Class information for:
Level 1: ELASTIC NETWORK MODEL//NORMAL MODE ANALYSIS//GAUSSIAN NETWORK MODEL

Basic class information
Class id #P Avg. number of
references		 Database coverage
of references
4939 1700 50.1 82%


Bar chart of Publication_year

Last years might be incomplete

Hierarchy of classes
The table includes all classes above and classes immediately below the current class.


Cluster id Level Cluster label #P
0 4 BIOCHEMISTRY & MOLECULAR BIOLOGY//CELL BIOLOGY//ONCOLOGY 4064930
219 3       PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS//PROTEIN FOLDING//PROTEIN STRUCTURE PREDICTION 50409
260 2             PROTEIN FOLDING//JOURNAL OF CHEMICAL THEORY AND COMPUTATION//JOURNAL OF COMPUTATIONAL CHEMISTRY 19582
4939 1                   ELASTIC NETWORK MODEL//NORMAL MODE ANALYSIS//GAUSSIAN NETWORK MODEL 1700

Terms with highest relevance score


rank Term termType Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 ELASTIC NETWORK MODEL authKW 879085 4% 64% 76
2 NORMAL MODE ANALYSIS authKW 552957 6% 29% 105
3 GAUSSIAN NETWORK MODEL authKW 335239 2% 67% 28
4 LH BAKER BIOINFORMAT BIOL STAT address 183989 1% 41% 25
5 ELASTIC NETWORK authKW 146664 1% 58% 14
6 PROTEIN STRUCTURE NETWORKS authKW 140796 1% 56% 14
7 B FACTORS authKW 139312 1% 48% 16
8 SACKLER MOL MED address 113925 3% 14% 47
9 MOL STRUCT SECT address 97897 1% 42% 13
10 PROTEIN DYNAMICS authKW 90102 5% 6% 79

Web of Science journal categories


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 Biophysics 12407 31% 0% 530
2 Mathematical & Computational Biology 6530 12% 0% 197
3 Biochemistry & Molecular Biology 5473 48% 0% 810
4 Biochemical Research Methods 1980 12% 0% 206
5 Physics, Atomic, Molecular & Chemical 833 10% 0% 168
6 Computer Science, Interdisciplinary Applications 526 5% 0% 91
7 Chemistry, Physical 496 14% 0% 242
8 Crystallography 254 4% 0% 67
9 Biotechnology & Applied Microbiology 144 5% 0% 92
10 Chemistry, Multidisciplinary 115 8% 0% 144

Address terms


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 LH BAKER BIOINFORMAT BIOL STAT 183989 1% 41% 25
2 SACKLER MOL MED 113925 3% 14% 47
3 MOL STRUCT SECT 97897 1% 42% 13
4 HUMAN GENET MOL MED 72080 3% 9% 45
5 BAKER BIOINFORMAT BIOL SCI 71841 0% 100% 4
6 BIOINFORMAT THEO BIOL GRP 35921 0% 100% 2
7 COMPUTAT PHARMACEUT CHEM GRP 35921 0% 100% 2
8 L H BAKER BIOINFORMAT BIOL STAT 35921 0% 100% 2
9 ITP SB 35917 0% 50% 4
10 PROGRAM BIOINFORMAT COMPUTAT BIOL 35178 1% 14% 14

Journals


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS 64125 9% 2% 151
2 PHYSICAL BIOLOGY 16931 2% 3% 28
3 BIOPHYSICAL JOURNAL 14996 8% 1% 128
4 PROTEINS-STRUCTURE FUNCTION AND GENETICS 11658 1% 4% 17
5 PLOS COMPUTATIONAL BIOLOGY 10837 3% 1% 53
6 JOURNAL OF CHEMICAL THEORY AND COMPUTATION 9323 3% 1% 49
7 JOURNAL OF MOLECULAR GRAPHICS & MODELLING 7499 2% 2% 28
8 STRUCTURE 5745 2% 1% 35
9 JOURNAL OF COMPUTATIONAL CHEMISTRY 5615 3% 1% 44
10 BMC STRUCTURAL BIOLOGY 5139 1% 2% 12

Author Key Words


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class		 LCSH search Wikipedia search
1 ELASTIC NETWORK MODEL 879085 4% 64% 76 Search ELASTIC+NETWORK+MODEL Search ELASTIC+NETWORK+MODEL
2 NORMAL MODE ANALYSIS 552957 6% 29% 105 Search NORMAL+MODE+ANALYSIS Search NORMAL+MODE+ANALYSIS
3 GAUSSIAN NETWORK MODEL 335239 2% 67% 28 Search GAUSSIAN+NETWORK+MODEL Search GAUSSIAN+NETWORK+MODEL
4 ELASTIC NETWORK 146664 1% 58% 14 Search ELASTIC+NETWORK Search ELASTIC+NETWORK
5 PROTEIN STRUCTURE NETWORKS 140796 1% 56% 14 Search PROTEIN+STRUCTURE+NETWORKS Search PROTEIN+STRUCTURE+NETWORKS
6 B FACTORS 139312 1% 48% 16 Search B+FACTORS Search B+FACTORS
7 PROTEIN DYNAMICS 90102 5% 6% 79 Search PROTEIN+DYNAMICS Search PROTEIN+DYNAMICS
8 HINGE BENDING 84297 1% 36% 13 Search HINGE+BENDING Search HINGE+BENDING
9 NETWORK RIGIDITY 80818 0% 75% 6 Search NETWORK+RIGIDITY Search NETWORK+RIGIDITY
10 MEAN SQUARE FLUCTUATIONS 74833 0% 83% 5 Search MEAN+SQUARE+FLUCTUATIONS Search MEAN+SQUARE+FLUCTUATIONS

Core articles
The table includes core articles in the class. The following variables is taken into account for the relevance score of an article in a cluster c:
(1) Number of references referring to publications in the class.
(2) Share of total number of active references referring to publications in the class.
(3) Age of the article. New articles get higher score than old articles.
(4) Citation rate, normalized to year.


