Class information for:
Level 1: UM SYLVESTER BRAMAN FAMILY BREAST CANC//GCN4P//DNA PROMOTER ELEMENTS TRE AND CRE

Basic class information
Class id #P Avg. number of
references		 Database coverage
of references
27495 228 40.5 86%


Bar chart of Publication_year

Last years might be incomplete

Hierarchy of classes
The table includes all classes above and classes immediately below the current class.


Cluster id Level Cluster label #P
0 4 BIOCHEMISTRY & MOLECULAR BIOLOGY//CELL BIOLOGY//ONCOLOGY 4064930
219 3       PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS//PROTEIN FOLDING//PROTEIN STRUCTURE PREDICTION 50409
2636 2             COILED COIL//KRAB DOMAIN//PROTEIN DESIGN 3515
27495 1                   UM SYLVESTER BRAMAN FAMILY BREAST CANC//GCN4P//DNA PROMOTER ELEMENTS TRE AND CRE 228

Terms with highest relevance score


rank Term termType Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 UM SYLVESTER BRAMAN FAMILY BREAST CANC address 306116 2% 57% 4
2 GCN4P authKW 304374 2% 45% 5
3 DNA PROMOTER ELEMENTS TRE AND CRE authKW 267854 1% 100% 2
4 TRANSCRIPTION FACTORS JUN AND FOS authKW 267854 1% 100% 2
5 BASIC REGION authKW 238088 2% 44% 4
6 BZIP DOMAIN authKW 214278 2% 40% 4
7 CHANGE OF SPECIFICITY authKW 178568 1% 67% 2
8 YEAST GCN4 authKW 178568 1% 67% 2
9 GCN4 authKW 143990 4% 11% 10
10 ALANINE SCANNING MUTANT authKW 133927 0% 100% 1

Web of Science journal categories


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 Biochemistry & Molecular Biology 1374 63% 0% 144
2 Chemistry, Multidisciplinary 226 22% 0% 51
3 Cell Biology 176 16% 0% 36
4 Biophysics 82 8% 0% 18
5 Chemistry, Medicinal 76 6% 0% 14
6 Chemistry, Organic 58 9% 0% 20
7 Biochemical Research Methods 9 3% 0% 7
8 Chemistry, Analytical 0 2% 0% 5
9 Mathematical & Computational Biology 0 0% 0% 1
10 Spectroscopy 0 1% 0% 2

Address terms


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 UM SYLVESTER BRAMAN FAMILY BREAST CANC 306116 2% 57% 4
2 BIOMATER BIOMED ENGN 133927 0% 100% 1
3 BIOMOL GRP QUIM 133927 0% 100% 1
4 BIOSCI NUTR BIONUT 133927 0% 100% 1
5 GENET MOL DESARROLLO EVOLUT PLANTAS 133927 0% 100% 1
6 SINGULAR INVEST QUIM BIOL MAT MOL CIQUS 131172 5% 8% 12
7 GRP INVEST BIOFARMA PLATAFORMA SCREENING USEF 66963 0% 50% 1
8 MIKROBIOL BIOL MED 66963 0% 50% 1
9 SCI BIOTENOL 66963 0% 50% 1
10 SIBERIAN V 66963 0% 50% 1

Journals


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 MOLECULAR BIOLOGY 1389 3% 0% 7
2 CHEMBIOCHEM 1076 3% 0% 6
3 CHEMICAL SCIENCE 857 2% 0% 5
4 BIOCHEMISTRY 795 8% 0% 18
5 NUCLEIC ACIDS RESEARCH 556 6% 0% 13
6 CURRENT OPINION IN STRUCTURAL BIOLOGY 525 1% 0% 3
7 GENE EXPRESSION 398 0% 0% 1
8 JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS 379 1% 0% 3
9 NATURE STRUCTURAL BIOLOGY 336 1% 0% 2
10 CHEMICAL COMMUNICATIONS 300 4% 0% 10

Author Key Words


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class		 LCSH search Wikipedia search
1 GCN4P 304374 2% 45% 5 Search GCN4P Search GCN4P
2 DNA PROMOTER ELEMENTS TRE AND CRE 267854 1% 100% 2 Search DNA+PROMOTER+ELEMENTS+TRE+AND+CRE Search DNA+PROMOTER+ELEMENTS+TRE+AND+CRE
3 TRANSCRIPTION FACTORS JUN AND FOS 267854 1% 100% 2 Search TRANSCRIPTION+FACTORS+JUN+AND+FOS Search TRANSCRIPTION+FACTORS+JUN+AND+FOS
4 BASIC REGION 238088 2% 44% 4 Search BASIC+REGION Search BASIC+REGION
5 BZIP DOMAIN 214278 2% 40% 4 Search BZIP+DOMAIN Search BZIP+DOMAIN
6 CHANGE OF SPECIFICITY 178568 1% 67% 2 Search CHANGE+OF+SPECIFICITY Search CHANGE+OF+SPECIFICITY
7 YEAST GCN4 178568 1% 67% 2 Search YEAST+GCN4 Search YEAST+GCN4
8 GCN4 143990 4% 11% 10 Search GCN4 Search GCN4
9 ALANINE SCANNING MUTANT 133927 0% 100% 1 Search ALANINE+SCANNING+MUTANT Search ALANINE+SCANNING+MUTANT
10 ALPHA AND BETA HAIRPINS 133927 0% 100% 1 Search ALPHA+AND+BETA+HAIRPINS Search ALPHA+AND+BETA+HAIRPINS

Core articles
The table includes core articles in the class. The following variables is taken into account for the relevance score of an article in a cluster c:
(1) Number of references referring to publications in the class.
(2) Share of total number of active references referring to publications in the class.
(3) Age of the article. New articles get higher score than old articles.
(4) Citation rate, normalized to year.


