Class information for:
Level 1: REPEAT PROTEIN//FN3//ANKYRIN REPEAT

Basic class information
Class id #P Avg. number of
references		 Database coverage
of references
18905 531 46.3 91%


Bar chart of Publication_year

Last years might be incomplete

Hierarchy of classes
The table includes all classes above and classes immediately below the current class.


Cluster id Level Cluster label #P
0 4 BIOCHEMISTRY & MOLECULAR BIOLOGY//CELL BIOLOGY//ONCOLOGY 4064930
478 3       PHAGE DISPLAY//CELL FREE PROTEIN SYNTHESIS//ANTIBODY ENGINEERING 23687
1834 2             PHAGE DISPLAY//ANTIBODY ENGINEERING//BISPECIFIC ANTIBODY 6173
18905 1                   REPEAT PROTEIN//FN3//ANKYRIN REPEAT 531

Terms with highest relevance score


rank Term termType Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 REPEAT PROTEIN authKW 1844299 8% 76% 42
2 FN3 authKW 306684 2% 67% 8
3 ANKYRIN REPEAT authKW 269250 5% 20% 24
4 LEHRSTUHL BIOL CHEM address 254019 5% 16% 27
5 DESIGNED ANKYRIN REPEAT PROTEINS DARPINS authKW 230017 1% 100% 4
6 DARPIN authKW 224438 2% 35% 11
7 ANTICALIN authKW 207011 1% 60% 6
8 ALTERNATIVE SCAFFOLD authKW 201258 1% 50% 7
9 TC JENKINS BIOPHYS address 200530 5% 13% 27
10 BILIN BINDING PROTEIN authKW 159730 1% 56% 5

Web of Science journal categories


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 Biochemistry & Molecular Biology 4273 72% 0% 383
2 Biophysics 740 14% 0% 76
3 Biotechnology & Applied Microbiology 439 13% 0% 71
4 Biochemical Research Methods 438 10% 0% 55
5 Mathematical & Computational Biology 308 5% 0% 25
6 Cell Biology 145 10% 0% 55
7 Biology 2 1% 0% 7
8 Computer Science, Interdisciplinary Applications 1 1% 0% 6
9 Crystallography 1 1% 0% 6
10 Chemistry, Multidisciplinary 1 5% 0% 24

Address terms


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 LEHRSTUHL BIOL CHEM 254019 5% 16% 27
2 TC JENKINS BIOPHYS 200530 5% 13% 27
3 IMDEA NANOCIENCIA ASSOCIATED UNIT 129383 1% 75% 3
4 MOL PARTNERS AG 76671 0% 67% 2
5 ADNEXUS 57504 0% 100% 1
6 ADVACED SCI LEADERS DEV UNIT 57504 0% 100% 1
7 BIOMED TECHNOL UNIT ASSOCIATED MED SCI 57504 0% 100% 1
8 EQUIPE MODELISAT INGN PROTUMR8619 57504 0% 100% 1
9 EXP PLEGADO PROT 57504 0% 100% 1
10 FOOD QUAL SAFETY SCAU 57504 0% 100% 1

Journals


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 PROTEIN ENGINEERING DESIGN & SELECTION 34576 5% 2% 25
2 JOURNAL OF MOLECULAR BIOLOGY 11068 13% 0% 67
3 PROTEIN SCIENCE 7160 5% 0% 28
4 CURRENT OPINION IN STRUCTURAL BIOLOGY 4252 2% 1% 13
5 STRUCTURE 3389 3% 0% 15
6 ACS CHEMICAL BIOLOGY 2660 2% 0% 10
7 PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS 1745 3% 0% 14
8 JOURNAL OF STRUCTURAL BIOLOGY 1331 2% 0% 9
9 ANGIOGENESIS 1248 0% 2% 1
10 CURRENT OPINION IN BIOTECHNOLOGY 883 1% 0% 6

Author Key Words


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class		 LCSH search Wikipedia search
1 REPEAT PROTEIN 1844299 8% 76% 42 Search REPEAT+PROTEIN Search REPEAT+PROTEIN
2 FN3 306684 2% 67% 8 Search FN3 Search FN3
3 ANKYRIN REPEAT 269250 5% 20% 24 Search ANKYRIN+REPEAT Search ANKYRIN+REPEAT
4 DESIGNED ANKYRIN REPEAT PROTEINS DARPINS 230017 1% 100% 4 Search DESIGNED+ANKYRIN+REPEAT+PROTEINS+DARPINS Search DESIGNED+ANKYRIN+REPEAT+PROTEINS+DARPINS
5 DARPIN 224438 2% 35% 11 Search DARPIN Search DARPIN
6 ANTICALIN 207011 1% 60% 6 Search ANTICALIN Search ANTICALIN
7 ALTERNATIVE SCAFFOLD 201258 1% 50% 7 Search ALTERNATIVE+SCAFFOLD Search ALTERNATIVE+SCAFFOLD
8 BILIN BINDING PROTEIN 159730 1% 56% 5 Search BILIN+BINDING+PROTEIN Search BILIN+BINDING+PROTEIN
9 DESIGNED ANKYRIN REPEAT PROTEINS 159730 1% 56% 5 Search DESIGNED+ANKYRIN+REPEAT+PROTEINS Search DESIGNED+ANKYRIN+REPEAT+PROTEINS
10 ARMADILLO REPEAT 156531 1% 39% 7 Search ARMADILLO+REPEAT Search ARMADILLO+REPEAT

Core articles
The table includes core articles in the class. The following variables is taken into account for the relevance score of an article in a cluster c:
(1) Number of references referring to publications in the class.
(2) Share of total number of active references referring to publications in the class.
(3) Age of the article. New articles get higher score than old articles.
(4) Citation rate, normalized to year.


