Class information for:
Level 1: T6SS//TYPE VI SECRETION//TYPE VI SECRETION SYSTEM

Basic class information
Class id #P Avg. number of
references		 Database coverage
of references
21857 402 50.3 92%


Bar chart of Publication_year

Last years might be incomplete

Hierarchy of classes
The table includes all classes above and classes immediately below the current class.


Cluster id Level Cluster label #P
7 4 INFECTIOUS DISEASES//MICROBIOLOGY//VIROLOGY 1353914
643 3       ACANTHAMOEBA//BURKHOLDERIA PSEUDOMALLEI//LEGIONELLA 12292
2857 2             BURKHOLDERIA PSEUDOMALLEI//MELIOIDOSIS//BURKHOLDERIA MALLEI 2929
21857 1                   T6SS//TYPE VI SECRETION//TYPE VI SECRETION SYSTEM 402

Terms with highest relevance score


rank Term termType Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 T6SS authKW 985201 5% 62% 21
2 TYPE VI SECRETION authKW 949467 4% 83% 15
3 TYPE VI SECRETION SYSTEM authKW 703077 5% 49% 19
4 VGRG authKW 465240 2% 88% 7
5 CONTACT DEPENDENT GROWTH INHIBITION authKW 390638 1% 86% 6
6 TYPE SIX SECRETION SYSTEM authKW 316489 1% 83% 5
7 TRNASE ACTIVITY authKW 303831 1% 100% 4
8 BACTERIAL COMPETITION authKW 245012 2% 32% 10
9 BIOMOL SCI ENGN PROGRAM address 240705 7% 12% 27
10 CNRS UMR 7255 address 227873 1% 100% 3

Web of Science journal categories


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 Microbiology 8024 58% 0% 235
2 Biochemistry & Molecular Biology 820 39% 0% 157
3 Parasitiology 529 7% 0% 29
4 Virology 342 7% 0% 30
5 Infectious Diseases 137 6% 0% 25
6 Biochemical Research Methods 112 6% 0% 26
7 Cell Biology 86 9% 0% 38
8 Biophysics 81 6% 0% 25
9 Crystallography 71 4% 0% 17
10 Genetics & Heredity 33 5% 0% 21

Address terms


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 BIOMOL SCI ENGN PROGRAM 240705 7% 12% 27
2 CNRS UMR 7255 227873 1% 100% 3
3 LISMUMR 7255 227873 1% 100% 3
4 INGN SYST MACROMOL 223181 6% 12% 24
5 MICROBIOL MEDITERRANEE 197929 6% 11% 24
6 UMR 7255 160844 1% 35% 6
7 UMR7255 155071 2% 29% 7
8 BEAMLINE SCI 151916 0% 100% 2
9 CNRSUMR 7255 151916 0% 100% 2
10 HERITAGE MED 6 22 151916 0% 100% 2

Journals


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 CELL HOST & MICROBE 10199 3% 1% 12
2 MBIO 3496 2% 1% 9
3 PLOS PATHOGENS 3096 4% 0% 15
4 MOLECULAR MICROBIOLOGY 3072 5% 0% 22
5 CURRENT OPINION IN MICROBIOLOGY 2648 2% 0% 8
6 VIRULENCE 2285 1% 1% 4
7 ACTA CRYSTALLOGRAPHICA SECTION F-STRUCTURAL BIOLOGY COMMUNICATIONS 1581 2% 0% 8
8 JOURNAL OF BACTERIOLOGY 1290 6% 0% 24
9 ENVIRONMENTAL MICROBIOLOGY 1263 2% 0% 8
10 ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY 964 1% 0% 4

Author Key Words


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class		 LCSH search Wikipedia search
1 T6SS 985201 5% 62% 21 Search T6SS Search T6SS
2 TYPE VI SECRETION 949467 4% 83% 15 Search TYPE+VI+SECRETION Search TYPE+VI+SECRETION
3 TYPE VI SECRETION SYSTEM 703077 5% 49% 19 Search TYPE+VI+SECRETION+SYSTEM Search TYPE+VI+SECRETION+SYSTEM
4 VGRG 465240 2% 88% 7 Search VGRG Search VGRG
5 CONTACT DEPENDENT GROWTH INHIBITION 390638 1% 86% 6 Search CONTACT+DEPENDENT+GROWTH+INHIBITION Search CONTACT+DEPENDENT+GROWTH+INHIBITION
6 TYPE SIX SECRETION SYSTEM 316489 1% 83% 5 Search TYPE+SIX+SECRETION+SYSTEM Search TYPE+SIX+SECRETION+SYSTEM
7 TRNASE ACTIVITY 303831 1% 100% 4 Search TRNASE+ACTIVITY Search TRNASE+ACTIVITY
8 BACTERIAL COMPETITION 245012 2% 32% 10 Search BACTERIAL+COMPETITION Search BACTERIAL+COMPETITION
9 ICMF 227873 1% 100% 3 Search ICMF Search ICMF
10 TSSL 227873 1% 100% 3 Search TSSL Search TSSL

Core articles
The table includes core articles in the class. The following variables is taken into account for the relevance score of an article in a cluster c:
(1) Number of references referring to publications in the class.
(2) Share of total number of active references referring to publications in the class.
(3) Age of the article. New articles get higher score than old articles.
(4) Citation rate, normalized to year.