Rank Reference # ref.
in cl.		 Shr. of ref. in
cl.		 Citations
1 RODRIGUEZ, J , MOSQUERA, J , VAZQUEZ, ME , MASCARENAS, JL , (2016) NICKEL-PROMOTED RECOGNITION OF LONG DNA SITES BY DESIGNED PEPTIDE DERIVATIVES.CHEMISTRY-A EUROPEAN JOURNAL. VOL. 22. ISSUE 38. P. 13474 -13477 35 69% 1
2 RODRIGUEZ, J , MOSQUERA, J , GARCIA-FANDINO, R , VAZQUEZ, ME , MASCARENAS, JL , (2016) A DESIGNED DNA BINDING MOTIF THAT RECOGNIZES EXTENDED SITES AND SPANS TWO ADJACENT MAJOR GROOVES.CHEMICAL SCIENCE. VOL. 7. ISSUE 5. P. 3298 -3303 31 55% 3
3 HIRATA, A , UENO, M , AIZAWA, Y , OHKUBO, K , MORII, T , YOSHIKAWA, S , (2005) DUAL DNA RECOGNITION CODES OF A SHORT PEPTIDE DERIVED FROM THE BASIC LEUCINE ZIPPER PROTEIN EMBP1.BIOORGANIC & MEDICINAL CHEMISTRY. VOL. 13. ISSUE 9. P. 3107 -3116 37 67% 1
4 MOSQUERA, J , SANCHEZ, MI , VALERO, J , DE MENDOZA, J , VAZQUEZ, ME , MASCARENAS, JL , (2015) SEQUENCE-SELECTIVE DNA BINDING WITH CELL-PERMEABLE OLIGOGUANIDINIUM-PEPTIDE CONJUGATES.CHEMICAL COMMUNICATIONS. VOL. 51. ISSUE 23. P. 4811 -4814 31 55% 1
5 MOSQUERA, J , JIMENEZ-BALSA, A , DODERO, VI , VAZQUEZ, ME , MASCARENAS, JL , (2013) STIMULI-RESPONSIVE SELECTION OF TARGET DNA SEQUENCES BY SYNTHETIC BZIP PEPTIDES.NATURE COMMUNICATIONS. VOL. 4. ISSUE . P. - 25 69% 7
6 RODRIGUEZ, J , MOSQUERA, J , COUCEIRO, JR , VAZQUEZ, ME , MASCARENAS, JL , (2015) THE AT-HOOK MOTIF AS A VERSATILE MINOR GROOVE ANCHOR FOR PROMOTING DNA BINDING OF TRANSCRIPTION FACTOR FRAGMENTS.CHEMICAL SCIENCE. VOL. 6. ISSUE 8. P. 4767 -4771 27 57% 2
7 SANCHEZ, MI , MOSQUERA, J , VAZQUEZ, ME , MASCARENAS, JL , (2014) REVERSIBLE SUPRAMOLECULAR ASSEMBLY AT SPECIFIC DNA SITES: NICKEL-PROMOTED BIVALENT DNA BINDING WITH DESIGNED PEPTIDE AND BIPYRIDYL-BIS(BENZAMIDINE) COMPONENTS.ANGEWANDTE CHEMIE-INTERNATIONAL EDITION. VOL. 53. ISSUE 37. P. 9917 -9921 25 56% 5
8 SANCHEZ, MI , VAZQUEZ, O , VAZQUEZ, ME , MASCARENAS, JL , (2013) SEQUENCE-SELECTIVE DNA RECOGNITION WITH PEPTIDE-BISBENZAMIDINE CONJUGATES.CHEMISTRY-A EUROPEAN JOURNAL. VOL. 19. ISSUE 30. P. 9923 -9929 23 53% 7
9 BLANCO, JB , DODERO, VL , VAZQUEZ, ME , MOSQUERA, M , CASTEDO, L , MASCARENAS, JL , (2006) SEQUENCE-SPECIFIC DNA BINDING BY NONCOVALENT PEPTIDE-TRIPYRROLE CONJUGATES.ANGEWANDTE CHEMIE-INTERNATIONAL EDITION. VOL. 45. ISSUE 48. P. 8210 -8214 19 79% 6
10 PELLEGRINI, M , EBRIGHT, RH , (1996) ARTIFICIAL SEQUENCE-SPECIFIC DNA BINDING PEPTIDES: BRANCHED-CHAIN BASIC REGIONS.JOURNAL OF THE AMERICAN CHEMICAL SOCIETY. VOL. 118. ISSUE 25. P. 5831-5835 28 65% 17

Classes with closest relation at Level 1


Rank Class id link
1 5549 COILED COIL//PROTEIN DESIGN//DE NOVO DESIGN
2 14197 ARTIFICIAL TRANSCRIPTION FACTOR//ZINC FINGER//RECOGNITION CODE
3 6241 LAC REPRESSOR//TRP REPRESSOR//LACTOSE REPRESSOR
4 4454 AP 1//FRA 1//JUN
5 15710 ALPHA HELIX MIMETICS//STAPLED PEPTIDES//PROTEOMIMETICS
6 32849 TRANSCRIPTION FACTOR DETECTION//MOL IMAGING PROBES//CELL NUCLEAR EXTRACTS
7 34246 E2A HLF//DRS GENE//HEPATIC LEUKEMIA FACTOR
8 27051 MAFB//C MAF//EXPT THER EUT TRANSLAT ONCOL PROGRAM
9 3208 MINOR GROOVE BINDER//DISTAMYCIN//PYRROLE IMIDAZOLE POLYAMIDE
10 34853 TRIVALINE//TRIPLE RINGS//4 4 SULFONYLDIANILINE

Go to start page