Class information for:
Level 2: AUTOPHAGY//BECLIN 1//LC3

Basic class information
Class id #P Avg. number of
references		 Database coverage
of references
1128 9655 52.8 88%


Bar chart of Publication_year

Last years might be incomplete

Hierarchy of classes
The table includes all classes above and classes immediately below the current class.


Cluster id Level Cluster label #P
0 4 BIOCHEMISTRY & MOLECULAR BIOLOGY//CELL BIOLOGY//ONCOLOGY 4064930
262 3       AUTOPHAGY//RESVERATROL//HISTONE DEACETYLASE INHIBITOR 44558
1128 2             AUTOPHAGY//BECLIN 1//LC3 9655
59 1                   AUTOPHAGY//BECLIN 1//LC3 4684
10327 1                   AUTOPHAGY//XENOPHAGY//LC3 ASSOCIATED PHAGOCYTOSIS 1073
12836 1                   ANTILIPOLYTIC DRUGS//EXCESS PEROXISOMES//CELLULAR AUTOPHAGY 877
14041 1                   AUTOPHAGY//DESMIN RELATED CARDIOMYOPATHY//CARDIOVASC ALTERNAT MED 797
18351 1                   LYSOSOME//OSMOTIC SENSITIVITY//CALPAIN CATHEPSIN HYPOTHESIS 555
19319 1                   DANON DISEASE//LAMP 2//LAMP 2 DEFICIENCY 511
23712 1                   MUCOLIPIDOSIS TYPE IV//MUCOLIPIN//MUCOLIPIDOSIS IV 337
25856 1                   BNIP3//BCH DOMAIN//HGTD P 270
26162 1                   AUTOPHAGY//AUTOPHAGIC NEURON DEATH//BIOMFG BIOTECHNOL ENTERPRISE BRITE 262
28679 1                   GERIATR MED NEPHROL B6//AUTOPHAGY//ADENOVIRAL BCL XL 201
36006 1                   NANO EU2O3//ANTI MIGRATION AND ANTI INVASION//AUTOPHAGY MODULATING EFFECT 88

Terms with highest relevance score


rank Term termType Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with term
in class
1 AUTOPHAGY authKW 4120811 39% 35% 3755
2 BECLIN 1 authKW 807638 4% 66% 389
3 LC3 authKW 560859 3% 58% 305
4 AUTOPHAGOSOME authKW 441087 2% 58% 241
5 LYSOSOME authKW 344978 7% 17% 629
6 ATG5 authKW 235924 1% 67% 112
7 BNIP3 authKW 216471 1% 65% 106
8 MACROAUTOPHAGY authKW 210802 1% 60% 112
9 DANON DISEASE authKW 140036 0% 92% 48
10 LAMP 2 authKW 121593 1% 73% 53

Web of Science journal categories


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with term
in class
1 Cell Biology 55588 39% 1% 3776
2 Biochemistry & Molecular Biology 10362 30% 0% 2881
3 Oncology 3688 12% 0% 1161
4 Biophysics 1468 6% 0% 536
5 Medicine, Research & Experimental 1087 5% 0% 496
6 Pathology 784 3% 0% 314
7 CYTOLOGY & HISTOLOGY 448 0% 0% 35
8 Cardiac & Cardiovascular System 405 4% 0% 377
9 Virology 312 2% 0% 184
10 Immunology 245 4% 0% 425

Address terms


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 AUTOPHAGY 93325 0% 62% 48
2 U756 64605 0% 66% 31
3 ANAT CELL DEV BIOL 64182 1% 41% 50
4 BIOREGULAT METAB 52740 0% 76% 22
5 INTRACELLULAR MEMBRANE DYNAM 45667 0% 85% 17
6 MOL CANC GRP 42921 0% 54% 25
7 PROT METAB PROJECT 38863 0% 53% 23
8 SECRETORY PATHWAYS 30103 0% 53% 18
9 CELLULAR REGULAT 29642 0% 36% 26
10 TUMOUR CELL DEATH 26956 0% 53% 16

Journals


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 AUTOPHAGY 1512685 9% 56% 852
2 CELL DEATH AND DIFFERENTIATION 11689 1% 3% 109
3 CELL DEATH & DISEASE 7018 1% 3% 73
4 RBC-CELL BIOLOGY REVIEWS 5767 0% 23% 8
5 JOURNAL OF CELL BIOLOGY 3545 1% 1% 138
6 CELL HOST & MICROBE 3349 0% 3% 34
7 NATURE CELL BIOLOGY 2845 1% 2% 50
8 ONCOTARGET 2710 1% 1% 106
9 ACTA BIOLOGICA ET MEDICA GERMANICA 2704 0% 4% 21
10 JOURNAL OF BIOLOGICAL CHEMISTRY 2480 4% 0% 384

Author Key Words


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with term
in class		 LCSH search Wikipedia search
1 AUTOPHAGY 4120811 39% 35% 3755 Search AUTOPHAGY Search AUTOPHAGY
2 BECLIN 1 807638 4% 66% 389 Search BECLIN+1 Search BECLIN+1
3 LC3 560859 3% 58% 305 Search LC3 Search LC3
4 AUTOPHAGOSOME 441087 2% 58% 241 Search AUTOPHAGOSOME Search AUTOPHAGOSOME
5 LYSOSOME 344978 7% 17% 629 Search LYSOSOME Search LYSOSOME
6 ATG5 235924 1% 67% 112 Search ATG5 Search ATG5
7 BNIP3 216471 1% 65% 106 Search BNIP3 Search BNIP3
8 MACROAUTOPHAGY 210802 1% 60% 112 Search MACROAUTOPHAGY Search MACROAUTOPHAGY
9 DANON DISEASE 140036 0% 92% 48 Search DANON+DISEASE Search DANON+DISEASE
10 LAMP 2 121593 1% 73% 53 Search LAMP+2 Search LAMP+2

Core articles
The table includes core articles in the class. The following variables is taken into account for the relevance score of an article in a cluster c:
(1) Number of references referring to publications in the class.
(2) Share of total number of active references referring to publications in the class.
(3) Age of the article. New articles get higher score than old articles.
(4) Citation rate, normalized to year.