Rank Reference # ref. in
cl.		 Shr. of ref. in
cl.		 Citations
1 FUGLEBAKK, E , TIWARI, SP , REUTER, N , (2015) COMPARING THE INTRINSIC DYNAMICS OF MULTIPLE PROTEIN STRUCTURES USING ELASTIC NETWORK MODELS.BIOCHIMICA ET BIOPHYSICA ACTA-GENERAL SUBJECTS. VOL. 1850. ISSUE 5. P. 911 -922 97 82% 13
2 MAHAJAN, S , SANEJOUAND, YH , (2015) ON THE RELATIONSHIP BETWEEN LOW-FREQUENCY NORMAL MODES AND THE LARGE-SCALE CONFORMATIONAL CHANGES OF PROTEINS.ARCHIVES OF BIOCHEMISTRY AND BIOPHYSICS. VOL. 567. ISSUE . P. 59 -65 111 70% 8
3 BAHAR, I , LEZON, TR , YANG, LW , EYAL, E , (2010) GLOBAL DYNAMICS OF PROTEINS: BRIDGING BETWEEN STRUCTURE AND FUNCTION.ANNUAL REVIEW OF BIOPHYSICS, VOL 39. VOL. 39. ISSUE . P. 23-42 60 85% 213
4 BASTOLLA, U , (2014) COMPUTING PROTEIN DYNAMICS FROM PROTEIN STRUCTURE WITH ELASTIC NETWORK MODELS.WILEY INTERDISCIPLINARY REVIEWS-COMPUTATIONAL MOLECULAR SCIENCE. VOL. 4. ISSUE 5. P. 488 -503 79 80% 6
5 SKJAERVEN, L , HOLLUP, SM , REUTER, N , (2009) NORMAL MODE ANALYSIS FOR PROTEINS.JOURNAL OF MOLECULAR STRUCTURE-THEOCHEM. VOL. 898. ISSUE 1-3. P. 42-48 79 83% 37
6 BAHAR, I , RADER, AJ , (2005) COARSE-GRAINED NORMAL MODE ANALYSIS IN STRUCTURAL BIOLOGY.CURRENT OPINION IN STRUCTURAL BIOLOGY. VOL. 15. ISSUE 5. P. 586-592 52 83% 405
7 LOPEZ-BLANCO, JR , CHACON, P , (2016) NEW GENERATION OF ELASTIC NETWORK MODELS.CURRENT OPINION IN STRUCTURAL BIOLOGY. VOL. 37. ISSUE . P. 46 -53 61 71% 2
8 TIWARI, SP , FUGLEBAKK, E , HOLLUP, SM , SKJAERVEN, L , CRAGNOLINI, T , GRINDHAUG, SH , TEKLE, KM , REUTER, N , (2014) WEBNM@ V2.0: WEB SERVER AND SERVICES FOR COMPARING PROTEIN FLEXIBILITY.BMC BIOINFORMATICS. VOL. 15. ISSUE . P. - 58 81% 6
9 MICHELETTI, C , (2013) COMPARING PROTEINS BY THEIR INTERNAL DYNAMICS: EXPLORING STRUCTURE-FUNCTION RELATIONSHIPS BEYOND STATIC STRUCTURAL ALIGNMENTS.PHYSICS OF LIFE REVIEWS. VOL. 10. ISSUE 1. P. 1 -26 81 52% 31
10 BAHAR, I , LEZON, TR , BAKAN, A , SHRIVASTAVA, IH , (2010) NORMAL MODE ANALYSIS OF BIOMOLECULAR STRUCTURES: FUNCTIONAL MECHANISMS OF MEMBRANE PROTEINS.CHEMICAL REVIEWS. VOL. 110. ISSUE 3. P. 1463 -1497 114 31% 170

Classes with closest relation at Level 1


Rank Class id link
1 6749 MARKOV STATE MODEL//ENHANCED SAMPLING//TRANSITION PATH SAMPLING
2 22502 MULTIPLE TIME STEP//SHAKE//SYMPLECTIC INTEGRATION METHODS
3 6131 HYDRATION WATER//DYNAMICAL TRANSITION//HYDRATED PROTEINS
4 34766 CELL VIRUS THEORY//NON LINEAR HYDRODYNAMIC EQUATIONS//ALL ATOM MULTISCALE
5 17055 CORRELATED MUTATIONS//DIRECT COUPLING ANALYSIS//INVERSE ISING PROBLEM
6 17105 HYDROGEN TUNNELLING//PROMOTING VIBRATION//HYDROGEN TUNNELING
7 6443 PROTEIN PROTEIN DOCKING//CAPRI//PROTEIN DOCKING
8 4994 PROTEIN STRUCTURE COMPARISON//PROTEIN STRUCTURE ALIGNMENT//STRUCTURE COMPARISON
9 14601 COARSE GRAINING//BIOPHYS MODELING SIMULAT//RENORMALIZATION GROUP MAP
10 2138 RESIDUAL DIPOLAR COUPLINGS//JOURNAL OF BIOMOLECULAR NMR//PSEUDOCONTACT SHIFTS

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