Rank Reference # ref.
in cl.		 Shr. of ref. in
cl.		 Citations
1 CIANFANELLI, FR , MONLEZUN, L , COULTHURST, SJ , (2016) AIM, LOAD, FIRE: THE TYPE VI SECRETION SYSTEM, A BACTERIAL NANOWEAPON.TRENDS IN MICROBIOLOGY. VOL. 24. ISSUE 1. P. 51 -62 79 95% 20
2 DURAND, E , CAMBILLAU, C , CASCALES, E , JOURNET, L , (2014) VGRG, TAE, TIE, AND BEYOND: THE VERSATILE ARSENAL OF TYPE VI SECRETION EFFECTORS.TRENDS IN MICROBIOLOGY. VOL. 22. ISSUE 9. P. 498 -507 75 86% 33
3 HO, BT , DONG, TG , MEKALANOS, JJ , (2014) A VIEW TO A KILL: THE BACTERIAL TYPE VI SECRETION SYSTEM.CELL HOST & MICROBE. VOL. 15. ISSUE 1. P. 9-21 73 70% 81
4 BASLER, M , (2015) TYPE VI SECRETION SYSTEM: SECRETION BY A CONTRACTILE NANOMACHINE.PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES. VOL. 370. ISSUE 1679. P. - 89 77% 8
5 FLAUGNATTI, N , LE, TTH , CANAAN, S , ASCHTGEN, MS , NGUYEN, VS , BLANGY, S , KELLENBERGER, C , ROUSSEL, A , CAMBILLAU, C , CASCALES, E , ET AL (2016) A PHOSPHOLIPASE A(1) ANTIBACTERIAL TYPE VI SECRETION EFFECTOR INTERACTS DIRECTLY WITH THE C-TERMINAL DOMAIN OF THE VGRG SPIKE PROTEIN FOR DELIVERY.MOLECULAR MICROBIOLOGY. VOL. 99. ISSUE 6. P. 1099 -1118 57 80% 5
6 HACHANI, A , WOOD, TE , FILLOUX, A , (2016) TYPE VI SECRETION AND ANTI-HOST EFFECTORS.CURRENT OPINION IN MICROBIOLOGY. VOL. 29. ISSUE . P. 81 -93 62 63% 9
7 RUSSELL, AB , PETERSON, SB , MOUGOUS, JD , (2014) TYPE VI SECRETION SYSTEM EFFECTORS: POISONS WITH A PURPOSE.NATURE REVIEWS MICROBIOLOGY. VOL. 12. ISSUE 2. P. 137 -148 70 51% 108
8 COULTHURST, SJ , (2013) THE TYPE VI SECRETION SYSTEM - A WIDESPREAD AND VERSATILE CELL TARGETING SYSTEM.RESEARCH IN MICROBIOLOGY. VOL. 164. ISSUE 6. P. 640 -654 64 74% 53
9 DINIZ, JA , LIU, YC , COULTHURST, SJ , (2015) MOLECULAR WEAPONRY: DIVERSE EFFECTORS DELIVERED BY THE TYPE VI SECRETION SYSTEM.CELLULAR MICROBIOLOGY. VOL. 17. ISSUE 12. P. 1742 -1751 52 88% 10
10 ZOUED, A , BRUNET, YR , DURAND, E , ASCHTGEN, MS , LOGGER, L , DOUZI, B , JOURNET, L , CAMBILLAU, C , CASCALES, E , (2014) ARCHITECTURE AND ASSEMBLY OF THE TYPE VI SECRETION SYSTEM.BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR CELL RESEARCH. VOL. 1843. ISSUE 8. P. 1664 -1673 54 79% 29

Classes with closest relation at Level 1


Rank Class id link
1 35831 ODZ//TENEURIN//TEN M
2 12801 AUTOTRANSPORTER//AUTODISPLAY//BAM COMPLEX
3 28383 BURKHOLDERIA GLUMAE//SAROCLADIUM ORYZAE//TOXOFLAVIN
4 29620 SERRATIA ENTOMOPHILA//AMBER DISEASE//COSTELYTRA ZEALANDICA
5 4621 BURKHOLDERIA PSEUDOMALLEI//MELIOIDOSIS//BURKHOLDERIA MALLEI
6 8298 COLICIN//COLICIN E1//PYOCIN
7 16048 EDWARDSIELLA TARDA//EDWARDSIELLA ICTALURI//EDWARDSIELLOSIS
8 6304 C DI GMP//DIGUANYLATE CYCLASE//CYCLIC DI GMP
9 4269 DNA PACKAGING//TERMINASE//BACTERIOPHAGE P22
10 12199 TYPE IV PILI//TYPE II SECRETION//GENERAL SECRETORY PATHWAY

Go to start page