Class information for:
Level 1: PROCESSED PSEUDOGENES//CYP4Z2P//DUPLICATED PSEUDOGENES

Basic class information
Class id #P Avg. number of
references		 Database coverage
of references
28425 207 42.5 90%


Bar chart of Publication_year

Last years might be incomplete

Hierarchy of classes
The table includes all classes above and classes immediately below the current class.


Cluster id Level Cluster label #P
0 4 BIOCHEMISTRY & MOLECULAR BIOLOGY//CELL BIOLOGY//ONCOLOGY 4064930
90 3       MATHEMATICAL & COMPUTATIONAL BIOLOGY//BIOINFORMATICS//BMC BIOINFORMATICS 77178
126 2             MOLECULAR BIOLOGY AND EVOLUTION//BIOINFORMATICS//MATHEMATICAL & COMPUTATIONAL BIOLOGY 23963
28425 1                   PROCESSED PSEUDOGENES//CYP4Z2P//DUPLICATED PSEUDOGENES 207

Terms with highest relevance score


rank Term termType Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 PROCESSED PSEUDOGENES authKW 451754 3% 44% 7
2 CYP4Z2P authKW 295028 1% 100% 2
3 DUPLICATED PSEUDOGENES authKW 295028 1% 100% 2
4 PSEUDOGENES authKW 247886 10% 8% 20
5 PSEUDOGENE authKW 230968 14% 5% 29
6 RETROPSEUDOGENES authKW 196684 1% 67% 2
7 CERNA authKW 157334 4% 13% 8
8 ANTISENSERNA authKW 147514 0% 100% 1
9 ARPAT authKW 147514 0% 100% 1
10 BASS 432A address 147514 0% 100% 1

Web of Science journal categories


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 Genetics & Heredity 2998 50% 0% 103
2 Biotechnology & Applied Microbiology 687 25% 0% 52
3 Evolutionary Biology 506 11% 0% 22
4 Biochemistry & Molecular Biology 462 41% 0% 84
5 Mathematical & Computational Biology 222 6% 0% 13
6 Cell Biology 130 14% 0% 30
7 Biochemical Research Methods 54 6% 0% 13
8 Oncology 20 7% 0% 15
9 Biology 12 3% 0% 6
10 Biophysics 8 3% 0% 7

Address terms


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 BASS 432A 147514 0% 100% 1
2 COORDINAT COMPUTAT GENOM 147514 0% 100% 1
3 COUNCIL COMMUNIST YOUTH LEAGUE 147514 0% 100% 1
4 FRE 2326 DYNAM EVOLUT EXP S GENOMES MICRO 147514 0% 100% 1
5 JIANGSU CARCINOGENESIS INTRVENT 147514 0% 100% 1
6 LISHUI HOSPLISHUI MUNICIPAL CENT HOSP 147514 0% 100% 1
7 MOL BIOPHYS BICHEM 147514 0% 100% 1
8 RECH GENOM ENVIRONM 147514 0% 100% 1
9 ZHEJIANG UNIV THYROID BREAST SURG 147514 0% 100% 1
10 AFFILIATED NINGDE MUNICIPAL HOSP 73756 0% 50% 1

Journals


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 MOLECULAR BIOLOGY AND EVOLUTION 4462 6% 0% 13
2 BIOTECHFORUM ( BTF ) 3640 4% 0% 8
3 GENOME BIOLOGY 3155 4% 0% 8
4 BMC GENOMICS 1530 5% 0% 10
5 GENE 909 5% 0% 11
6 TRENDS IN GENETICS 862 2% 0% 4
7 ANNUAL REVIEW OF GENETICS 711 1% 0% 2
8 MAMMALIAN GENOME 666 2% 0% 4
9 NUCLEIC ACIDS RESEARCH 615 6% 0% 13
10 PLOS COMPUTATIONAL BIOLOGY 504 2% 0% 4

Author Key Words


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class		 LCSH search Wikipedia search
1 PROCESSED PSEUDOGENES 451754 3% 44% 7 Search PROCESSED+PSEUDOGENES Search PROCESSED+PSEUDOGENES
2 CYP4Z2P 295028 1% 100% 2 Search CYP4Z2P Search CYP4Z2P
3 DUPLICATED PSEUDOGENES 295028 1% 100% 2 Search DUPLICATED+PSEUDOGENES Search DUPLICATED+PSEUDOGENES
4 PSEUDOGENES 247886 10% 8% 20 Search PSEUDOGENES Search PSEUDOGENES
5 PSEUDOGENE 230968 14% 5% 29 Search PSEUDOGENE Search PSEUDOGENE
6 RETROPSEUDOGENES 196684 1% 67% 2 Search RETROPSEUDOGENES Search RETROPSEUDOGENES
7 CERNA 157334 4% 13% 8 Search CERNA Search CERNA
8 ANTISENSERNA 147514 0% 100% 1 Search ANTISENSERNA Search ANTISENSERNA
9 ARPAT 147514 0% 100% 1 Search ARPAT Search ARPAT
10 COMPETITIVE ENDOGENOUS RNAS 147514 0% 100% 1 Search COMPETITIVE+ENDOGENOUS+RNAS Search COMPETITIVE+ENDOGENOUS+RNAS

Core articles
The table includes core articles in the class. The following variables is taken into account for the relevance score of an article in a cluster c:
(1) Number of references referring to publications in the class.
(2) Share of total number of active references referring to publications in the class.
(3) Age of the article. New articles get higher score than old articles.
(4) Citation rate, normalized to year.


