETWORK+INFERENCE
7 GENE REGULATORY NETWORK INFERENCE 81150 0% 100% 4 Search GENE+REGULATORY+NETWORK+INFERENCE Search GENE+REGULATORY+NETWORK+INFERENCE
8 MULTIPLE CHANGEPOINT PROCESS 60863 0% 100% 3 Search MULTIPLE+CHANGEPOINT+PROCESS Search MULTIPLE+CHANGEPOINT+PROCESS
9 NESTED EFFECTS MODELS 60863 0% 100% 3 Search NESTED+EFFECTS+MODELS Search NESTED+EFFECTS+MODELS
10 NETGENERATOR 60863 0% 100% 3 Search NETGENERATOR Search NETGENERATOR

Core articles
The table includes core articles in the class. The following variables is taken into account for the relevance score of an article in a cluster c:
(1) Number of references referring to publications in the class.
(2) Share of total number of active references referring to publications in the class.
(3) Age of the article. New articles get higher score than old articles.
(4) Citation rate, normalized to year.


Rank Reference # ref.
in cl.		 Shr. of ref. in
cl.		 Citations
1 LIU, ZP , (2015) REVERSE ENGINEERING OF GENOME-WIDE GENE REGULATORY NETWORKS FROM GENE EXPRESSION DATA.CURRENT GENOMICS. VOL. 16. ISSUE 1. P. 3 -22 81 49% 9
2 LINDE, J , SCHULZE, S , HENKEL, SG , GUTHKE, R , (2015) DATA-AND KNOWLEDGE-BASED MODELING OF GENE REGULATORY NETWORKS: AN UPDATE.EXCLI JOURNAL. VOL. 14. ISSUE . P. 346 -378 79 55% 2
3 HECKER, M , LAMBECK, S , TOEPFER, S , VAN SOMEREN, E , GUTHKE, R , (2009) GENE REGULATORY NETWORK INFERENCE: DATA INTEGRATION IN DYNAMIC MODELS-A REVIEW.BIOSYSTEMS. VOL. 96. ISSUE 1. P. 86 -103 46 61% 238
4 VASHISHTHA, S , BRODERICK, G , CRADDOCK, TJA , FLETCHER, MA , KLIMAS, NG , (2015) INFERRING BROAD REGULATORY BIOLOGY FROM TIME COURSE DATA: HAVE WE REACHED AN UPPER BOUND UNDER CONSTRAINTS TYPICAL OF IN VIVO STUDIES?.PLOS ONE. VOL. 10. ISSUE 5. P. - 50 72% 1
5 LIU, LZ , WU, FX , ZHANG, WJ , (2012) REVERSE ENGINEERING OF GENE REGULATORY NETWORKS FROM BIOLOGICAL DATA.WILEY INTERDISCIPLINARY REVIEWS-DATA MINING AND KNOWLEDGE DISCOVERY. VOL. 2. ISSUE 5. P. 365 -385 48 75% 2
6 HE, F , BALLING, R , ZENG, AP , (2009) REVERSE ENGINEERING AND VERIFICATION OF GENE NETWORKS: PRINCIPLES, ASSUMPTIONS, AND LIMITATIONS OF PRESENT METHODS AND FUTURE PERSPECTIVES.JOURNAL OF BIOTECHNOLOGY. VOL. 144. ISSUE 3. P. 190 -203 57 50% 38
7 ZHANG, XJ , LIU, KQ , LIU, ZP , DUVAL, B , RICHER, JM , ZHAO, XM , HAO, JK , CHEN, LN , (2013) NARROMI: A NOISE AND REDUNDANCY REDUCTION TECHNIQUE IMPROVES ACCURACY OF GENE REGULATORY NETWORK INFERENCE.BIOINFORMATICS. VOL. 29. ISSUE 1. P. 106-113 32 76% 29
8 LIU, F , ZHANG, SW , GUO, WF , WEI, ZG , CHEN, LN , (2016) INFERENCE OF GENE REGULATORY NETWORK BASED ON LOCAL BAYESIAN NETWORKS.PLOS COMPUTATIONAL BIOLOGY. VOL. 12. ISSUE 8. P. - 39 67% 0
9 SIMA, C , HUA, JP , JUNG, SW , (2009) INFERENCE OF GENE REGULATORY NETWORKS USING TIME-SERIES DATA: A SURVEY.CURRENT GENOMICS. VOL. 10. ISSUE 6. P. 416-429 44 62% 37
10 STUDHAM, ME , TJARNBERG, A , NORDLING, TEM , NELANDER, S , SONNHAMMER, ELL , (2014) FUNCTIONAL ASSOCIATION NETWORKS AS PRIORS FOR GENE REGULATORY NETWORK INFERENCE.BIOINFORMATICS. VOL. 30. ISSUE 12. P. 130 -138 30 81% 5

Classes with closest relation at Level 1


Rank Class id link
1 7323 BICLUSTERING//GENE EXPRESSION DATA//GENE EXPRESSION DATA ANALYSIS
2 5632 BOOLEAN NETWORKS//SEMI TENSOR PRODUCT//BOOLEAN CONTROL NETWORK
3 21530 NETWORK MOTIFS//SUBGRAPH SAMPLING//PROGRAMA GENOM COMPUTAC
4 20966 DYNAMICAL NETWORK BIOMARKER//EDGE BIOMARKER//ABORAT INNOVAT MATH MODELLING
5 23966 GENETIC REGULATORY NETWORKS//GENETIC REGULATORY NETWORKS GRNS//DISCRETE TIME GENETIC REGULATORY NETWORK
6 2111 MOTIF DISCOVERY//TRANSCRIPTION FACTOR BINDING SITE//MOTIF FINDING
7 9073 GAUSSIAN GRAPHICAL MODEL//GRAPHICAL MODELS//CONDITIONAL INDEPENDENCE
8 681 PROTEIN INTERACTION NETWORK//PROTEIN PROTEIN INTERACTION NETWORK//ESSENTIAL PROTEINS
9 19900 GENE INDEXED MUTANT//NAA PLANT SOIL NUTR UNIT//ORYZABASE
10 12036 START//MBF//SIC1

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