Rank Reference # ref.
in cl.		 Shr. of ref. in
cl.		 Citations
1 BOERSMA, YL , PLUCKTHUN, A , (2011) DARPINS AND OTHER REPEAT PROTEIN SCAFFOLDS: ADVANCES IN ENGINEERING AND APPLICATIONS.CURRENT OPINION IN BIOTECHNOLOGY. VOL. 22. ISSUE 6. P. 849-857 48 63% 82
2 JAVADI, Y , ITZHAKI, LS , (2013) TANDEM-REPEAT PROTEINS: REGULARITY PLUS MODULARITY EQUALS DESIGN-ABILITY.CURRENT OPINION IN STRUCTURAL BIOLOGY. VOL. 23. ISSUE 4. P. 622-631 47 68% 22
3 ITZHAKI, LS , LOWE, AR , (2012) FROM ARTIFICIAL ANTIBODIES TO NANOSPRINGS THE BIOPHYSICAL PROPERTIES OF REPEAT PROTEINS.PROTEIN DIMERIZATION AND OLIGOMERIZATION IN BIOLOGY. VOL. 747. ISSUE . P. 153 -166 52 63% 5
4 MAIN, ERG , PHILLIPS, JJ , MILLERSHIP, C , (2013) REPEAT PROTEIN ENGINEERING: CREATING FUNCTIONAL NANOSTRUCTURES/BIOMATERIALS FROM MODULAR BUILDING BLOCKS.BIOCHEMICAL SOCIETY TRANSACTIONS. VOL. 41. ISSUE . P. 1152-1158 38 76% 5
5 MILLERSHIP, C , PHILLIPS, JJ , MAIN, ERG , (2016) ISING MODEL REPROGRAMMING OF A REPEAT PROTEIN'S EQUILIBRIUM UNFOLDING PATHWAY.JOURNAL OF MOLECULAR BIOLOGY. VOL. 428. ISSUE 9. P. 1804 -1817 34 71% 1
6 ERNST, P , PLUCKTHUN, A , (2017) ADVANCES IN THE DESIGN AND ENGINEERING OF PEPTIDE-BINDING REPEAT PROTEINS.BIOLOGICAL CHEMISTRY. VOL. 398. ISSUE 1. P. 23 -29 28 88% 0
7 BARRICK, D , FERREIRO, DU , KOMIVES, EA , (2008) FOLDING LANDSCAPES OF ANKYRIN REPEAT PROTEINS: EXPERIMENTS MEET THEORY.CURRENT OPINION IN STRUCTURAL BIOLOGY. VOL. 18. ISSUE 1. P. 27-34 39 71% 36
8 HIRSH, L , PIOVESAN, D , PALADIN, L , TOSATTO, SCE , (2016) IDENTIFICATION OF REPETITIVE UNITS IN PROTEIN STRUCTURES WITH REUPRED.AMINO ACIDS. VOL. 48. ISSUE 6. P. 1391 -1400 28 76% 0
9 GUELLOUZ, A , VALERIO-LEPINIEC, M , URVOAS, A , CHEVREL, A , GRAILLE, M , FOURATI-KAMMOUN, Z , DESMADRIL, M , VAN TILBEURGH, H , MINARD, P , (2013) SELECTION OF SPECIFIC PROTEIN BINDERS FOR PRE-DEFINED TARGETS FROM AN OPTIMIZED LIBRARY OF ARTIFICIAL HELICOIDAL REPEAT PROTEINS (ALPHAREP).PLOS ONE. VOL. 8. ISSUE 8. P. - 36 60% 6
10 PHILLIPS, JJ , JAVADI, Y , MILLERSHIP, C , MAIN, ERG , (2012) MODULATION OF THE MULTISTATE FOLDING OF DESIGNED TPR PROTEINS THROUGH INTRINSIC AND EXTRINSIC FACTORS.PROTEIN SCIENCE. VOL. 21. ISSUE 3. P. 327-338 27 77% 9

Classes with closest relation at Level 1


Rank Class id link
1 13646 AFFIBODY MOLECULE//AFFIBODY//BIOMED RADIAT SCI
2 14481 NANOBODY//SINGLE DOMAIN ANTIBODY//VHH
3 31500 TRANSDOMINANT GENETICS//TRANSDOMINANT//PEPTIDE APTAMERS
4 14625 RIBOSOME DISPLAY//MRNA DISPLAY//FOUR BASE CODON
5 31515 GANKYRIN//P28GANK//CUEDC2
6 36673 MYOTROPHIN//V 1 PROTEIN//S MYOTROPHIN
7 2141 PHAGE DISPLAY//SCFV//ANTIBODY LIBRARY
8 25675 PROTEIN SWITCH//CIRCULAR PERMUTATION//BIOMED ST PAU IIB SANTPAU
9 13291 COMPUTATIONAL PROTEIN DESIGN//PROTEIN DESIGN//DEAD END ELIMINATION
10 24117 EVOLUTIONARY BIOINFORMAT//FOLD SUPERFAMILY//EVOLUTION OF DOMAIN ARCHITECTURE

Go to start page