Rank Reference # ref.
in cl.		 Shr. of ref. in
cl.		 Citations
1 LI, W , YANG, W , WANG, XJ , (2013) PSEUDOGENES: PSEUDO OR REAL FUNCTIONAL ELEMENTS?.JOURNAL OF GENETICS AND GENOMICS. VOL. 40. ISSUE 4. P. 171-177 40 60% 21
2 LIU, GQ , BAIYINBAOLIGAO , XING, YQ , (2010) ADVANCES IN RESEARCH ON PSEUDOGENES.PROGRESS IN BIOCHEMISTRY AND BIOPHYSICS. VOL. 37. ISSUE 11. P. 1165-1174 34 59% 1
3 CALEY, DP , PINK, RC , WICKS, K , PUNCH, EK , JACOBS, L , CARTER, DRF , (2011) PSEUDOGENES: PSEUDO-FUNCTIONAL OR KEY REGULATORS IN HEALTH AND DISEASE?.RNA. VOL. 17. ISSUE 5. P. 792 -798 32 43% 96
4 ZHENG, DY , GERSTEIN, MB , (2007) THE AMBIGUOUS BOUNDARY BETWEEN GENES AND PSEUDOGENES: THE DEAD RISE UP, OR DO THEY?.TRENDS IN GENETICS. VOL. 23. ISSUE 5. P. 219 -224 27 60% 60
5 SEN, K , GHOSH, TC , (2013) PSEUDOGENES AND THEIR COMPOSERS: DELVING IN THE 'DEBRIS' OF HUMAN GENOME.BRIEFINGS IN FUNCTIONAL GENOMICS. VOL. 12. ISSUE 6. P. 536-547 36 41% 4
6 PEI, BK , SISU, C , FRANKISH, A , HOWALD, C , HABEGGER, L , MU, XJ , HARTE, R , BALASUBRAMANIAN, S , TANZER, A , DIEKHANS, M , ET AL (2012) THE GENCODE PSEUDOGENE RESOURCE.GENOME BIOLOGY. VOL. 13. ISSUE 9. P. - 24 47% 90
7 PINK, RC , CARTER, DRF , (2013) PSEUDOGENES AS REGULATORS OF BIOLOGICAL FUNCTION.ROLE OF NON-CODING RNAS IN BIOLOGY. VOL. 54. ISSUE . P. 103 -112 24 60% 7
8 XIAO, J , SEKHWAL, MK , LI, PC , RAGUPATHY, R , CLOUTIER, S , WANG, X , YOU, FM , (2016) PSEUDOGENES AND THEIR GENOME-WIDE PREDICTION IN PLANTS.INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES. VOL. 17. ISSUE 12. P. - 29 38% 0
9 GUO, XY , LIN, MY , ROCKOWITZ, S , LACHMAN, HM , ZHENG, DY , (2014) CHARACTERIZATION OF HUMAN PSEUDOGENE- DERIVED NON- CODING RNAS FOR FUNCTIONAL POTENTIAL.PLOS ONE. VOL. 9. ISSUE 4. P. - 31 33% 10
10 ROUCHKA, EC , CHA, IE , (2009) CURRENT TRENDS IN PSEUDOGENE DETECTION AND CHARACTERIZATION.CURRENT BIOINFORMATICS. VOL. 4. ISSUE 2. P. 112-119 31 39% 9

Classes with closest relation at Level 1


Rank Class id link
1 16263 INTRALOCUS SEXUAL CONFLICT//SEX BIASED GENE EXPRESSION//SEXUAL ANTAGONISM
2 19074 NATURAL ANTISENSE TRANSCRIPT//WRAP53//OVERLAPPING GENES
3 25557 NUMT//NUMTS//MITOCHONDRIAL PSEUDOGENES
4 8300 WHOLE GENOME DUPLICATION//GENOME DUPLICATION//GENE DUPLICATION
5 1636 SINE//LINE 1//BIOL COMPUTAT VISUALIZAT
6 17387 SOX2//NANOG//OCT4
7 13045 ISOCHORES//EVOLUZ MOL//MALE MUTATION BIAS
8 11342 GENE PREDICTION//GENE FINDING//GENE RECOGNITION
9 17904 INTRON GAIN//INTRON LOSS//INTRON EVOLUTION
10 357 LONG NONCODING RNAS//LNCRNA//LONG NONCODING RNA

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