Class information for:
Level 1: GENOME REARRANGEMENT//SORTING BY REVERSALS//GENOME REARRANGEMENTS

Basic class information
Class id #P Avg. number of
references		 Database coverage
of references
14677 756 23.8 59%


Bar chart of Publication_year

Last years might be incomplete

Hierarchy of classes
The table includes all classes above and classes immediately below the current class.


Cluster id Level Cluster label #P
0 4 BIOCHEMISTRY & MOLECULAR BIOLOGY//CELL BIOLOGY//ONCOLOGY 4064930
90 3       MATHEMATICAL & COMPUTATIONAL BIOLOGY//BIOINFORMATICS//BMC BIOINFORMATICS 77178
126 2             MOLECULAR BIOLOGY AND EVOLUTION//BIOINFORMATICS//MATHEMATICAL & COMPUTATIONAL BIOLOGY 23963
14677 1                   GENOME REARRANGEMENT//SORTING BY REVERSALS//GENOME REARRANGEMENTS 756

Terms with highest relevance score


rank Term termType Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 GENOME REARRANGEMENT authKW 1526184 10% 48% 78
2 SORTING BY REVERSALS authKW 981455 4% 90% 27
3 GENOME REARRANGEMENTS authKW 749627 6% 40% 46
4 BREAKPOINT GRAPH authKW 565450 2% 100% 14
5 COMMON INTERVALS authKW 527752 2% 93% 14
6 DCJ authKW 444282 1% 100% 11
7 SORTING BY TRANSPOSITIONS authKW 363504 1% 100% 9
8 GENE TEAMS authKW 323114 1% 100% 8
9 CONSECUTIVE ONES PROPERTY authKW 263862 2% 47% 14
10 BREAKPOINT DISTANCE authKW 258488 1% 80% 8

Web of Science journal categories


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 Mathematical & Computational Biology 33833 39% 0% 293
2 Biochemical Research Methods 9939 38% 0% 289
3 Biotechnology & Applied Microbiology 4925 35% 0% 261
4 Computer Science, Theory & Methods 4267 21% 0% 159
5 Statistics & Probability 4164 18% 0% 139
6 Computer Science, Interdisciplinary Applications 4070 20% 0% 152
7 Computer Science, Information Systems 1115 10% 0% 79
8 Mathematics, Applied 894 15% 0% 111
9 Genetics & Heredity 667 13% 0% 102
10 Mathematics, Interdisciplinary Applications 309 5% 0% 38

Address terms


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 DATA MIN SEARCH GRP 168287 1% 83% 5
2 EPFL IC LCBB 121168 0% 100% 3
3 AG GENOMINFORMAT 100958 1% 25% 10
4 LACIM 94646 3% 12% 19
5 EQUIPE EBM 80779 0% 100% 2
6 IIS LCBB 80779 0% 100% 2
7 PUBL HLTH INFORMAT FELLOW PROGRAM 80779 0% 100% 2
8 TEAM BAMBOO 80779 0% 100% 2
9 IGM INFO 59389 1% 29% 5
10 TECH FAK 59177 3% 6% 26

Journals


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 JOURNAL OF COMPUTATIONAL BIOLOGY 248949 13% 6% 98
2 IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS 43717 5% 3% 35
3 BMC BIOINFORMATICS 20645 8% 1% 62
4 ALGORITHMS FOR MOLECULAR BIOLOGY 14253 1% 4% 10
5 BIOINFORMATICS 10205 7% 0% 52
6 THEORETICAL COMPUTER SCIENCE 7921 6% 0% 46
7 LECTURE NOTES IN COMPUTER SCIENCE 6347 16% 0% 119
8 SIAM JOURNAL ON DISCRETE MATHEMATICS 3847 2% 1% 14
9 GENE-COMBIS 3364 0% 8% 1
10 DISCRETE APPLIED MATHEMATICS 3238 3% 0% 23

Author Key Words


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class		 LCSH search Wikipedia search
1 GENOME REARRANGEMENT 1526184 10% 48% 78 Search GENOME+REARRANGEMENT Search GENOME+REARRANGEMENT
2 SORTING BY REVERSALS 981455 4% 90% 27 Search SORTING+BY+REVERSALS Search SORTING+BY+REVERSALS
3 GENOME REARRANGEMENTS 749627 6% 40% 46 Search GENOME+REARRANGEMENTS Search GENOME+REARRANGEMENTS
4 BREAKPOINT GRAPH 565450 2% 100% 14 Search BREAKPOINT+GRAPH Search BREAKPOINT+GRAPH
5 COMMON INTERVALS 527752 2% 93% 14 Search COMMON+INTERVALS Search COMMON+INTERVALS
6 DCJ 444282 1% 100% 11 Search DCJ Search DCJ
7 SORTING BY TRANSPOSITIONS 363504 1% 100% 9 Search SORTING+BY+TRANSPOSITIONS Search SORTING+BY+TRANSPOSITIONS
8 GENE TEAMS 323114 1% 100% 8 Search GENE+TEAMS Search GENE+TEAMS
9 CONSECUTIVE ONES PROPERTY 263862 2% 47% 14 Search CONSECUTIVE+ONES+PROPERTY Search CONSECUTIVE+ONES+PROPERTY
10 BREAKPOINT DISTANCE 258488 1% 80% 8 Search BREAKPOINT+DISTANCE Search BREAKPOINT+DISTANCE

Core articles
The table includes core articles in the class. The following variables is taken into account for the relevance score of an article in a cluster c:
(1) Number of references referring to publications in the class.
(2) Share of total number of active references referring to publications in the class.
(3) Age of the article. New articles get higher score than old articles.
(4) Citation rate, normalized to year.