Rank Reference # ref. in
cl.		 Shr. of ref. in
cl.		 Citations
1 CHEN, XM , CHEN, YH , CHEN, YG , CIRONE, M , COCCO, T , CODOGNO, P , COERS, J , COHEN, EEW , COLECCHIA, D , COLETTO, L , ET AL (2016) GUIDELINES FOR THE USE AND INTERPRETATION OF ASSAYS FOR MONITORING AUTOPHAGY (3RD EDITION).AUTOPHAGY. VOL. 12. ISSUE 1. P. 1 -222 1025 52% 97
2 FISHER, EA , FISHER, PB , FLAJOLET, M , FON, EA , FORNAI, F , FORTUNATO, F , FOTEDAR, R , FOWLER, DH , FOX, HS , FRANCO, R , ET AL (2012) GUIDELINES FOR THE USE AND INTERPRETATION OF ASSAYS FOR MONITORING AUTOPHAGY.AUTOPHAGY. VOL. 8. ISSUE 4. P. 445 -544 492 62% 1034
3 FENG, YC , HE, D , YAO, ZY , KLIONSKY, DJ , (2014) THE MACHINERY OF MACROAUTOPHAGY.CELL RESEARCH. VOL. 24. ISSUE 1. P. 24-41 159 96% 244
4 RAVIKUMAR, B , SARKAR, S , DAVIES, JE , FUTTER, M , GARCIA-ARENCIBIA, M , GREEN-THOMPSON, ZW , JIMENEZ-SANCHEZ, M , KOROLCHUK, VI , LICHTENBERG, M , LUO, SQ , ET AL (2010) REGULATION OF MAMMALIAN AUTOPHAGY IN PHYSIOLOGY AND PATHOPHYSIOLOGY.PHYSIOLOGICAL REVIEWS. VOL. 90. ISSUE 4. P. 1383 -1435 318 56% 618
5 RUBINSZTEIN, DC , CODOGNO, P , LEVINE, B , (2012) AUTOPHAGY MODULATION AS A POTENTIAL THERAPEUTIC TARGET FOR DIVERSE DISEASES.NATURE REVIEWS DRUG DISCOVERY. VOL. 11. ISSUE 9. P. 709 -U84 187 76% 395
6 WESSELBORG, S , STORK, B , (2015) AUTOPHAGY SIGNAL TRANSDUCTION BY ATG PROTEINS: FROM HIERARCHIES TO NETWORKS.CELLULAR AND MOLECULAR LIFE SCIENCES. VOL. 72. ISSUE 24. P. 4721 -4757 305 80% 11
7 MIZUSHIMA, N , YOSHIMORI, T , OHSUMI, Y , (2011) THE ROLE OF ATG PROTEINS IN AUTOPHAGOSOME FORMATION.ANNUAL REVIEW OF CELL AND DEVELOPMENTAL BIOLOGY, VOL 27. VOL. 27. ISSUE . P. 107-132 140 89% 620
8 HE, CC , KLIONSKY, DJ , (2009) REGULATION MECHANISMS AND SIGNALING PATHWAYS OF AUTOPHAGY.ANNUAL REVIEW OF GENETICS. VOL. 43. ISSUE . P. 67-93 128 75% 1154
9 WEIDBERG, H , SHVETS, E , ELAZAR, Z , (2011) BIOGENESIS AND CARGO SELECTIVITY OF AUTOPHAGOSOMES.ANNUAL REVIEW OF BIOCHEMISTRY, VOL 80. VOL. 80. ISSUE . P. 125-156 182 85% 205
10 KLIONSKY, DJ , ABELIOVICH, H , AGOSTINIS, P , AGRAWAL, DK , ALIEV, G , ASKEW, DS , BABA, M , BAEHRECKE, EH , BAHR, BA , BALLABIO, A , ET AL (2008) GUIDELINES FOR THE USE AND INTERPRETATION OF ASSAYS FOR MONITORING AUTOPHAGY IN HIGHER EUKARYOTES.AUTOPHAGY. VOL. 4. ISSUE 2. P. 151 -175 131 78% 1142

Classes with closest relation at Level 2


Rank Class id link
1 1220 PTEN//MTOR//COWDEN SYNDROME
2 1744 CATHEPSIN//CATHEPSIN K//CATHEPSIN B
3 3012 MANNOSE RECEPTOR//ENDO180//ASIALOGLYCOPROTEIN RECEPTOR
4 3898 CYSTINOSIS//NEPHROPATHIC CYSTINOSIS//SALLA DISEASE
5 1548 UNFOLDED PROTEIN RESPONSE//ENDOPLASMIC RETICULUM STRESS//ER STRESS
6 677 PROTEASOME//UBIQUITIN//PROTEASOME INHIBITOR
7 2357 PEUTZ JEGHERS SYNDROME//AMPK//LKB1
8 447 TRAFFIC//ENDOCYTOSIS//CLATHRIN
9 2994 NRF2//KEAP1//ANTIOXIDANT RESPONSE ELEMENT
10 2612 WARBURG EFFECT//PKM2//PYRUVATE KINASE

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