Class information for:
Level 1: GRAPHICAL REPRESENTATION//ALIGNMENT FREE//ALIGNMENT FREE METHOD

Basic class information
Class id #P Avg. number of
references		 Database coverage
of references
12242 921 31.1 74%


Bar chart of Publication_year

Last years might be incomplete

Hierarchy of classes
The table includes all classes above and classes immediately below the current class.


Cluster id Level Cluster label #P
0 4 BIOCHEMISTRY & MOLECULAR BIOLOGY//CELL BIOLOGY//ONCOLOGY 4064930
90 3       MATHEMATICAL & COMPUTATIONAL BIOLOGY//BIOINFORMATICS//BMC BIOINFORMATICS 77178
3201 2             GRAPHICAL REPRESENTATION//AUTHORSHIP ATTRIBUTION//CODE CLONE 2089
12242 1                   GRAPHICAL REPRESENTATION//ALIGNMENT FREE//ALIGNMENT FREE METHOD 921

Terms with highest relevance score


rank Term termType Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 GRAPHICAL REPRESENTATION authKW 1146577 8% 46% 76
2 ALIGNMENT FREE authKW 575373 3% 54% 32
3 ALIGNMENT FREE METHOD authKW 350175 1% 81% 13
4 NUMERICAL CHARACTERIZATION authKW 270738 2% 58% 14
5 SIMILARITIES DISSIMILARITIES authKW 265225 1% 100% 8
6 CHAOS GAME REPRESENTATION authKW 238681 2% 40% 18
7 ALIGNMENT FREE SEQUENCE COMPARISON authKW 235753 1% 89% 8
8 PROTEOMICS MAPS authKW 232072 1% 100% 7
9 LZ COMPLEXITY authKW 180497 1% 78% 7
10 T LIFE address 176066 2% 30% 18

Web of Science journal categories


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 Mathematical & Computational Biology 21391 28% 0% 258
2 Computer Science, Interdisciplinary Applications 4305 19% 0% 173
3 Mathematics, Interdisciplinary Applications 3040 13% 0% 123
4 Biochemical Research Methods 2334 17% 0% 160
5 Biology 1250 11% 0% 101
6 Biotechnology & Applied Microbiology 923 15% 0% 134
7 Evolutionary Biology 691 6% 0% 56
8 Chemistry, Multidisciplinary 469 17% 0% 157
9 Physics, Atomic, Molecular & Chemical 384 9% 0% 85
10 Genetics & Heredity 384 10% 0% 90

Address terms


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 T LIFE 176066 2% 30% 18
2 PRACOWNIA CHEMOMETRII SRODOWISKA 66306 0% 100% 2
3 SHANGHAI SYST BIOL 66306 0% 100% 2
4 COMP COMMUN 48281 5% 3% 47
5 RADIOL INFORMAT STAT 45114 1% 19% 7
6 ACCADEMIA NAZL LINCEI DEI 33153 0% 100% 1
7 AGR HYDRAUL ENGN 33153 0% 100% 1
8 AIZU CLUSTER MED ENGN INFORMAT ARC MED 33153 0% 100% 1
9 ALGORITHMS BIOINFORMAT COMPLEX FORMAL METHODS 33153 0% 100% 1
10 BETH ISRAEL DEACONESS MED GENOM 33153 0% 100% 1

Journals


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 MATCH-COMMUNICATIONS IN MATHEMATICAL AND IN COMPUTER CHEMISTRY 77497 6% 4% 59
2 JOURNAL OF MATHEMATICAL CHEMISTRY 10683 3% 1% 29
3 JOURNAL OF THEORETICAL BIOLOGY 9923 6% 1% 57
4 ALGORITHMS FOR MOLECULAR BIOLOGY 9472 1% 3% 9
5 JOURNAL OF COMPUTATIONAL BIOLOGY 9349 2% 1% 21
6 SAR AND QSAR IN ENVIRONMENTAL RESEARCH 8229 2% 2% 14
7 EVOLUTIONARY BIOINFORMATICS 6720 1% 3% 8
8 CURRENT BIOINFORMATICS 4785 1% 2% 8
9 CURRENT COMPUTER-AIDED DRUG DESIGN 4750 1% 2% 7
10 JOURNAL OF COMPUTATIONAL AND THEORETICAL NANOSCIENCE 4563 2% 1% 21

Author Key Words


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class		 LCSH search Wikipedia search
1 GRAPHICAL REPRESENTATION 1146577 8% 46% 76 Search GRAPHICAL+REPRESENTATION Search GRAPHICAL+REPRESENTATION
2 ALIGNMENT FREE 575373 3% 54% 32 Search ALIGNMENT+FREE Search ALIGNMENT+FREE
3 ALIGNMENT FREE METHOD 350175 1% 81% 13 Search ALIGNMENT+FREE+METHOD Search ALIGNMENT+FREE+METHOD
4 NUMERICAL CHARACTERIZATION 270738 2% 58% 14 Search NUMERICAL+CHARACTERIZATION Search NUMERICAL+CHARACTERIZATION
5 SIMILARITIES DISSIMILARITIES 265225 1% 100% 8 Search SIMILARITIES+DISSIMILARITIES Search SIMILARITIES+DISSIMILARITIES
6 CHAOS GAME REPRESENTATION 238681 2% 40% 18 Search CHAOS+GAME+REPRESENTATION Search CHAOS+GAME+REPRESENTATION
7 ALIGNMENT FREE SEQUENCE COMPARISON 235753 1% 89% 8 Search ALIGNMENT+FREE+SEQUENCE+COMPARISON Search ALIGNMENT+FREE+SEQUENCE+COMPARISON
8 PROTEOMICS MAPS 232072 1% 100% 7 Search PROTEOMICS+MAPS Search PROTEOMICS+MAPS
9 LZ COMPLEXITY 180497 1% 78% 7 Search LZ+COMPLEXITY Search LZ+COMPLEXITY
10 ALIGNMENT FREE GENOME COMPARISON 165765 1% 100% 5 Search ALIGNMENT+FREE+GENOME+COMPARISON Search ALIGNMENT+FREE+GENOME+COMPARISON

Core articles
The table includes core articles in the class. The following variables is taken into account for the relevance score of an article in a cluster c:
(1) Number of references referring to publications in the class.
(2) Share of total number of active references referring to publications in the class.
(3) Age of the article. New articles get higher score than old articles.
(4) Citation rate, normalized to year.