Rank Reference # ref.
in cl.		 Shr. of ref. in
cl.		 Citations
1 LIN, YC , TANG, CY , (2006) EXPOSING PHYLOGENETIC RELATIONSHIPS BY GENOME REARRANGEMENT.ADVANCES IN COMPUTERS , VOL 68. VOL. 68. ISSUE . P. 1 -57 68 67% 1
2 RAJARAMAN, A , MA, J , (2016) RECONSTRUCTING ANCESTRAL GENE ORDERS WITH DUPLICATIONS GUIDED BY SYNTENY LEVEL GENOME RECONSTRUCTION.BMC BIOINFORMATICS. VOL. 17. ISSUE . P. - 27 87% 0
3 HUANG, YL , HUANG, CC , TANG, CY , LU, CL , (2010) SORT(2): A TOOL FOR SORTING GENOMES AND RECONSTRUCTING PHYLOGENETIC TREES BY REVERSALS, GENERALIZED TRANSPOSITIONS AND TRANSLOCATIONS.NUCLEIC ACIDS RESEARCH. VOL. 38. ISSUE . P. W221 -W227 25 96% 5
4 SANKOFF, D , ZHENG, CF , MUNOZ, A , YANG, ZY , ADAM, Z , WARREN, R , CHOI, V , ZHU, Q , (2010) ISSUES IN THE RECONSTRUCTION OF GENE ORDER EVOLUTION.JOURNAL OF COMPUTER SCIENCE AND TECHNOLOGY. VOL. 25. ISSUE 1. P. 10 -25 27 87% 1
5 FEIJAO, P , MEIDANIS, J , (2011) SCJ: A BREAKPOINT-LIKE DISTANCE THAT SIMPLIFIES SEVERAL REARRANGEMENT PROBLEMS.IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS. VOL. 8. ISSUE 5. P. 1318 -1329 24 92% 9
6 LI, ZM , WANG, LH , ZHANG, KH , (2006) ALGORITHMIC APPROACHES FOR GENOME REARRANGEMENT: A REVIEW.IEEE TRANSACTIONS ON SYSTEMS MAN AND CYBERNETICS PART C-APPLICATIONS AND REVIEWS. VOL. 36. ISSUE 5. P. 636 -648 31 82% 9
7 FEIJAO, P , ARAUJO, E , (2016) FAST ANCESTRAL GENE ORDER RECONSTRUCTION OF GENOMES WITH UNEQUAL GENE CONTENT.BMC BIOINFORMATICS. VOL. 17. ISSUE . P. - 20 100% 0
8 CHEN, KT , HUANG, KH , LU, CL , (2011) SORTING PERMUTATIONS BY CUT-CIRCULARIZE-LINEARIZE-AND-PASTE OPERATIONS.BMC GENOMICS. VOL. 12. ISSUE . P. - 21 100% 1
9 HUANG, YL , LU, CL , (2010) SORTING BY REVERSALS, GENERALIZED TRANSPOSITIONS, AND TRANSLOCATIONS USING PERMUTATION GROUPS.JOURNAL OF COMPUTATIONAL BIOLOGY. VOL. 17. ISSUE 5. P. 685 -705 21 100% 5
10 AVDEYEV, P , JIANG, S , AGANEZOV, S , HU, F , ALEKSEYEV, MA , (2016) RECONSTRUCTION OF ANCESTRAL GENOMES IN PRESENCE OF GENE GAIN AND LOSS.JOURNAL OF COMPUTATIONAL BIOLOGY. VOL. 23. ISSUE 3. P. 150 -164 15 100% 3

Classes with closest relation at Level 1


Rank Class id link
1 35179 CLOSEST STRING PROBLEM//CLOSEST SUBSTRING//CLOSEST STRING
2 8300 WHOLE GENOME DUPLICATION//GENOME DUPLICATION//GENE DUPLICATION
3 22783 BIDIRECTIONAL PROMOTER//OPERON PREDICTION//INTERGENIC DISTANCE
4 20039 ORTHOLOGY//BIDIRECTIONAL BEST HIT//GENOME FUNCTIONAL PREDICTION
5 9173 PLATYRRHINI//PLATYRRHINES//NEW WORLD MONKEYS
6 19149 LONGEST COMMON SUBSEQUENCE//TREE EDIT DISTANCE//UNORDERED TREES
7 36483 GENOMIC DATA VISUALIZATION//ALTERNATE ASSEMBLIES OF COW GENOMES//BAC FISH MAPPING
8 2338 MULTIPLE SEQUENCE ALIGNMENT//SEQUENCE ALIGNMENT//COMPUTER APPLICATIONS IN THE BIOSCIENCES
9 19282 CONSERVED NON CODING ELEMENTS//IROQUOIS//ENERGY ENVIRONM BIOL COMP
10 15522 CHLOROPLAST GENOME//PLASTOME//PLASTID GENOME

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