Class information for:
Level 1: SELECTIVE SWEEP//MCDONALD KREITMAN TEST//GENETICS

Basic class information
Class id #P Avg. number of
references		 Database coverage
of references
2640 2189 51.1 79%


Bar chart of Publication_year

Last years might be incomplete

Hierarchy of classes
The table includes all classes above and classes immediately below the current class.


Cluster id Level Cluster label #P
3 4 PLANT SCIENCES//AGRONOMY//FOOD SCIENCE & TECHNOLOGY 1882812
69 3       PLANT SCIENCES//EVOLUTIONARY BIOLOGY//AMERICAN JOURNAL OF BOTANY 83717
826 2             CONSERVATION GENETICS RESOURCES//MICROSATELLITES//PHYLOGEOGRAPHY 11863
2640 1                   SELECTIVE SWEEP//MCDONALD KREITMAN TEST//GENETICS 2189

Terms with highest relevance score


rank Term termType Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 SELECTIVE SWEEP authKW 312198 3% 31% 73
2 MCDONALD KREITMAN TEST authKW 269376 1% 74% 26
3 GENETICS journal 256766 22% 4% 484
4 BACKGROUND SELECTION authKW 203054 1% 47% 31
5 GENETIC HITCHHIKING authKW 202473 1% 52% 28
6 COALESCENT authKW 173787 3% 18% 70
7 MOLECULAR BIOLOGY AND EVOLUTION journal 157706 11% 5% 251
8 ANCESTRAL SELECTION GRAPH authKW 147317 1% 81% 13
9 SECT EVOLUTIONARY BIOL address 131630 2% 26% 37
10 NEARLY NEUTRAL THEORY authKW 101218 1% 48% 15

Web of Science journal categories


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with term
in class
1 Genetics & Heredity 81272 79% 0% 1723
2 Evolutionary Biology 48955 31% 1% 685
3 Mathematical & Computational Biology 2902 7% 0% 152
4 Ecology 2358 13% 0% 275
5 Biochemistry & Molecular Biology 1422 24% 0% 535
6 Biotechnology & Applied Microbiology 523 8% 0% 174
7 Biology 374 4% 0% 96
8 Biochemical Research Methods 258 5% 0% 100
9 Statistics & Probability 243 3% 0% 68
10 Anthropology 23 1% 0% 16

Address terms


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 SECT EVOLUTIONARY BIOL 131630 2% 26% 37
2 BIOL STAT COMPUTAT BIOL 86015 2% 12% 52
3 STUDY EVOLUT 49487 1% 14% 25
4 BIOMED SCI TECHNOL LITA SEGRATE 45641 0% 55% 6
5 UNIT HUMAN EVOLUTIONARY GENET 35748 0% 26% 10
6 VIENNA POPULAT GENET 31694 0% 45% 5
7 POPULAT GENET 31055 2% 5% 45
8 FDN CA GRANDA IRCCS OSPED MAGGIORE POLICLIN 30769 0% 28% 8
9 ECOL CC237 27895 0% 100% 2
10 EPFL SV IBI SV UPJENSEN 27895 0% 100% 2

Journals


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 GENETICS 256766 22% 4% 484
2 MOLECULAR BIOLOGY AND EVOLUTION 157706 11% 5% 251
3 THEORETICAL POPULATION BIOLOGY 74026 5% 5% 99
4 GENOME BIOLOGY AND EVOLUTION 18171 2% 3% 42
5 GENETICS RESEARCH 15792 1% 4% 30
6 PLOS GENETICS 13282 3% 1% 76
7 MOLECULAR ECOLOGY 6860 3% 1% 60
8 JOURNAL OF MOLECULAR EVOLUTION 6089 2% 1% 41
9 BIOTECHFORUM ( BTF ) 4803 1% 1% 30
10 ANNUAL REVIEW OF GENOMICS AND HUMAN GENETICS 4326 0% 3% 10

Author Key Words


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class		 LCSH search Wikipedia search
1 SELECTIVE SWEEP 312198 3% 31% 73 Search SELECTIVE+SWEEP Search SELECTIVE+SWEEP
2 MCDONALD KREITMAN TEST 269376 1% 74% 26 Search MCDONALD+KREITMAN+TEST Search MCDONALD+KREITMAN+TEST
3 BACKGROUND SELECTION 203054 1% 47% 31 Search BACKGROUND+SELECTION Search BACKGROUND+SELECTION
4 GENETIC HITCHHIKING 202473 1% 52% 28 Search GENETIC+HITCHHIKING Search GENETIC+HITCHHIKING
5 COALESCENT 173787 3% 18% 70 Search COALESCENT Search COALESCENT
6 ANCESTRAL SELECTION GRAPH 147317 1% 81% 13 Search ANCESTRAL+SELECTION+GRAPH Search ANCESTRAL+SELECTION+GRAPH
7 NEARLY NEUTRAL THEORY 101218 1% 48% 15 Search NEARLY+NEUTRAL+THEORY Search NEARLY+NEUTRAL+THEORY
8 ANCESTRAL INFERENCE 99267 1% 65% 11 Search ANCESTRAL+INFERENCE Search ANCESTRAL+INFERENCE
9 SITE FREQUENCY SPECTRUM 91110 1% 47% 14 Search SITE+FREQUENCY+SPECTRUM Search SITE+FREQUENCY+SPECTRUM
10 HITCHHIKING 74018 1% 28% 19 Search HITCHHIKING Search HITCHHIKING

Core articles
The table includes core articles in the class. The following variables is taken into account for the relevance score of an article in a cluster c:
(1) Number of references referring to publications in the class.
(2) Share of total number of active references referring to publications in the class.
(3) Age of the article. New articles get higher score than old articles.
(4) Citation rate, normalized to year.