Rank Reference # ref.
in cl.		 Shr. of ref. in
cl.		 Citations
1 BIELINSKA-WAZ, D , (2011) GRAPHICAL AND NUMERICAL REPRESENTATIONS OF DNA SEQUENCES: STATISTICAL ASPECTS OF SIMILARITY.JOURNAL OF MATHEMATICAL CHEMISTRY. VOL. 49. ISSUE 10. P. 2345 -2407 96 76% 20
2 YAO, YH , KONG, F , DAI, Q , HE, PA , (2013) A SEQUENCE-SEGMENTED METHOD APPLIED TO THE SIMILARITY ANALYSIS OF LONG PROTEIN SEQUENCE.MATCH-COMMUNICATIONS IN MATHEMATICAL AND IN COMPUTER CHEMISTRY. VOL. 70. ISSUE 1. P. 431-450 59 92% 4
3 QI, ZH , JIN, MZ , WANG, JS , LI, SL , (2015) NOVEL DNA SEQUENCE COMPARISON METHOD BASED ON MARKOV CHAIN AND INFORMATION ENTROPY.MINI-REVIEWS IN ORGANIC CHEMISTRY. VOL. 12. ISSUE 6. P. 524 -533 54 93% 1
4 RANDIC, M , NOVIC, M , PLAVSIC, D , (2013) MILESTONES IN GRAPHICAL BIOINFORMATICS.INTERNATIONAL JOURNAL OF QUANTUM CHEMISTRY. VOL. 113. ISSUE 22. P. 2413-2446 72 62% 16
5 RANDIC, M , ZUPAN, J , BALABAN, AT , VIKIC-TOPIC, D , PLAVSIC, D , (2011) GRAPHICAL REPRESENTATION OF PROTEINS.CHEMICAL REVIEWS. VOL. 111. ISSUE 2. P. 790 -862 82 51% 61
6 RANDIC, M , NOVIC, M , CHOUDHURY, AR , PLAVSIC, D , (2012) ON GRAPHICAL REPRESENTATION OF TRANS-MEMBRANE PROTEINS.SAR AND QSAR IN ENVIRONMENTAL RESEARCH. VOL. 23. ISSUE 3-4. P. 327-343 47 100% 9
7 YAO, YH , YAN, SJ , HAN, JN , DAI, Q , HE, PA , (2014) A NOVEL DESCRIPTOR OF PROTEIN SEQUENCES AND ITS APPLICATION.JOURNAL OF THEORETICAL BIOLOGY. VOL. 347. ISSUE . P. 109-117 49 82% 14
8 QI, ZH , JIN, MZ , YANG, H , (2015) A MEASURE OF PROTEIN SEQUENCE CHARACTERISTICS BASED ON THE FREQUENCY AND THE POSITION ENTROPY OF EXISTING K-WORDS.MATCH-COMMUNICATIONS IN MATHEMATICAL AND IN COMPUTER CHEMISTRY. VOL. 73. ISSUE 3. P. 731 -748 46 96% 0
9 YU, HJ , HUANG, DS , (2012) NOVEL GRAPHICAL REPRESENTATION OF GENOME SEQUENCE AND ITS APPLICATIONS IN SIMILARITY ANALYSIS.PHYSICA A-STATISTICAL MECHANICS AND ITS APPLICATIONS. VOL. 391. ISSUE 23. P. 6128-6136 47 94% 5
10 NANDY, A , HARLE, M , BASAK, SC , (2006) MATHEMATICAL DESCRIPTORS OF DNA SEQUENCES: DEVELOPMENT AND APPLICATIONS.ARKIVOC. VOL. . ISSUE . P. 211 -238 50 91% 82

Classes with closest relation at Level 1


Rank Class id link
1 11165 LATENT PERIODICITY//TRIPLET PERIODICITY//LONG RANGE CORRELATION
2 32030 NORMALIZED COMPRESSION DISTANCE//WORD REMOVAL//INFORMATION DISTANCE
3 2741 PSEUDO AMINO ACID COMPOSITION//PROTEIN STRUCTURAL CLASS//JACKKNIFE TEST
4 7367 CHEM BIOACT//UNIDAD INVEST DISENO FARMACOS CONECTIVIDAD MOL//UNIV CIENCIA MOL
5 17260 SUCCESS RUNS//DISTRIBUTIONS OF ORDER K//PROBABILITY GENERATING FUNCTION
6 2338 MULTIPLE SEQUENCE ALIGNMENT//SEQUENCE ALIGNMENT//COMPUTER APPLICATIONS IN THE BIOSCIENCES
7 6844 LATERAL GENE TRANSFER//TREE OF LIFE//HORIZONTAL GENE TRANSFER
8 25327 R391//R997//GENOMIC ISLAND
9 2829 CODON USAGE//CODON USAGE BIAS//SYNONYMOUS CODON USAGE
10 30102 ELECTRON ION INTERACTION POTENTIAL//INFORMATIONAL SPECTRUM METHOD//RESONANT RECOGNITION MODEL

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