Class information for:
Level 1: ARTIFICIAL TRANSCRIPTION FACTOR//ZINC FINGER//RECOGNITION CODE

Basic class information
Class id #P Avg. number of
references		 Database coverage
of references
14197 785 44.0 89%


Bar chart of Publication_year

Last years might be incomplete

Hierarchy of classes
The table includes all classes above and classes immediately below the current class.


Cluster id Level Cluster label #P
0 4 BIOCHEMISTRY & MOLECULAR BIOLOGY//CELL BIOLOGY//ONCOLOGY 4064930
219 3       PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS//PROTEIN FOLDING//PROTEIN STRUCTURE PREDICTION 50409
2636 2             COILED COIL//KRAB DOMAIN//PROTEIN DESIGN 3515
14197 1                   ARTIFICIAL TRANSCRIPTION FACTOR//ZINC FINGER//RECOGNITION CODE 785

Terms with highest relevance score


rank Term termType Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 ARTIFICIAL TRANSCRIPTION FACTOR authKW 726924 4% 64% 29
2 ZINC FINGER authKW 497795 15% 11% 116
3 RECOGNITION CODE authKW 247704 1% 58% 11
4 PROKARYOTIC ZINC FINGER authKW 194486 1% 100% 5
5 POINT RICHMOND TECH address 138413 1% 32% 11
6 ZINC FINGER PROTEIN authKW 136248 5% 9% 39
7 INTERUNIV BIOACT PEPTIDES CIRPEB address 121550 1% 63% 5
8 DESIGNED TRANSCRIPTION FACTORS authKW 116691 0% 100% 3
9 DESIGNER TRANSCRIPTION FACTOR authKW 116691 0% 100% 3
10 KRUPPEL TYPE LINKER authKW 116691 0% 100% 3

Web of Science journal categories


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 Biochemistry & Molecular Biology 4819 64% 0% 500
2 Biophysics 738 12% 0% 94
3 Cell Biology 379 13% 0% 102
4 Biotechnology & Applied Microbiology 192 8% 0% 63
5 Biochemical Research Methods 146 5% 0% 43
6 Chemistry, Inorganic & Nuclear 122 5% 0% 43
7 Chemistry, Multidisciplinary 108 11% 0% 83
8 Genetics & Heredity 79 6% 0% 44
9 Chemistry, Medicinal 27 3% 0% 20
10 Mathematical & Computational Biology 11 1% 0% 8

Address terms


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 POINT RICHMOND TECH 138413 1% 32% 11
2 INTERUNIV BIOACT PEPTIDES CIRPEB 121550 1% 63% 5
3 DAEDEOK BIOCOMMUNITY 51862 0% 67% 2
4 SANGAMO BIOSCI INC 51862 0% 67% 2
5 AFFILIATED HOSP QINGHAI UNIV 38897 0% 100% 1
6 BIOCHEM DIABET NUTR SCI 38897 0% 100% 1
7 BIOCHEM MACROMOL ORGAN CHEM 38897 0% 100% 1
8 BIOCHEM MOL BIOLGENET 38897 0% 100% 1
9 BIOMECH TISSUE ENGN CHONGQING MUNICIPAL 38897 0% 100% 1
10 BIOMED CONSORTIUM CHILE 38897 0% 100% 1

Journals


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 BIOCHEMISTRY 2739 8% 0% 62
2 NUCLEIC ACIDS RESEARCH 2401 6% 0% 50
3 JOURNAL OF MOLECULAR BIOLOGY 1177 3% 0% 27
4 CURRENT OPINION IN STRUCTURAL BIOLOGY 1080 1% 0% 8
5 JOURNAL OF INORGANIC BIOCHEMISTRY 976 2% 0% 12
6 METALLOMICS 943 1% 0% 5
7 BIOINORGANIC CHEMISTRY AND APPLICATIONS 923 0% 1% 3
8 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 844 6% 0% 47
9 NATURE BIOTECHNOLOGY 715 1% 0% 7
10 PROCEEDINGS OF THE JAPAN ACADEMY SERIES B-PHYSICAL AND BIOLOGICAL SCIENCES 675 1% 0% 6

Author Key Words


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class		 LCSH search Wikipedia search
1 ARTIFICIAL TRANSCRIPTION FACTOR 726924 4% 64% 29 Search ARTIFICIAL+TRANSCRIPTION+FACTOR Search ARTIFICIAL+TRANSCRIPTION+FACTOR
2 ZINC FINGER 497795 15% 11% 116 Search ZINC+FINGER Search ZINC+FINGER
3 RECOGNITION CODE 247704 1% 58% 11 Search RECOGNITION+CODE Search RECOGNITION+CODE
4 PROKARYOTIC ZINC FINGER 194486 1% 100% 5 Search PROKARYOTIC+ZINC+FINGER Search PROKARYOTIC+ZINC+FINGER
5 ZINC FINGER PROTEIN 136248 5% 9% 39 Search ZINC+FINGER+PROTEIN Search ZINC+FINGER+PROTEIN
6 DESIGNED TRANSCRIPTION FACTORS 116691 0% 100% 3 Search DESIGNED+TRANSCRIPTION+FACTORS Search DESIGNED+TRANSCRIPTION+FACTORS
7 DESIGNER TRANSCRIPTION FACTOR 116691 0% 100% 3 Search DESIGNER+TRANSCRIPTION+FACTOR Search DESIGNER+TRANSCRIPTION+FACTOR
8 KRUPPEL TYPE LINKER 116691 0% 100% 3 Search KRUPPEL+TYPE+LINKER Search KRUPPEL+TYPE+LINKER
9 CYS2HIS2 ZINC FINGER 87517 0% 75% 3 Search CYS2HIS2+ZINC+FINGER Search CYS2HIS2+ZINC+FINGER
10 ARTIFICIAL REPRESSORS 77794 0% 100% 2 Search ARTIFICIAL+REPRESSORS Search ARTIFICIAL+REPRESSORS

Core articles
The table includes core articles in the class. The following variables is taken into account for the relevance score of an article in a cluster c:
(1) Number of references referring to publications in the class.
(2) Share of total number of active references referring to publications in the class.
(3) Age of the article. New articles get higher score than old articles.
(4) Citation rate, normalized to year.