Rank Reference # ref. in
cl.		 Shr. of ref. in
cl.		 Citations
1 CUTTER, AD , PAYSEUR, BA , (2013) GENOMIC SIGNATURES OF SELECTION AT LINKED SITES: UNIFYING THE DISPARITY AMONG SPECIES.NATURE REVIEWS GENETICS. VOL. 14. ISSUE 4. P. 262 -274 103 66% 90
2 SELLA, G , PETROV, DA , PRZEWORSKI, M , ANDOLFATTO, P , (2009) PERVASIVE NATURAL SELECTION IN THE DROSOPHILA GENOME?.PLOS GENETICS. VOL. 5. ISSUE 6. P. - 90 78% 159
3 LOHMUELLER, KE , ALBRECHTSEN, A , LI, YR , KIM, SY , KORNELIUSSEN, T , VINCKENBOSCH, N , TIAN, G , HUERTA-SANCHEZ, E , FEDER, AF , GRARUP, N , ET AL (2011) NATURAL SELECTION AFFECTS MULTIPLE ASPECTS OF GENETIC VARIATION AT PUTATIVELY NEUTRAL SITES ACROSS THE HUMAN GENOME.PLOS GENETICS. VOL. 7. ISSUE 10. P. - 85 76% 54
4 STEPHAN, W , (2016) SIGNATURES OF POSITIVE SELECTION: FROM SELECTIVE SWEEPS AT INDIVIDUAL LOCI TO SUBTLE ALLELE FREQUENCY CHANGES IN POLYGENIC ADAPTATION.MOLECULAR ECOLOGY. VOL. 25. ISSUE 1. P. 79 -88 53 82% 9
5 COMERON, JM , (2014) BACKGROUND SELECTION AS BASELINE FOR NUCLEOTIDE VARIATION ACROSS THE DROSOPHILA GENOME.PLOS GENETICS. VOL. 10. ISSUE 6. P. - 84 67% 27
6 GARUD, NR , MESSER, PW , BUZBAS, EO , PETROV, DA , (2015) RECENT SELECTIVE SWEEPS IN NORTH AMERICAN DROSOPHILA MELANOGASTER SHOW SIGNATURES OF SOFT SWEEPS.PLOS GENETICS. VOL. 11. ISSUE 2. P. - 52 88% 28
7 ELYASHIV, E , SATTATH, S , HU, TT , STRUTSOVSKY, A , MCVICKER, G , ANDOLFATTO, P , COOP, G , SELLA, G , (2016) A GENOMIC MAP OF THE EFFECTS OF LINKED SELECTION IN DROSOPHILA.PLOS GENETICS. VOL. 12. ISSUE 8. P. - 69 86% 1
8 CAMPOS, JL , HALLIGAN, DL , HADDRILL, PR , CHARLESWORTH, B , (2014) THE RELATION BETWEEN RECOMBINATION RATE AND PATTERNS OF MOLECULAR EVOLUTION AND VARIATION IN DROSOPHILA MELANOGASTER.MOLECULAR BIOLOGY AND EVOLUTION. VOL. 31. ISSUE 4. P. 1010-1028 69 78% 29
9 CHARLESWORTH, B , (2012) THE EFFECTS OF DELETERIOUS MUTATIONS ON EVOLUTION AT LINKED SITES.GENETICS. VOL. 190. ISSUE 1. P. 5 -22 78 62% 74
10 SCHRIDER, DR , MENDES, FK , HAHN, MW , KERN, AD , (2015) SOFT SHOULDERS AHEAD: SPURIOUS SIGNATURES OF SOFT AND PARTIAL SELECTIVE SWEEPS RESULT FROM LINKED HARD SWEEPS.GENETICS. VOL. 200. ISSUE 1. P. 267 -U506 57 86% 10

Classes with closest relation at Level 1


Rank Class id link
1 16147 WRIGHT FISHER MODEL//LAMBDA COALESCENT//COALESCENT
2 24748 APPROXIMATE BAYESIAN COMPUTATION//LIKELIHOOD FREE INFERENCE//LIKELIHOOD FREE METHODS
3 13045 ISOCHORES//EVOLUZ MOL//MALE MUTATION BIAS
4 10256 CODON MODELS//POSITIVE SELECTION//MOLECULAR BIOLOGY AND EVOLUTION
5 16263 INTRALOCUS SEXUAL CONFLICT//SEX BIASED GENE EXPRESSION//SEXUAL ANTAGONISM
6 4394 HAPLOTYPE INFERENCE//LINKAGE DISEQUILIBRIUM//HAPLOTYPE ASSEMBLY
7 29672 PHYLODYNAMICS//TRANSMISSION TREE//SERIAL SAMPLES
8 15183 DROSOPHILA SUBOBSCURA//INVERSION POLYMORPHISM//CHROMOSOMAL INVERSION
9 14114 MEIOTIC DRIVE//HYBRID INVIABILITY//HYBRID STERILITY
10 10530 ASSISTED MIGRATION//FO T CONSERVAT GENET//SYST INTEGRAT BIOL

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