Rank Reference # ref.
in cl.		 Shr. of ref. in
cl.		 Citations
1 PAPWORTH, M , KOLASINSKA, P , MINCZUK, M , (2006) DESIGNER ZINC-FINGER PROTEINS AND THEIR APPLICATIONS.GENE. VOL. 366. ISSUE 1. P. 27 -38 84 74% 73
2 CORBI, N , LIBRI, V , ONORI, A , PASSANANTI, C , (2004) SYNTHETIC ZINC FINGER PEPTIDES: OLD AND NOVEL APPLICATIONS.BIOCHEMISTRY AND CELL BIOLOGY-BIOCHIMIE ET BIOLOGIE CELLULAIRE. VOL. 82. ISSUE 4. P. 428-436 73 81% 15
3 SERA, T , (2009) ZINC-FINGER-BASED ARTIFICIAL TRANSCRIPTION FACTORS AND THEIR APPLICATIONS.ADVANCED DRUG DELIVERY REVIEWS. VOL. 61. ISSUE 7-8. P. 513-526 67 65% 57
4 WOLFE, SA , NEKLUDOVA, L , PABO, CO , (2000) DNA RECOGNITION BY CYS(2)HIS(2) ZINC FINGER PROTEINS.ANNUAL REVIEW OF BIOPHYSICS AND BIOMOLECULAR STRUCTURE. VOL. 29. ISSUE . P. 183-212 68 58% 483
5 BLANCAFORT, P , BELTRAN, AS , (2008) RATIONAL DESIGN, SELECTION AND SPECIFICITY OF ARTIFICIAL TRANSCRIPTION FACTORS (ATFS): THE INFLUENCE OF CHROMATIN IN TARGET GENE REGULATION.COMBINATORIAL CHEMISTRY & HIGH THROUGHPUT SCREENING. VOL. 11. ISSUE 2. P. 146-158 70 63% 9
6 PABO, CO , PEISACH, E , GRANT, RA , (2001) DESIGN AND SELECTION OF NOVEL CYS(2)HIS(2) ZINC FINGER PROTEINS.ANNUAL REVIEW OF BIOCHEMISTRY. VOL. 70. ISSUE . P. 313-340 69 53% 372
7 BLANCAFORT, P , SEGAL, DJ , BARBAS, CF , (2004) DESIGNING TRANSCRIPTION FACTOR ARCHITECTURES FOR DRUG DISCOVERY.MOLECULAR PHARMACOLOGY. VOL. 66. ISSUE 6. P. 1361-1371 60 67% 110
8 NEGI, S , IMANISHI, M , MATSUMOTO, M , SUGIURA, Y , (2008) NEW REDESIGNED ZINC-FINGER PROTEINS: DESIGN STRATEGY AND ITS APPLICATION.CHEMISTRY-A EUROPEAN JOURNAL. VOL. 14. ISSUE 11. P. 3236 -3249 68 51% 35
9 SEGAL, DJ , BEERLI, RR , BLANCAFORT, P , DREIER, B , EFFERTZ, K , HUBER, A , KOKSCH, B , LUND, CV , MAGNENAT, L , VALENTE, D , ET AL (2003) EVALUATION OF A MODULAR STRATEGY FOR THE CONSTRUCTION OF NOVEL POLYDACTYL ZINC FINGER DNA-BINDING PROTEINS.BIOCHEMISTRY. VOL. 42. ISSUE 7. P. 2137-2148 42 89% 78
10 MICHALEK, JL , BESOLD, AN , MICHEL, SLJ , (2011) CYSTEINE AND HISTIDINE SHUFFLING: MIXING AND MATCHING CYSTEINE AND HISTIDINE RESIDUES IN ZINC FINGER PROTEINS TO AFFORD DIFFERENT FOLDS AND FUNCTION.DALTON TRANSACTIONS. VOL. 40. ISSUE 47. P. 12619 -12632 76 40% 12

Classes with closest relation at Level 1


Rank Class id link
1 14264 KRAB DOMAIN//KRAB//SCAN DOMAIN
2 27495 UM SYLVESTER BRAMAN FAMILY BREAST CANC//GCN4P//DNA PROMOTER ELEMENTS TRE AND CRE
3 26991 DRUG DESIGN BIOTECHNOL//METAL BINDING RESIDUES//METAL CATIONS M2
4 18004 INTERACTION PROPENSITY//PROTEIN RNA INTERACTIONS//DNA BINDING RESIDUES
5 5781 RNA POLYMERASE III//TFIIIB//RNA POLYMERASE III TRANSCRIPTION
6 915 GENOME EDITING//CRISPR//CRISPR CAS9
7 26432 YY1//YIN YANG 1//YY2
8 5490 NCP7//RNA DIMERIZATION//NUCLEOCAPSID PROTEIN
9 35311 COPPERII PEPTIDES//CYCLIC CPXC PEPTIDES//CYCLOR CYSTEINYL R CYSTEINE
10 6241 LAC REPRESSOR//TRP REPRESSOR//LACTOSE REPRESSOR

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